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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AA18
Library FC
(Link to library)
Clone ID FC-AA18
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15943-1
Original site URL
Representative seq. ID FC-AA18P
(Link to Original site)
Representative DNA sequence 
>FC-AA18 (FC-AA18Q) /CSM/FC/FC-AA/FC-AA18Q.Seq.d/
AAAAGATAGAGAAGAAAGAAAACTTGAACGTGAGAAGGAACTTGAACGTGAACGTGAGAA
AGAACTTGAGCGTGAGCGTGAACGTGAACAACGTCGTCTTGAAAGAGAGAGGGATGAAAT
TGAACGTGAGCAACGTCGTCTTGAAAAAATTCAACACGAAAAGGAGGAAAAGGAAAGATT
AGAAAGAGAATTAAAAGAAAAAGAAGAACGTGAACTCAAAGAAAAGAAAGACAAGATAAA
TTAGACCAATCTCAAAAAGAAAAACAAATTAAAATTGAATCTGAAAAAGAAAGAAGAAAA
TTAGTTTTAGAGAAAACAAAATCAACTTTAACACATGATCAATTAATTAAATTAACAAAA
TCAAATATTACAATTACCAATACAAATAATACAAATACAAATACAAATAACAATAAAAAT
AAAAATAATAAATTAAAATCAACATCATTTGGATTACAAATTGATCATGAAGGTATTAGA
ATTAAAAAGGAACAATTAAAATTAGAXXXXXXXXXXGAAAATAGAAAAGCAGCAATTGAC
GAAATCTCAAAATTACCAAAAAAATCACCACTTTATAATCCAAATAAAAAATTCTATGTT
AAAATTGTAAAATCAAATGAAAAAGCTAAAAAGAAACAAATTTTTGATAAACAAAAAATT
GAAAATCTTAAAGCCACTGCTAAAAATGAATTACAAAAAGAACAAGATGCTGAATTTGAT
GATTGGGAAATTGCAAAATAAAAAAAAAAAAAAAAAAAAAGAAATAAATATTATTTTTTT
AATTATTAAAAAAAAAAAAAAAAAAAAAA
sequence update 1996.12.12
Translated Amino Acid sequence 
kr*rrkkt*t*egt*t*t*ert*a*a*t*ttss*kreg*n*t*atss*knstrkggkgki
rkrikrkrrt*TQRKERQDKLDQSQKEKQIKIESEKERRKLVLEKTKSTLTHDQLIKLTK
SNITITNTNNTNTNTNNNKNKNNKLKSTSFGLQIDHEGIRIKKEQLKL---

---ENRKAAIDEISKLPKKSPLYNPNKKFYVKIVKSNEKAKKKQIFDKQKIENLKATAKN
ELQKEQDAEFDDWEIAK*kkkkkkrnkyyffny*kkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kr*rrkkt*t*egt*t*t*ert*a*a*t*ttss*kreg*n*t*atss*knstrkggkgki
rkrikrkrrt*TQRKERQDKLDQSQKEKQIKIESEKERRKLVLEKTKSTLTHDQLIKLTK
SNITITNTNNTNTNTNNNKNKNNKLKSTSFGLQIDHEGIRIKKEQLKL---

---ENRKAAIDEISKLPKKSPLYNPNKKFYVKIVKSNEKAKKKQIFDKQKIENLKATAKN
ELQKEQDAEFDDWEIAK*kkkkkkrnkyyffny*kkkkkk

Frame B:
kdreerklerekelererekelererereqrrlererdeiereqrrlekiqhekeekerl
erelkekeerelkekkdkin*tnlkkknklklnlkkkeen*f*rkqnql*hmin*ln*qn
qilqlpiqiiqiqiqitikikiin*nqhhldyklimkvlelkrnn*n*---

---kiekqqltksqnyqknhhfiiqiknsmlkl*nqmkklkrnkflinkklkilkpllkm
nykknkmlnlmigklqnkkkkkkkeiniifliikkkkkkk

Frame C:
kiekkenlnvrrnlnvnvrknlsvsvnvnnvvlkergmklnvsnvvlkkfntkrrkrkd*
ken*kkkknvnskkrktr*irpiskrktn*n*i*krkkkisfrenkinfnt*sin*inki
kyynyqyk*ykykyk*q*k*k**ikiniiwitn*s*ry*n*kgtikir---

---k*kssn*rnlkitkkittl*sk*kilc*nckik*ks*ketnf**tkn*ks*shc*k*
itkrtrc*i**lgnckikkkkkkkk*ilff*llkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLJ113 (SLJ113Q) /CSM/SL/SLJ1-A/SLJ113Q.Seq.d/                        202   6e-51
SLI189 (SLI189Q) /CSM/SL/SLI1-D/SLI189Q.Seq.d/                        202   6e-51
SLE688 (SLE688Q) /CSM/SL/SLE6-D/SLE688Q.Seq.d/                        202   6e-51
SLE655 (SLE655Q) /CSM/SL/SLE6-C/SLE655Q.Seq.d/                        202   6e-51
FC-AA18 (FC-AA18Q) /CSM/FC/FC-AA/FC-AA18Q.Seq.d/                      202   6e-51
AFJ534 (AFJ534Q) /CSM/AF/AFJ5-B/AFJ534Q.Seq.d/                        202   6e-51
AFB739 (AFB739Q) /CSM/AF/AFB7-B/AFB739Q.Seq.d/                        165   1e-39
SLD814 (SLD814Q) /CSM/SL/SLD8-A/SLD814Q.Seq.d/                        123   4e-27
SLG793 (SLG793Q) /CSM/SL/SLG7-D/SLG793Q.Seq.d/                        109   7e-23
VSD589 (VSD589Q) /CSM/VS/VSD5-D/VSD589Q.Seq.d/                         86   1e-15
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BV076882|BV076882.1 S212P6835FB1.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site.    48  0.17  1
BH155537|BH155537.1 ENTSQ27TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46  0.65  1
AC129466|AC129466.4 Rattus norvegicus clone CH230-6B20, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    46  0.65  1
AC094384|AC094384.9 Rattus norvegicus clone CH230-3P10, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46  0.65  1
BI153307|BI153307.1 602917167F1 NCI_CGAP_Lu29 Mus musculus cDNA clone IMAGE:5067640 5', mRNA sequence.    46  0.65  1
AC105642|AC105642.4 Rattus norvegicus clone CH230-203H19, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38  0.73  2
BH944439|BH944439.1 obu89a11.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    36  0.81  2
AZ542001|AZ542001.1 ENTFE33TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40  0.90  2
BH161111|BH161111.1 ENTRD67TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40  0.95  2
AL445064|AL445064.1 Thermoplasma acidophilum complete genome; segment 2/5.    40  1.6  3
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR382126_991(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    34   6.0
protein update 2008.11.10
PSORT 

 psg: 0.40  gvh: 0.26  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.02
 nuc: 0.21  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for FC-AA18 is nuc
5' end seq. ID FC-AA18F
5' end seq. 
>FC-AA18F.Seq
AAAAGATAGAGAAGAAAGAAAACTTGAACGTGAGAAGGAACTTGAACGTGAACGTGAGAA
AGAACTTGAGCGTGAGCGTGAACGTGAACAACGTCGTCTTGAAAGAGAGAGGGATGAAAT
TGAACGTGAGCAACGTCGTCTTGAAAAAATTCAACACGAAAAGGAGGAAAAGGAAAGATT
AGAAAGAGAATTAAAAGAAAAAGAAGAACGTGAACTCAAAGAAAAGAAAGACAAGATAAA
TTAGACCAATCTCAAAAAGAAAAACAAATTAAAATTGAATCTGAAAAAGAAAGAAGAAAA
TTAGTTTTAGAGAAAACAAAATCAACTTTAACACATGATCAATTAATTAAATTAACAAAA
TCAAATATTACAATTACCAATACAAATAATACAAATACAAATACAAATAACAATAAAAAT
AAAAATAATAAATTAAAATCAACATCATTTGGATTACAAATTGATCATGAAGGTATTAGA
ATTAAAAAGGAACAATTAAAATTAGA----------
Length of 5' end seq. 506
3' end seq. ID FC-AA18Z
3' end seq. 
>FC-AA18Z.Seq
----------GAAAATAGAAAAGCAGCAATTGACGAAATCTCAAAATTACCAAAAAAATC
ACCACTTTATAATCCAAATAAAAAATTCTATGTTAAAATTGTAAAATCAAATGAAAAAGC
TAAAAAGAAACAAATTTTTGATAAACAAAAAATTGAAAATCTTAAAGCCACTGCTAAAAA
TGAATTACAAAAAGAACAAGATGCTGAATTTGATGATTGGGAAATTGCAAAATAAAAAAA
AAAAAAAAAAAAAAGAAATAAATATTATTTTTTTAATTATTAAAAAAAAAAAAAAAAAAA
AAA
Length of 3' end seq. 293
Connected seq. ID FC-AA18P
Connected seq. 
>FC-AA18P.Seq
AAAAGATAGAGAAGAAAGAAAACTTGAACGTGAGAAGGAACTTGAACGTGAACGTGAGAA
AGAACTTGAGCGTGAGCGTGAACGTGAACAACGTCGTCTTGAAAGAGAGAGGGATGAAAT
TGAACGTGAGCAACGTCGTCTTGAAAAAATTCAACACGAAAAGGAGGAAAAGGAAAGATT
AGAAAGAGAATTAAAAGAAAAAGAAGAACGTGAACTCAAAGAAAAGAAAGACAAGATAAA
TTAGACCAATCTCAAAAAGAAAAACAAATTAAAATTGAATCTGAAAAAGAAAGAAGAAAA
TTAGTTTTAGAGAAAACAAAATCAACTTTAACACATGATCAATTAATTAAATTAACAAAA
TCAAATATTACAATTACCAATACAAATAATACAAATACAAATACAAATAACAATAAAAAT
AAAAATAATAAATTAAAATCAACATCATTTGGATTACAAATTGATCATGAAGGTATTAGA
ATTAAAAAGGAACAATTAAAATTAGA----------GAAAATAGAAAAGCAGCAATTGAC
GAAATCTCAAAATTACCAAAAAAATCACCACTTTATAATCCAAATAAAAAATTCTATGTT
AAAATTGTAAAATCAAATGAAAAAGCTAAAAAGAAACAAATTTTTGATAAACAAAAAATT
GAAAATCTTAAAGCCACTGCTAAAAATGAATTACAAAAAGAACAAGATGCTGAATTTGAT
GATTGGGAAATTGCAAAATAAAAAAAAAAAAAAAAAAAAAGAAATAAATATTATTTTTTT
AATTATTAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 799
Full length Seq ID -
Full length Seq. -
Length of full length seq. -