>FC-AA19 (FC-AA19Q) /CSM/FC/FC-AA/FC-AA19Q.Seq.d/
CAGAAATCACTGGTTTTTCATTCCAATTATTTAATATTATCAGTATTTGGAATGTTGATC
AAACATCATTCAATAGCTACAGTCTTCCAATTTGGTTACCAGCCATTCAAGTTGGTTCAT
CATTCAGTTTTGGTTATATTCAAAAAACTGATACTGTTGTCCCACTCTCCTCCCAATCAG
TTGTATGTCAAGAAATTCCAACCCCATCCCCAACTCCATCACCATCCCCATGTATGATTA
ATGTTTCTCAAAGTATCGTTAATTCATGGAGAGAAAATACTCAAGACTTTATTCAAGTTG
AAGTAAACCTTAAAAACATTGGTCAAAATACCGTTTACCAATTCTCATTCGAAATATTTG
ATCTTGTTAACATTTGGGGCGTTGAATTATTATCAAATAATACTTATCAACTCCCAAGTT
GGGTATATAGTATCCCAGTTGGTTTCATCTCACAATTTTGGTTATATCCAAAAATCAAAA
CCATCTTTTACCAATTTATTCACAATTACCAACTTGGTCAAACAACTCCAACAACAACTX
XXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA

EITGFSFQLFNIISIWNVDQTSFNSYSLPIWLPAIQVGSSFSFGYIQKTDTVVPLSSQSV
VCQEIPTPSPTPSPSPCMINVSQSIVNSWRENTQDFIQVEVNLKNIGQNTVYQFSFEIFD
LVNIWGVELLSNNTYQLPSWVYSIPVGFISQFWLYPKIKTIFYQFIHNYQLGQTTPTTT-
--

---KKKKKKKKKKKKKKKKKKKKKKKKKK

Frame A:
qkslvfhsnylilsvfgmlikhhsiatvfqfgyqpfklvhhsvlvifkklillshsppnq
lyvkkfqphpqlhhhphv*lmflkvslihgekilktlfklk*tlktlvkipftnshskyl
illtfgalnyyqiilinsqvgyivsqlvsshnfgyiqkskpsftnlftitnlvkqlqqq-
--

---KKKKKKKKKKKKKKKKKKKKKKKKKK

Frame B:
rnhwffipii*yyqylec*sniiq*lqssnlvtshsswfiiqfwlyskn*yccptllpis
cmsrnsnpipnsitipmyd*cfskyr*fmerkysrlyss*skp*khwskyrlpilirni*
sc*hlgr*iiik*ylstpklgi*ypswfhltilvisknqnhllpiysqlptwsnnsnnn-
--

---KKKKKKKKKKKKKKKKKKKKKKKKKK

Frame C:
EITGFSFQLFNIISIWNVDQTSFNSYSLPIWLPAIQVGSSFSFGYIQKTDTVVPLSSQSV
VCQEIPTPSPTPSPSPCMINVSQSIVNSWRENTQDFIQVEVNLKNIGQNTVYQFSFEIFD
LVNIWGVELLSNNTYQLPSWVYSIPVGFISQFWLYPKIKTIFYQFIHNYQLGQTTPTTT-
--

---kkkkkkkkkkkkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AA19 (FC-AA19Q) /CSM/FC/FC-AA/FC-AA19Q.Seq.d/                     1068   0.0
VHN694 (VHN694Q) /CSM/VH/VHN6-D/VHN694Q.Seq.d/                        589   e-167
VHJ424 (VHJ424Q) /CSM/VH/VHJ4-A/VHJ424Q.Seq.d/                        587   e-167
VHB222 (VHB222Q) /CSM/VH/VHB2-A/VHB222Q.Seq.d/                        575   e-163
VHO515 (VHO515Q) /CSM/VH/VHO5-A/VHO515Q.Seq.d/                        567   e-161
VHD539 (VHD539Q) /CSM/VH/VHD5-B/VHD539Q.Seq.d/                        553   e-156
VHD343 (VHD343Q) /CSM/VH/VHD3-B/VHD343Q.Seq.d/                        551   e-156
VHE475 (VHE475Q) /CSM/VH/VHE4-D/VHE475Q.Seq.d/                        373   e-102
FC-AK17 (FC-AK17Q) /CSM/FC/FC-AK/FC-AK17Q.Seq.d/                      367   e-100
VFJ620 (VFJ620Q) /CSM/VF/VFJ6-A/VFJ620Q.Seq.d/                        363   2e-99

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U20608|U20608.1 Dictyostelium discoideum unknown spore germination-specific protein-like protein, orf1, orf2 and orf3 genes, complete cds.   880  0.0  3
AC139149|AC139149.5 Homo sapiens chromosome 17, clone RP13-766D20, complete sequence.    50  0.032  1
AC137896|AC137896.4 Homo sapiens chromosome 17 clone RP11-765O14 map 17, 7 ordered pieces.    50  0.032  1
AC097593|AC097593.7 Rattus norvegicus clone CH230-162J2, WORKING DRAFT SEQUENCE, 10 unordered pieces.    40  0.075  4
AP004895|AP004895.1 Lotus japonicus genomic DNA, chromosome 4, clone:LjT02D01, TM0039.    46  0.50  1
AC127442|AC127442.3 Rattus norvegicus clone CH230-268C17, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    36  0.61  4
AQ032753|AQ032753.1 HS_2213_B1_F12_MF CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=2213 Col=23 Row=L, genomic survey sequence.    36  0.92  2
BX005065|BX005065.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-163B2.    34  1.1  4
BM693439|BM693439.1 UI-E-CK1-afm-f-20-0-UI.r1 UI-E-CK1 Homo sapiens cDNA clone UI-E-CK1-afm-f-20-0-UI 5', mRNA sequence.    36  1.1  2
BX092075|BX092075.1 RZPD Homo sapiens cDNA clone IMAGp998M0372 = IMAGE:22773 3' EST.    36  1.2  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T18270(T18270) hypothetical protein - slime mold (Dictyostelium ...   275   1e-72
(P22698) RecName: Full=Spore germination protein 270-11;  &B3562...    62   5e-09
AC116956_44(AC116956|pid:none) Dictyostelium discoideum chromoso...    44   0.003
(Q5NAT0) RecName: Full=Endoglucanase 2;          EC=3.2.1.4; Alt...    38   0.20
CP000976_706(CP000976|pid:none) Borrelia duttonii Ly, complete g...    38   0.20
AM778937_42(AM778937|pid:none) Microcystis aeruginosa PCC 7806 g...    37   0.44
BT000696_1(BT000696|pid:none) Arabidopsis thaliana clone RAFL07-...    37   0.44
D88417_1(D88417|pid:none) Cotton mRNA for endo-1,4-beta-glucanas...    37   0.57
D89249_1(D89249|pid:none) Schizosaccharomyces pombe mRNA, partia...    36   0.98
(Q9M995) RecName: Full=Endoglucanase 5;          EC=3.2.1.4; Alt...    35   2.2

 psg: 0.75  gvh: 0.52  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 2.02  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for FC-AA19 is nuc

>FC-AA19F.Seq
CAGAAATCACTGGTTTTTCATTCCAATTATTTAATATTATCAGTATTTGGAATGTTGATC
AAACATCATTCAATAGCTACAGTCTTCCAATTTGGTTACCAGCCATTCAAGTTGGTTCAT
CATTCAGTTTTGGTTATATTCAAAAAACTGATACTGTTGTCCCACTCTCCTCCCAATCAG
TTGTATGTCAAGAAATTCCAACCCCATCCCCAACTCCATCACCATCCCCATGTATGATTA
ATGTTTCTCAAAGTATCGTTAATTCATGGAGAGAAAATACTCAAGACTTTATTCAAGTTG
AAGTAAACCTTAAAAACATTGGTCAAAATACCGTTTACCAATTCTCATTCGAAATATTTG
ATCTTGTTAACATTTGGGGCGTTGAATTATTATCAAATAATACTTATCAACTCCCAAGTT
GGGTATATAGTATCCCAGTTGGTTTCATCTCACAATTTTGGTTATATCCAAAAATCAAAA
CCATCTTTTACCAATTTATTCACAATTACCAACTTGGTCAAACAACTCCAACAACAACT-
---------