NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AA20
Library FC
(Link to library)
Clone ID FC-AA20
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID FC-AA20Z
(Link to Original site)
Representative DNA sequence 
>FC-AA20 (FC-AA20Q) /CSM/FC/FC-AA/FC-AA20Q.Seq.d/
XXXXXXXXXXCTTTGCCCCAGCTGGTCTCTCAACTGAAGTCAAATCAGTCGAAATGCATC
ACGAACAACTCCCAGAAGCCCGTCCAGGTGACAATGTAGGTTTCAACGTTAAAAACGTTT
CAGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCAAAAACGATCCACCACAAG
AAACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAATCCATGCTG
GTTACTCACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAAATTCACTGAAATCG
TCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCCGTCG
TCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTTG
AATCCTTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACCG
TCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGATAAGA
AAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTTAATAAATAGCAT
TTTATAATAATTTTAAA
sequence update 1996.12.12
Translated Amino Acid sequence 
---FAPAGLSTEVKSVEMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQE
TEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVV
LKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKK
GAAAPSKKK*innis**iafynnfk
Translated Amino Acid sequence (All Frames) 
Frame A:
---FAPAGLSTEVKSVEMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQE
TEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVV
LKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKK
GAAAPSKKK*innis**iafynnfk


Frame B:
---lpqlvsqlksnqskcitnnsqkpvqvtm*vstlktfqskklkevwslvtpktihhkk
lknsllklssstiqvksmlvthqs*ivtlltlpvnslkssiklivvlvpslpkkvlppss
*rmvmplwsn*phlvqcvlnpslnthh*vvspsei*dkpspsvssnqpsrkpqvkpvirk
vllphqkrnk*iiflnk*hfiiil


Frame C:
---cpswsln*sqisrnasrttprspsr*qcrfqr*krfsqrn*krygrw*lqkrsttrn
*kircssyrpqpsrsnpcwlltslrlshcshcl*ih*nrr*s*ssywcrrcqrrycrrrl
kew*crygrinpissnvc*ilh*iptirsfrrqryetnrrrrchqinrqespr*sr**er
cccpikkeink*yflinsil**f*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE555 (SLE555Q) /CSM/SL/SLE5-C/SLE555Q.Seq.d/                       1203   0.0
SLC219 (SLC219Q) /CSM/SL/SLC2-A/SLC219Q.Seq.d/                       1203   0.0
SLB809 (SLB809Q) /CSM/SL/SLB8-A/SLB809Q.Seq.d/                       1203   0.0
SLB795 (SLB795Q) /CSM/SL/SLB7-D/SLB795Q.Seq.d/                       1203   0.0
SLB739 (SLB739Q) /CSM/SL/SLB7-B/SLB739Q.Seq.d/                       1203   0.0
SLB508 (SLB508Q) /CSM/SL/SLB5-A/SLB508Q.Seq.d/                       1203   0.0
SLB439 (SLB439Q) /CSM/SL/SLB4-B/SLB439Q.Seq.d/                       1203   0.0
SLB431 (SLB431Q) /CSM/SL/SLB4-B/SLB431Q.Seq.d/                       1203   0.0
SLB409 (SLB409Q) /CSM/SL/SLB4-A/SLB409Q.Seq.d/                       1203   0.0
SLB265 (SLB265Q) /CSM/SL/SLB2-C/SLB265Q.Seq.d/                       1203   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X55973|X55973.1 D. discoideum EF1-I gene for elongation factor 1 alpha.  1084  0.0  1
X55972|X55972.1 D. discoideum EF1-II gene for elongation factor 1 alpha.  1029  0.0  1
AF016242|AF016242.1 Dictyostelium discoideum protein synthesis elongation factor 1-alpha (tef2) gene, partial cds.   860  0.0  1
M29935|M29935.1 C.albicans elongation factor 1-alpha (TEF-2) gene, complete cds.   117  2e-79  5
M29934|M29934.1 C.albicans elongation factor 1-alpha (TEF-1) gene, complete cds.   117  4e-77  5
AX109679|AX109679.1 Sequence 412 from Patent WO0123604.          101  1e-68  5
AX109682|AX109682.1 Sequence 415 from Patent WO0123604.           98  6e-68  5
AX109681|AX109681.1 Sequence 414 from Patent WO0123604.           98  6e-68  5
AX109696|AX109696.1 Sequence 429 from Patent WO0123604.          105  2e-67  5
AX109678|AX109678.1 Sequence 411 from Patent WO0123604.          101  2e-67  5
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio...   334   1e-90
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati...   334   1e-90
(P18624) RecName: Full=Elongation factor 1-alpha;          Short...   334   1e-90
AY542532_1(AY542532|pid:none) Cladonema radiatum translation elo...   258   9e-68
(Q00251) RecName: Full=Elongation factor 1-alpha;          Short...   258   1e-67
Y09023_1(Y09023|pid:none) G.cydonium mRNA for elongation factor ...   256   3e-67
(P41745) RecName: Full=Elongation factor 1-alpha;          Short...   255   6e-67
AY643820_1(AY643820|pid:none) Arcyria denudata elongation factor...   255   6e-67
AY643816_1(AY643816|pid:none) Lycogala epidendrum elongation fac...   254   1e-66
AJ549292_1(AJ549292|pid:none) Podocoryne carnea mRNA for elongat...   254   1e-66
protein update 2009. 4.13
PSORT 

 psg: 0.55  gvh: 0.29  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for FC-AA20 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-AA20Z
3' end seq. 
>FC-AA20Z.Seq
----------CTTTGCCCCAGCTGGTCTCTCAACTGAAGTCAAATCAGTCGAAATGCATC
ACGAACAACTCCCAGAAGCCCGTCCAGGTGACAATGTAGGTTTCAACGTTAAAAACGTTT
CAGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCAAAAACGATCCACCACAAG
AAACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAATCCATGCTG
GTTACTCACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAAATTCACTGAAATCG
TCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCCGTCG
TCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTTG
AATCCTTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACCG
TCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGATAAGA
AAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTTAATAAATAGCAT
TTTATAATAATTTTAAA
Length of 3' end seq. 607
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -