>FC-AC03 (FC-AC03Q) /CSM/FC/FC-AC/FC-AC03Q.Seq.d/
AATCAATAGAAATAATGGAAAATAGATACATTTCCAGAATCGAAACCATTTCTTCTCATT
TGTTATCAACAAATGATGTCTCCTCACAAAATGAAAGTGAATCAATTACCTTTGTAAAAC
CATTACCAAAGAATAAAAAAGATCACGACCAGTCCATCGAATCCGATTCATCATTTACAA
GAGAAAAACAATTTGAAGAAGAATTAGATATTTTAGGAGAGATTAATTCAAAGACAGGTT
TATTTGAAATTAAACAAGTACCATATCAATTATCATTTGATCAAGGATTTTTTCATGCAT
GTAGGGCAATTGAAATATTAACAGAAAAAGATCCAAAAAGAATTATATGTTTAGGTATTG
CTGGCCCAGTTGGTGCTGGAAAAACAACATTAGCTAATAAAATCGGTAGTCTTGTTAATG
GTGTTATAATTTCACTTCAAGATTTCGTTAAACTTGAAAATGTTAAAGATAATAATTATG
ATGATCCTGTATTAATTGATTTTGATAAAGTTATTTCAACATTAAATGAATTAAAAGAAA
ATAAAACAGTTATAATTCCAAAGATTGTAAATAGAAAGATGGAAAGTAGAAGTATATCAT
TATCAACATCAAAAGTTATTATATTAGAGGGTGCATATGCATTGAGTGCACGTATTAGAC
ACTATTGGATATTAGTGTGCATTACAGXXXXXXXXXXGCATGGTCAATTCAATATCCCCT
TCTACAATGAAATGATGGATGGTGCCGTCAATACTCGTCCATCTTTAAATTTCGAAATCT
CTGTCAAAACTTTGGGTGGTCTACTCTCTTTAGGTTATCAAATTGGTGCTATCCTCAATC
GTACCGTTGAGGTTTGGTATGATAAAAATGGTGTTGTCATCACTAAAGAATATATCAAAG
AATTGGAGAAACATTTCATTCAAATTAAAGGTCACTCTCGTAGAGAAGTATTAGATAGTG
CTGAAAAATTAAAAATCACTGGTAATCATGTCCCTCAAACTTTTCTTTATCTTTATTTTA
AAAAATTAAAAAAAAGTAAAAATCCAAATTATTCAAAATTAAAACCAAATAATACAAATT
CAAAAATTTTAAAAAATAATAAAGATAAAAAAAATTTATAAATTAAAAAAATAAATAAAT
AAAAAACTATATATATATTATATAATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA

SIEIMENRYISRIETISSHLLSTNDVSSQNESESITFVKPLPKNKKDHDQSIESDSSFTR
EKQFEEELDILGEINSKTGLFEIKQVPYQLSFDQGFFHACRAIEILTEKDPKRIICLGIA
GPVGAGKTTLANKIGSLVNGVIISLQDFVKLENVKDNNYDDPVLIDFDKVISTLNELKEN
KTVIIPKIVNRKMESRSISLSTSKVIILEGAYALSARIRHYWILVCIT---

---HGQFNIPFYNEMMDGAVNTRPSLNFEISVKTLGGLLSLGYQIGAILNRTVEVWYDKN
GVVITKEYIKELEKHFIQIKGHSRREVLDSAEKLKITGNHVPQTFLYLYFKKLKKSKNPN
YSKLKPNNTNSKILKNNKDKKNL*ikkink*ktiyilynnkkkkkkkkkkkk

Frame A:
nq*k*wkidtfpeskpfllicyqqmmsphkmkvnqlpl*nhyqrikkittspsnpihhlq
eknnlkkn*if*erliqrqvylklnkyhinyhlikdffmhvgqlky*qkkiqkelyv*vl
laqlvlekqh*liksvvllmvl*fhfkislnlkmlkiiimmily*liliklfqh*mn*kk
ikql*fqrl*ierwkvevyhyqhqklly*rvhmh*vhvldtigy*calq---

---awsiqypllq*ndgwcrqyssifkfrnlcqnfgwstlfrlsnwcypqsyr*glv**k
wcchh*riyqrigetfhsn*rsls*rsir*c*kiknhw*scpsnfslslf*kikkk*ksk
lfkiktk*ykfknfkk**r*kkfin*knk*iknyiyii***kkkkkkkkkkk

Frame B:
inrnngk*ihfqnrnhffsfvink*clltk*k*inylcktitke*krsrpvhrirfiiyk
rkti*rriryfrrd*fkdrfi*n*tstisiii*srifscm*gn*ninrkrskknymfryc
wpswcwknnis**nr*sc*wcynftsrfr*t*kc*r**l**scin*f**syfnik*ikrk
*nsynskdck*kdgk*kyiiiniksyyirgciciecty*tlldisvhy---

---HGQFNIPFYNEMMDGAVNTRPSLNFEISVKTLGGLLSLGYQIGAILNRTVEVWYDKN
GVVITKEYIKELEKHFIQIKGHSRREVLDSAEKLKITGNHVPQTFLYLYFKKLKKSKNPN
YSKLKPNNTNSKILKNNKDKKNL*ikkink*ktiyilynnkkkkkkkkkkkk

Frame C:
SIEIMENRYISRIETISSHLLSTNDVSSQNESESITFVKPLPKNKKDHDQSIESDSSFTR
EKQFEEELDILGEINSKTGLFEIKQVPYQLSFDQGFFHACRAIEILTEKDPKRIICLGIA
GPVGAGKTTLANKIGSLVNGVIISLQDFVKLENVKDNNYDDPVLIDFDKVISTLNELKEN
KTVIIPKIVNRKMESRSISLSTSKVIILEGAYALSARIRHYWILVCIT---

---mvnsispstmk*wmvpsilvhl*iskslsklwvvysl*viklvlssivplrfgmikm
vlsslknisknwrnisfklkvtlveky*ivlkn*kslvimslklffifilkn*kkvkiqi
iqn*nqiiqiqkf*kiikikkiyklkk*inkklyiyyiiikkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AC03 (FC-AC03Q) /CSM/FC/FC-AC/FC-AC03Q.Seq.d/                     1961   0.0
VFC747 (VFC747Q) /CSM/VF/VFC7-B/VFC747Q.Seq.d/                       1277   0.0
VFE785 (VFE785Q) /CSM/VF/VFE7-D/VFE785Q.Seq.d/                        864   0.0
SFF596 (SFF596Q) /CSM/SF/SFF5-D/SFF596Q.Seq.d/                        704   0.0
SSL453 (SSL453Q) /CSM/SS/SSL4-C/SSL453Q.Seq.d/                        652   0.0
AFA601 (AFA601Q) /CSM/AF/AFA6-A/AFA601Q.Seq.d/                         44   0.005
VSG889 (VSG889Q) /CSM/VS/VSG8-D/VSG889Q.Seq.d/                         42   0.019
VFK423 (VFK423Q) /CSM/VF/VFK4-A/VFK423Q.Seq.d/                         42   0.019
VFK325 (VFK325Q) /CSM/VF/VFK3-B/VFK325Q.Seq.d/                         42   0.019
VFA864 (VFA864Q) /CSM/VF/VFA8-C/VFA864Q.Seq.d/                         42   0.019

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AY007802|AY007802.1 Dictyostelium discoideum uridine kinase-like protein mRNA, complete cds.  1281  0.0  3
AY007803|AY007803.1 Dictyostelium discoideum uridine kinase-like protein gene, complete cds.   680  0.0  5
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4.    44  0.001  5
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence.    44  0.010  8
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           44  0.011  4
AL132715|AL132715.3 Human chromosome 14 DNA sequence *** IN PROGRESS *** BAC R-368E9 of  library RPCI-11 from chromosome 14 of Homo sapiens (Human).    38  0.013  9
AC116032|AC116032.2 Dictyostelium discoideum chromosome 2 map 4158743-4189373 strain AX4, complete sequence.    34  0.018  7
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    44  0.023  9
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34  0.026  15
AC006279|AC006279.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    34  0.028  8

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY007802_1(AY007802|pid:none) Dictyostelium discoideum uridine k...   417   e-115
AC079829_16(AC079829|pid:none) Arabidopsis thaliana chromosome 1...   100   1e-19
AF480496_13(AF480496|pid:none) Oryza sativa clone BAC 49D11, com...   100   1e-19
AK102236_1(AK102236|pid:none) Oryza sativa Japonica Group cDNA c...   100   1e-19
CP000594_315(CP000594|pid:none) Ostreococcus lucimarinus CCE9901...    95   4e-18
AC016662_15(AC016662|pid:none) Arabidopsis thaliana chromosome 1...    93   2e-17
AL731614_16(AL731614|pid:none) Oryza sativa genomic DNA, chromos...    76   3e-12
AM463144_1(AM463144|pid:none) Vitis vinifera contig VV78X078650....    70   1e-10
A84425(A84425) hypothetical protein At2g01460 [imported] - Arabi...    61   7e-08
CP001185_1479(CP001185|pid:none) Thermosipho africanus TCF52B, c...    59   4e-07

 psg: 0.75  gvh: 0.52  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.09  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for FC-AC03 is nuc

>FC-AC03F.Seq
AATCAATAGAAATAATGGAAAATAGATACATTTCCAGAATCGAAACCATTTCTTCTCATT
TGTTATCAACAAATGATGTCTCCTCACAAAATGAAAGTGAATCAATTACCTTTGTAAAAC
CATTACCAAAGAATAAAAAAGATCACGACCAGTCCATCGAATCCGATTCATCATTTACAA
GAGAAAAACAATTTGAAGAAGAATTAGATATTTTAGGAGAGATTAATTCAAAGACAGGTT
TATTTGAAATTAAACAAGTACCATATCAATTATCATTTGATCAAGGATTTTTTCATGCAT
GTAGGGCAATTGAAATATTAACAGAAAAAGATCCAAAAAGAATTATATGTTTAGGTATTG
CTGGCCCAGTTGGTGCTGGAAAAACAACATTAGCTAATAAAATCGGTAGTCTTGTTAATG
GTGTTATAATTTCACTTCAAGATTTCGTTAAACTTGAAAATGTTAAAGATAATAATTATG
ATGATCCTGTATTAATTGATTTTGATAAAGTTATTTCAACATTAAATGAATTAAAAGAAA
ATAAAACAGTTATAATTCCAAAGATTGTAAATAGAAAGATGGAAAGTAGAAGTATATCAT
TATCAACATCAAAAGTTATTATATTAGAGGGTGCATATGCATTGAGTGCACGTATTAGAC
ACTATTGGATATTAGTGTGCATTACAG----------

>FC-AC03Z.Seq
----------GCATGGTCAATTCAATATCCCCTTCTACAATGAAATGATGGATGGTGCCG
TCAATACTCGTCCATCTTTAAATTTCGAAATCTCTGTCAAAACTTTGGGTGGTCTACTCT
CTTTAGGTTATCAAATTGGTGCTATCCTCAATCGTACCGTTGAGGTTTGGTATGATAAAA
ATGGTGTTGTCATCACTAAAGAATATATCAAAGAATTGGAGAAACATTTCATTCAAATTA
AAGGTCACTCTCGTAGAGAAGTATTAGATAGTGCTGAAAAATTAAAAATCACTGGTAATC
ATGTCCCTCAAACTTTTCTTTATCTTTATTTTAAAAAATTAAAAAAAAGTAAAAATCCAA
ATTATTCAAAATTAAAACCAAATAATACAAATTCAAAAATTTTAAAAAATAATAAAGATA
AAAAAAATTTATAAATTAAAAAAATAAATAAATAAAAAACTATATATATATTATATAATA
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

>FC-AC03P.Seq
AATCAATAGAAATAATGGAAAATAGATACATTTCCAGAATCGAAACCATTTCTTCTCATT
TGTTATCAACAAATGATGTCTCCTCACAAAATGAAAGTGAATCAATTACCTTTGTAAAAC
CATTACCAAAGAATAAAAAAGATCACGACCAGTCCATCGAATCCGATTCATCATTTACAA
GAGAAAAACAATTTGAAGAAGAATTAGATATTTTAGGAGAGATTAATTCAAAGACAGGTT
TATTTGAAATTAAACAAGTACCATATCAATTATCATTTGATCAAGGATTTTTTCATGCAT
GTAGGGCAATTGAAATATTAACAGAAAAAGATCCAAAAAGAATTATATGTTTAGGTATTG
CTGGCCCAGTTGGTGCTGGAAAAACAACATTAGCTAATAAAATCGGTAGTCTTGTTAATG
GTGTTATAATTTCACTTCAAGATTTCGTTAAACTTGAAAATGTTAAAGATAATAATTATG
ATGATCCTGTATTAATTGATTTTGATAAAGTTATTTCAACATTAAATGAATTAAAAGAAA
ATAAAACAGTTATAATTCCAAAGATTGTAAATAGAAAGATGGAAAGTAGAAGTATATCAT
TATCAACATCAAAAGTTATTATATTAGAGGGTGCATATGCATTGAGTGCACGTATTAGAC
ACTATTGGATATTAGTGTGCATTACAG----------GCATGGTCAATTCAATATCCCCT
TCTACAATGAAATGATGGATGGTGCCGTCAATACTCGTCCATCTTTAAATTTCGAAATCT
CTGTCAAAACTTTGGGTGGTCTACTCTCTTTAGGTTATCAAATTGGTGCTATCCTCAATC
GTACCGTTGAGGTTTGGTATGATAAAAATGGTGTTGTCATCACTAAAGAATATATCAAAG
AATTGGAGAAACATTTCATTCAAATTAAAGGTCACTCTCGTAGAGAAGTATTAGATAGTG
CTGAAAAATTAAAAATCACTGGTAATCATGTCCCTCAAACTTTTCTTTATCTTTATTTTA
AAAAATTAAAAAAAAGTAAAAATCCAAATTATTCAAAATTAAAACCAAATAATACAAATT
CAAAAATTTTAAAAAATAATAAAGATAAAAAAAATTTATAAATTAAAAAAATAAATAAAT
AAAAAACTATATATATATTATATAATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA