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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AA23
Library FC
(Link to library)
Clone ID FC-AA23
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16090-1
Original site URL
Representative seq. ID FC-AA23E
(Link to Original site)
Representative DNA sequence 
>FC-AA23 (FC-AA23Q) /CSM/FC/FC-AA/FC-AA23Q.Seq.d/
AAACTCGATTATATTCTTAATCTTAAAGTTCAAGATTTCATGGAAAGACGTCTCCAAACT
TTAGTCTTCAAAAATGGTCTTGCCAAATCAATCCATCACGCTCGTGTTTTAATCAAAGGT
AGACACATCCGTGTTGGTAAACAATTAGTCAACGTTCCATCTTTCCTCGTCCGTGTTGAA
TCCCAAAAGCACTTAGGTTTAGCTTCAACCTCCCCATTAGCTGGTGGTCGTCCAGGTCGT
CGTGCCCGTAAAATGGCCAAGAACAACTCATCAAAAGGTGAAGAAGAAAACTAAATTAAT
AAAAATAACCATTATATTAGAGAGTAGTATATTGTAGTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1996.12.12
Translated Amino Acid sequence 
KLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLIKGRHIRVGKQLVNVPSFLVRVE
SQKHLGLASTSPLAGGRPGRRARKMAKNNSSKGEEEN*inknnhyire*yivvkkkkkkk
kkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
KLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLIKGRHIRVGKQLVNVPSFLVRVE
SQKHLGLASTSPLAGGRPGRRARKMAKNNSSKGEEEN*inknnhyire*yivvkkkkkkk
kkkkkkkkk


Frame B:
nsiiflilkfkiswkdvskl*sskmvlpnqsitlvf*skvdtsvlvnn*stfhlsssvln
pkst*v*lqpph*lvvvqvvvpvkwprtthqkvkkktklikitiilessil**kkkkkkk
kkkkkkkk


Frame C:
trlys*s*ssrfhgktspnfslqkwscqinpsrscfnqr*thpcw*tisqrsifprpc*i
pkalrfsfnlpiswwssrsscp*ngqeqlikr*rrkln**k*ply*rvvycskkkkkkkk
kkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI271 (VSI271Q) /CSM/VS/VSI2-C/VSI271Q.Seq.d/                        670   0.0
VSE725 (VSE725Q) /CSM/VS/VSE7-B/VSE725Q.Seq.d/                        670   0.0
VSB144 (VSB144Q) /CSM/VS/VSB1-B/VSB144Q.Seq.d/                        670   0.0
FC-BO11 (FC-BO11Q) /CSM/FC/FC-BO/FC-BO11Q.Seq.d/                      670   0.0
FC-AS15 (FC-AS15Q) /CSM/FC/FC-AS/FC-AS15Q.Seq.d/                      670   0.0
FC-AA23 (FC-AA23Q) /CSM/FC/FC-AA/FC-AA23Q.Seq.d/                      670   0.0
VHO354 (VHO354Q) /CSM/VH/VHO3-C/VHO354Q.Seq.d/                        652   0.0
SLA664 (SLA664Q) /CSM/SL/SLA6-C/SLA664Q.Seq.d/                        650   0.0
SLA656 (SLA656Q) /CSM/SL/SLA6-C/SLA656Q.Seq.d/                        650   0.0
VSK290 (VSK290Q) /CSM/VS/VSK2-D/VSK290Q.Seq.d/                        646   0.0
own update 2002.11.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X06636|X06636.1 Dictyostelium rp1024 gene for ribosomal protein 1024.   670   0.0    1
X15384|X15384.1 Dictyostelium discoideum mRNA for V12 gene.       634   e-178  1
AL114484|AL114484.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   3e-15  2
AL113432|AL113432.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   3e-15  2
AL112836|AL112836.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   3e-15  2
AL115396|AL115396.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   3e-15  2
AL115391|AL115391.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   3e-15  2
AL116832|AL116832.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   3e-15  2
AL116249|AL116249.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   3e-15  2
AL116178|AL116178.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   3e-15  2
dna update 2003.11.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P14132) RecName: Full=40S ribosomal protein S9; AltName: Full=4...   145   3e-34
DQ369819_1(DQ369819|pid:none) Rhizoctonia solani clone Sel3094 4...   115   5e-25
CU633445_35(CU633445|pid:none) Podospora anserina genomic DNA ch...   115   6e-25
AP007167_255(AP007167|pid:none) Aspergillus oryzae RIB40 genomic...   115   6e-25
AJ749993_1(AJ749993|pid:none) Catharanthus roseus mRNA for 40S r...   114   1e-24
AY857466_1(AY857466|pid:none) Suberites domuncula S9 mRNA, compl...   114   1e-24
BT034842_1(BT034842|pid:none) Zea mays full-length cDNA clone ZM...   114   1e-24
EU958237_1(EU958237|pid:none) Zea mays clone 1680160 40S ribosom...   114   1e-24
BT070286_1(BT070286|pid:none) Picea sitchensis clone WS02717_F01...   114   1e-24
AY193430_1(AY193430|pid:none) Lactuca saligna genotype PI491204 ...   114   1e-24
protein update 2009. 7. 2
PSORT 

 psg: 0.38  gvh: 0.47  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.17  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for FC-AA23 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AA23E
Full length Seq. 
>FC-AA23E.Seq
AAACTCGATTATATTCTTAATCTTAAAGTTCAAGATTTCATGGAAAGACGTCTCCAAACT
TTAGTCTTCAAAAATGGTCTTGCCAAATCAATCCATCACGCTCGTGTTTTAATCAAAGGT
AGACACATCCGTGTTGGTAAACAATTAGTCAACGTTCCATCTTTCCTCGTCCGTGTTGAA
TCCCAAAAGCACTTAGGTTTAGCTTCAACCTCCCCATTAGCTGGTGGTCGTCCAGGTCGT
CGTGCCCGTAAAATGGCCAAGAACAACTCATCAAAAGGTGAAGAAGAAAACTAAATTAAT
AAAAATAACCATTATATTAGAGAGTAGTATATTGTAGTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 387