FC-AA21
Library FC
(Link to library)
Clone ID FC-AA21
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15450-1
Original site URL
Representative seq. ID FC-AA21E
(Link to Original site)
Representative DNA sequence
>FC-AA21 (FC-AA21Q) /CSM/FC/FC-AA/FC-AA21Q.Seq.d/
AATTATTTTCATTAATTTTAGCTTTATTCCTTGTCAACTCCGCTGTTGTCTCTTCACTCG
ACTCATGTAGTATTTGTGTTGATTTTGTTGGTAACTCACTCAATGATCTTTTAAATATTA
TCCTTAACTCTGGTGTTATTGGTACCTGTGGTGATCTTTGCTCAGCTGTTCCAGGTGGTC
AAATTGTTGATACCGTTTGCGACTTATTATGCGATTATGTTGGCGTTGATGAATTTATTA
AACTCATTTCAGATGTTGACCCAGATCCAATTTACATTTGTGAAAAGATCAGTGTTTGCA
AAACCAACGATAACGCAGCTGCTTCATTAGATTTAGTTCAAATTAACCCACAAAACGGTA
CTGTCGGTGGAACATTCACCCTCTCAATTGCTTACACTGTTACCAACACCATCGCCACTG
GTCAATTAGCTTTCAATATCATCGATCCAACCGGTAATGCTTTTGGTGATGCCGTTTTAT
TAGTTCAACAATCACCAGAACAATACACCCAACAATTCCAATTCCAAGCTACCCCATCAG
AACAAGAATCATTCCCAAATGGTTTATACACTGTCCAAGCTCTCGTTTGTGAAGGTTCAT
GTGGTTCACCACATCCAAACACTTACACTCTTGCCAACGGTACCACCACTTTCACCATCT
CTGGTGCTGATTCTTCATCAATGTCTGGTGCTGGTTCTTTCTCTGGTTCTTCCCAATCAA
CCCAAACTGGTGCCGCCTCTGGTTCAGGTTCAGGTTTTGCTTTATTTTAAAAAAATACTT
ATTAAAATAAATATTTAATTTTATAATTTTTTATTTAATTCTATAAAAAAAAAAAAAAA
sequence update 1996.12.12
Translated Amino Acid sequence
LFSLILALFLVNSAVVSSLDSCSICVDFVGNSLNDLLNIILNSGVIGTCGDLCSAVPGGQ
IVDTVCDLLCDYVGVDEFIKLISDVDPDPIYICEKISVCKTNDNAAASLDLVQINPQNGT
VGGTFTLSIAYTVTNTIATGQLAFNIIDPTGNAFGDAVLLVQQSPEQYTQQFQFQATPSE
QESFPNGLYTVQALVCEGSCGSPHPNTYTLANGTTTFTISGADSSSMSGAGSFSGSSQST
QTGAASGSGSGFALF*knty*nkylil*ffi*fykkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
nyfh*f*lyslstpllslhsthvvfvlillvthsmif*ilsltlvllvpvvifaqlfqvv
kllipfatyyaimlalmnllnsfqmltqiqftfvkrsvfakptitqllh*i*fklthktv
lsvehspsqlltllptpsplvn*lsissiqpvmllvmpfy*fnnhqnntpnnsnsklphq
nknhsqmvytlsklsfvkvhvvhhiqtltllptvpplspslvlilhqclvlvlslvlpnq
pklvpplvqvqvllyfkkilikini*fynflfnsikkkk


Frame B:
iifinfsfipcqlrcclftrlm*ylc*fcw*ltq*sfkyyp*lwcywylw*sllscsrws
nc*yrlrlimrlcwr**iy*thfrc*prsnlhl*kdqclqnqr*rscfirfssn*ptkry
crwnihplnclhcyqhhrhwsisfqyhrsnr*cfw*crfisstitrtihptipipsypir
triipkwfihcpssrl*rfmwfttskhlhscqryhhfhhlwc*ffinvwcwfflwffpin
pnwcrlwfrfrfcfilkkyllk*ifnfiifylil*kkkk


Frame C:
LFSLILALFLVNSAVVSSLDSCSICVDFVGNSLNDLLNIILNSGVIGTCGDLCSAVPGGQ
IVDTVCDLLCDYVGVDEFIKLISDVDPDPIYICEKISVCKTNDNAAASLDLVQINPQNGT
VGGTFTLSIAYTVTNTIATGQLAFNIIDPTGNAFGDAVLLVQQSPEQYTQQFQFQATPSE
QESFPNGLYTVQALVCEGSCGSPHPNTYTLANGTTTFTISGADSSSMSGAGSFSGSSQST
QTGAASGSGSGFALF*knty*nkylil*ffi*fykkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AA21 (FC-AA21Q) /CSM/FC/FC-AA/FC-AA21Q.Seq.d/ 1522 0.0
FC-020 (FC-020Q) /CSM/CG/CG-FC/FC-020Q.Seq.d/ 1522 0.0
VSI490 (VSI490Q) /CSM/VS/VSI4-D/VSI490Q.Seq.d/ 1509 0.0
VSF151 (VSF151Q) /CSM/VS/VSF1-C/VSF151Q.Seq.d/ 1509 0.0
SLE884 (SLE884Q) /CSM/SL/SLE8-D/SLE884Q.Seq.d/ 1497 0.0
VSJ484 (VSJ484Q) /CSM/VS/VSJ4-D/VSJ484Q.Seq.d/ 1493 0.0
VSF843 (VSF843Q) /CSM/VS/VSF8-B/VSF843Q.Seq.d/ 1481 0.0
SSD491 (SSD491Q) /CSM/SS/SSD4-D/SSD491Q.Seq.d/ 1451 0.0
VSC485 (VSC485Q) /CSM/VS/VSC4-D/VSC485Q.Seq.d/ 1209 0.0
FC-BO02 (FC-BO02Q) /CSM/FC/FC-BO/FC-BO02Q.Seq.d/ 1142 0.0

own update 2001. 8.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF140780|AF140780.1 Dictyostelium discoideum countin gene, complete cds. 1273 0.0 1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 1273 0.0 1
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence. 54 2e-06 8
AE000788|AE000788.1 Borrelia burgdorferi plasmid lp36, complete plasmid sequence. 36 0.083 6
AJ251114|AJ251114.1 Mucor circinelloides f. lusitanicus odc gene for ornithine decarboxylase, exons 1-2. 42 0.36 2
AR300198|AR300198.1 Sequence 1 from patent US 6537773. 34 0.69 13
AL645770|AL645770.7 Human DNA sequence *** SEQUENCING CANCELLED *** from clone RP11-135B10. 46 0.76 1
AL627310|AL627310.5 Human DNA sequence from clone RP11-199P24 on chromosome 1. 46 0.76 1
AC005699|AC005699.9 Homo sapiens chromosome 4 clone C0473M13 map 4p16, complete sequence. 36 0.91 7
AC006919|AC006919.6 Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence. 42 1.2 5
dna update 2003.11.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q86IV5) RecName: Full=Countin-1; Flags: Precursor; &AC116986_1... 413 e-114
AF140780_1(AF140780|pid:none) Dictyostelium discoideum countin g... 409 e-113
(Q86HV8) RecName: Full=Countin-3; Flags: Precursor; &AB211530_1... 208 2e-52
(Q8WSR7) RecName: Full=Countin-2; Flags: Precursor; &AB067573_1... 176 1e-42
(Q554K2) RecName: Full=Countin-like protein; Flags: Precursor; 108 2e-22
AC116956_1(AC116956|pid:none) Dictyostelium discoideum chromosom... 108 2e-22
CP000682_1469(CP000682|pid:none) Metallosphaera sedula DSM 5348,... 38 0.36
AF082528_1(AF082528|pid:none) Entamoeba dispar strain SAW 142 po... 38 0.47
(Q24824) RecName: Full=Pore-forming peptide ameobapore B; AltNam... 37 0.81
CP000269_2685(CP000269|pid:none) Janthinobacterium sp. Marseille... 37 1.1
protein update 2009. 3. 2
PSORT

psg: 0.98 gvh: 0.81 alm: 0.38 top: 0.33 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: extracellular, including cell wall
12.0 %: vacuolar
8.0 %: mitochondrial
8.0 %: endoplasmic reticulum
4.0 %: cytoplasmic
4.0 %: nuclear

>> prediction for FC-AA21 is exc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AA21E
Full length Seq.
>FC-AA21E.Seq
AATTATTTTCATTAATTTTAGCTTTATTCCTTGTCAACTCCGCTGTTGTCTCTTCACTCG
ACTCATGTAGTATTTGTGTTGATTTTGTTGGTAACTCACTCAATGATCTTTTAAATATTA
TCCTTAACTCTGGTGTTATTGGTACCTGTGGTGATCTTTGCTCAGCTGTTCCAGGTGGTC
AAATTGTTGATACCGTTTGCGACTTATTATGCGATTATGTTGGCGTTGATGAATTTATTA
AACTCATTTCAGATGTTGACCCAGATCCAATTTACATTTGTGAAAAGATCAGTGTTTGCA
AAACCAACGATAACGCAGCTGCTTCATTAGATTTAGTTCAAATTAACCCACAAAACGGTA
CTGTCGGTGGAACATTCACCCTCTCAATTGCTTACACTGTTACCAACACCATCGCCACTG
GTCAATTAGCTTTCAATATCATCGATCCAACCGGTAATGCTTTTGGTGATGCCGTTTTAT
TAGTTCAACAATCACCAGAACAATACACCCAACAATTCCAATTCCAAGCTACCCCATCAG
AACAAGAATCATTCCCAAATGGTTTATACACTGTCCAAGCTCTCGTTTGTGAAGGTTCAT
GTGGTTCACCACATCCAAACACTTACACTCTTGCCAACGGTACCACCACTTTCACCATCT
CTGGTGCTGATTCTTCATCAATGTCTGGTGCTGGTTCTTTCTCTGGTTCTTCCCAATCAA
CCCAAACTGGTGCCGCCTCTGGTTCAGGTTCAGGTTTTGCTTTATTTTAAAAAAATACTT
ATTAAAATAAATATTTAATTTTATAATTTTTTATTTAATTCTATAAAAAAAAAAAAAAA
Length of full length seq. 839