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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AA16
Library FC
(Link to library)
Clone ID FC-AA16
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15090-1
Original site URL
Representative seq. ID FC-AA16E
(Link to Original site)
Representative DNA sequence 
>FC-AA16 (FC-AA16Q) /CSM/FC/FC-AA/FC-AA16Q.Seq.d/
GGGCAGGATCATCATTTAATACTAAAGATTCAACAATAATTGCAAAAACTCAATTTTATC
AAAAAAATATTCAAATTTATAAAGGTGATCAATTATCACAAACCATTCAATTAATTCAAA
ATCCAACTCAAATTAATTATTTTGATCATGAAAAATCTCAAACTTCACTTTTAGCTATAA
CTGAATTTAATCAATTAAAAATTTTTGATCCAAGACAATCTTCAAATAATTGTTGTATTC
AAAAGTTTACTCCAGGAACATCATGGTTATATTCAATGGCGATTTCATCAAATTCAGAAT
ATATAGCAGTTGGTGGATCATCAAGAACTGTTAGTGTTTATGATACAAAGAGATGGAATA
ATTCAGGTAATTGGAAGAATTGTTTAAAGTACGAGATTACAAATATTGAATTTTCAAATA
CAAGACCTTCGATTTGTTATGTTGGTGGATTGGATTCAGAAGTTTTAGCAGGTGAATGGA
ATGGTTCAAGTGGTGTCGATCATTTCACTGGTCTTAGAGTTGATTCCAAATGGTTAGGTT
TATCAAAATTAAGAGATCAAGAATATATATTTGGTTATACTGGTTCTTCTTCAATCTATT
ATATCGATAATTGTGATAAATTATTCCAAGGTACTTTATCTGAAAAATCATTACACAATA
CTTCAAAACAAGAAAAAAAACAACAACATCAATTAAATAATCAATTAAAACAACAACAAC
AAAAAGATAAACAAGAACAACAACAACAACAACAACAACCAAATGAACAAGTTATGCAAG
AAAGTGATAATAGTAATAGTAATAATAATAATAATAATAATGAAACAACAATTGGTAAAG
CAAGATCAATTGAAGGTTCACCAACAGGTGATGAAAAACATCAATCAAAAAAATTAAAAA
AGGAAGAATAAATAAATAATTTATTATTAAAAC
sequence update 1996.12.12
Translated Amino Acid sequence 
AGSSFNTKDSTIIAKTQFYQKNIQIYKGDQLSQTIQLIQNPTQINYFDHEKSQTSLLAIT
EFNQLKIFDPRQSSNNCCIQKFTPGTSWLYSMAISSNSEYIAVGGSSRTVSVYDTKRWNN
SGNWKNCLKYEITNIEFSNTRPSICYVGGLDSEVLAGEWNGSSGVDHFTGLRVDSKWLGL
SKLRDQEYIFGYTGSSSIYYIDNCDKLFQGTLSEKSLHNTSKQEKKQQHQLNNQLKQQQQ
KDKQEQQQQQQQPNEQVMQESDNSNSNNNNNNNETTIGKARSIEGSPTGDEKHQSKKLKK
EE*innlllk
Translated Amino Acid sequence (All Frames) 
Frame A:
gqdhhlilkiqq*lqklnfikkifkfikvinyhkpfn*fkiqlkliilimknlklhf*l*
lnlin*kfliqdnlqiivvfksllqehhgyiqwrfhqiqni*qlvdhqellvfmiqrdgi
iqvigriv*strlqilnfqiqdlrfvmlvdwiqkf*qvngmvqvvsiislvlelipng*v
yqn*eikniylvilvllqsiisiivinyskvlylknhytilqnkkknnnin*iin*nnnn
kkinknnnnnnnnqmnklckkviiviviiiiiimkqqlvkqdqlkvhqqvmkninqkn*k
rknk*iiyy*n


Frame B:
griii*y*rfnnncknsilskkysnl*r*siitnhsinsksnsn*lf*s*kisnftfsyn
*i*siknf*sktifk*llyskvysrnimvifngdfikfriysswwiiknc*cl*ykeme*
fr*leelfkvrdyky*ifkyktfdllcwwigfrsfsr*mewfkwcrsfhws*s*fqmvrf
ikikrsriyiwlywfffnllyr*l**iipryfi*kiitqyfktrkktttsik*siktttt
kr*trttttttttk*tsyark*************nnnw*skin*rftnr**ktsikkikk
grink*fiik


Frame C:
AGSSFNTKDSTIIAKTQFYQKNIQIYKGDQLSQTIQLIQNPTQINYFDHEKSQTSLLAIT
EFNQLKIFDPRQSSNNCCIQKFTPGTSWLYSMAISSNSEYIAVGGSSRTVSVYDTKRWNN
SGNWKNCLKYEITNIEFSNTRPSICYVGGLDSEVLAGEWNGSSGVDHFTGLRVDSKWLGL
SKLRDQEYIFGYTGSSSIYYIDNCDKLFQGTLSEKSLHNTSKQEKKQQHQLNNQLKQQQQ
KDKQEQQQQQQQPNEQVMQESDNSNSNNNNNNNETTIGKARSIEGSPTGDEKHQSKKLKK
EE*innlllk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AA16 (FC-AA16Q) /CSM/FC/FC-AA/FC-AA16Q.Seq.d/                     1291   0.0
SSM496 (SSM496Q) /CSM/SS/SSM4-D/SSM496Q.Seq.d/                         38   0.23
SSM157 (SSM157Q) /CSM/SS/SSM1-C/SSM157Q.Seq.d/                         38   0.23
SSL635 (SSL635Q) /CSM/SS/SSL6-B/SSL635Q.Seq.d/                         38   0.23
SSI165 (SSI165Q) /CSM/SS/SSI1-C/SSI165Q.Seq.d/                         38   0.23
SSH840 (SSH840Q) /CSM/SS/SSH8-B/SSH840Q.Seq.d/                         38   0.23
SSE837 (SSE837Q) /CSM/SS/SSE8-B/SSE837Q.Seq.d/                         38   0.23
SSD134 (SSD134Q) /CSM/SS/SSD1-B/SSD134Q.Seq.d/                         38   0.23
SSC440 (SSC440Q) /CSM/SS/SSC4-B/SSC440Q.Seq.d/                         38   0.23
SLE410 (SLE410Q) /CSM/SL/SLE4-A/SLE410Q.Seq.d/                         38   0.23
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   2e-06  20
AL161502|AL161502.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 14.    40   2e-05  9
AL021573|AL021573.1 Caenorhabditis elegans DNA *** SEQUENCING IN PROGRESS *** from clone.    38   6e-05  11
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   7e-05  18
AX392737|AX392737.1 Sequence 27 from Patent WO0212526.             32   1e-04  10
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           36   1e-04  20
AC123513|AC123513.1 Dictyostelium discoideum chromosome 2 map 2779865-2840915 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    34   1e-04  11
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    32   2e-04  18
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   3e-04  12
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            36   4e-04  17
dna update 2003.11.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM433160_1(AM433160|pid:none) Vitis vinifera contig VV78X023879....   127   5e-28
BT065157_1(BT065157|pid:none) Zea mays full-length cDNA clone ZM...   124   4e-27
AK101243_1(AK101243|pid:none) Oryza sativa Japonica Group cDNA c...   121   3e-26
CR954215_193(CR954215|pid:none) Ostreococcus tauri strain OTTH05...    90   1e-16
CP000594_264(CP000594|pid:none) Ostreococcus lucimarinus CCE9901...    87   6e-16
CP001330_537(CP001330|pid:none) Micromonas sp. RCC299 chromosome...    77   8e-13
CP000932_969(CP000932|pid:none) Campylobacter lari RM2100, compl...    47   7e-04
AF323581_1(AF323581|pid:none) Podospora anserina beta transducin...    46   0.002
CU074315_1(CU074315|pid:none) Podospora anserina genomic DNA, NW...    43   0.017
AF323582_1(AF323582|pid:none) Podospora anserina beta transducin...    43   0.017
protein update 2009. 7. 2
PSORT 

 psg: 0.73  gvh: 0.27  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for FC-AA16 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AA16E
Full length Seq. 
>FC-AA16E.Seq
GGGCAGGATCATCATTTAATACTAAAGATTCAACAATAATTGCAAAAACTCAATTTTATC
AAAAAAATATTCAAATTTATAAAGGTGATCAATTATCACAAACCATTCAATTAATTCAAA
ATCCAACTCAAATTAATTATTTTGATCATGAAAAATCTCAAACTTCACTTTTAGCTATAA
CTGAATTTAATCAATTAAAAATTTTTGATCCAAGACAATCTTCAAATAATTGTTGTATTC
AAAAGTTTACTCCAGGAACATCATGGTTATATTCAATGGCGATTTCATCAAATTCAGAAT
ATATAGCAGTTGGTGGATCATCAAGAACTGTTAGTGTTTATGATACAAAGAGATGGAATA
ATTCAGGTAATTGGAAGAATTGTTTAAAGTACGAGATTACAAATATTGAATTTTCAAATA
CAAGACCTTCGATTTGTTATGTTGGTGGATTGGATTCAGAAGTTTTAGCAGGTGAATGGA
ATGGTTCAAGTGGTGTCGATCATTTCACTGGTCTTAGAGTTGATTCCAAATGGTTAGGTT
TATCAAAATTAAGAGATCAAGAATATATATTTGGTTATACTGGTTCTTCTTCAATCTATT
ATATCGATAATTGTGATAAATTATTCCAAGGTACTTTATCTGAAAAATCATTACACAATA
CTTCAAAACAAGAAAAAAAACAACAACATCAATTAAATAATCAATTAAAACAACAACAAC
AAAAAGATAAACAAGAACAACAACAACAACAACAACAACCAAATGAACAAGTTATGCAAG
AAAGTGATAATAGTAATAGTAATAATAATAATAATAATAATGAAACAACAATTGGTAAAG
CAAGATCAATTGAAGGTTCACCAACAGGTGATGAAAAACATCAATCAAAAAAATTAAAAA
AGGAAGAATAAATAAATAATTTATTATTAAAAC
Length of full length seq. 933