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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AB36
Library FC
(Link to library)
Clone ID FC-AB36
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15455-1
Original site URL
Representative seq. ID FC-AB36Z
(Link to Original site)
Representative DNA sequence 
>FC-AB36 (FC-AB36Q) /CSM/FC/FC-AB/FC-AB36Q.Seq.d/
XXXXXXXXXXTTATAGATCTGCCCTTAAAGAATATCAAAATAAAAAGAGTTTATAAATGA
AATAATAAAAAAAATAAAAAAAAACTAAAAAAGAAAAAAAAAACAAAATAAAATTAAATA
AAAAAACAAAAACAAAACAAAAAAAAAAAA
sequence update 1997. 1. 7
Translated Amino Acid sequence 
---yrsalkeyqnkksl*mk**kk*KKTKKEKKNKIKLNKKTKTKQKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
---yrsalkeyqnkksl*mk**kk*KKTKKEKKNKIKLNKKTKTKQKKK


Frame B:
---idlplknikikrvyk*nnkknkkklkkkkktk*n*ikkqkqnkkkk


Frame C:
---*icp*risk*kefineiikkikkn*krkkkqnkik*knknktkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE558 (VFE558Q) /CSM/VF/VFE5-C/VFE558Q.Seq.d/                         52   2e-06
FC-AB36 (FC-AB36Q) /CSM/FC/FC-AB/FC-AB36Q.Seq.d/                       52   2e-06
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.   111  2e-21  1
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence.   111  2e-21  1
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    96  1e-16  1
AE007581|AE007581.1 Clostridium acetobutylicum ATCC824 section 69 of 356 of the complete genome.    42  0.27  2
BH768500|BH768500.1 BMBAC360D05SP6_PSU Brugia malayi Genomic Bac Library 3 Brugia malayi genomic, DNA sequence.    44  0.40  1
BM166554|BM166554.1 EST569077 PyBS Plasmodium yoelii yoelii cDNA clone PYCNT63 5' end, mRNA sequence.    44  0.40  1
AX344559|AX344559.1 Sequence 10 from Patent WO0200932.            38  1.5  2
AL161738|AL161738.15 Human DNA sequence from clone RP11-549G1 on chromosome 1q31.2-32.1.    42  1.6  1
AR271569|AR271569.1 Sequence 1 from patent US 6503729.            42  1.6  1
AL356293|AL356293.3 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-157J22.    42  1.6  1
dna update 2003. 7.11
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 27,677,204
protein update 2009. 4.13
PSORT 

 psg: 0.41  gvh: -0.08  alm: 0.96  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.74  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: mitochondrial

>> prediction for FC-AB36 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-AB36Z
3' end seq. 
>FC-AB36Z.Seq
----------TTATAGATCTGCCCTTAAAGAATATCAAAATAAAAAGAGTTTATAAATGA
AATAATAAAAAAAATAAAAAAAAACTAAAAAAGAAAAAAAAAACAAAATAAAATTAAATA
AAAAAACAAAAACAAAACAAAAAAAAAAAA
Length of 3' end seq. 140
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -