>FC-AA15 (FC-AA15Q) /CSM/FC/FC-AA/FC-AA15Q.Seq.d/
CAAATCACACATAAAAGTTTAATATAAAAATGGGTACACCAATTAAAAAGATTAGTACAG
TAATTATTAAAATGGTTTCATCAGCCAATACTGGTTACTTTTATAGAACAACCAAAAGTG
CTTTACTCAGCACTAAAAAGTTATTACTTAGAAAATATGATCCAGTAATTAGACAACACG
TTTTATTTAAAGAAGAAAAAATTAGCAGAAAGAAAAATTAAAATTACTATCATTTTATTA
AATATATATATAATTTTTTTTTTTTATATCCAAAAAAAAAAAAAAAAAAAAAACAAATAA
ACAAATAAACAAACAAACAACATGAATGTATAAAGAAAACTCAAAACGACGCAATTCAAT
AATAAAACAACAATTACACAACAACAACAACAACAACTTTATTTACAATTTTTTATGAAC
AAGACATACAGATAAATAAATAAAAAAAAAAAATAAAAAAATAAAAAATAAAAAGATGGA
TAATATGTAACACTATAATCCATAAAATAAAAAGATTAAAAA

nht*KFNIKMGTPIKKISTVIIKMVSSANTGYFYRTTKSALLSTKKLLLRKYDPVIRQHV
LFKEEKISRKKN*nyyhfikyiynffflypkkkkkkkqink*tnkqhecikktqndaiq*
*nnnytttttttlftifyeqdiqink*kkkikk*kikrwiicntiihkikrlk

Frame A:
qithksli*kwvhqlkrlvq*llkwfhqpilvtfieqpkvlysalksyylenmiq*ldnt
fylkkkklaerkikitiillniyiifffyiqkkkkkknk*tnkqtnnmnv*rklkttqfn
nkttitqqqqqqlylqffmnktyr*inkkkk*knkk*kdg*yvtl*sik*kd*k


Frame B:
kshikv*ykngytn*kd*ysny*ngfisqywlll*nnqkcftqh*kvit*ki*ssn*ttr
fi*rrkn*qkeklkllsfy*iyi*ffffiskkkkkkktnkqinkqtt*mykenskrrnsi
ikqqlhnnnnnnfiynfl*trhtdk*ikkknkkiknkkmdnm*hynp*nkkik


Frame C:
nht*KFNIKMGTPIKKISTVIIKMVSSANTGYFYRTTKSALLSTKKLLLRKYDPVIRQHV
LFKEEKISRKKN*nyyhfikyiynffflypkkkkkkkqink*tnkqhecikktqndaiq*
*nnnytttttttlftifyeqdiqink*kkkikk*kikrwiicntiihkikrlk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF205 (VSF205Q) /CSM/VS/VSF2-A/VSF205Q.Seq.d/                        369   e-101
VHK837 (VHK837Q) /CSM/VH/VHK8-B/VHK837Q.Seq.d/                        369   e-101
FC-AA15 (FC-AA15Q) /CSM/FC/FC-AA/FC-AA15Q.Seq.d/                      369   e-101
VSG257 (VSG257Q) /CSM/VS/VSG2-C/VSG257Q.Seq.d/                        361   7e-99
VHL758 (VHL758Q) /CSM/VH/VHL7-C/VHL758Q.Seq.d/                         38   0.13
VHI580 (VHI580Q) /CSM/VH/VHI5-D/VHI580Q.Seq.d/                         38   0.13
SSE749 (SSE749Q) /CSM/SS/SSE7-C/SSE749Q.Seq.d/                         36   0.51
SFL259 (SFL259Q) /CSM/SF/SFL2-C/SFL259Q.Seq.d/                         36   0.51
CHG874 (CHG874Q) /CSM/CH/CHG8-D/CHG874Q.Seq.d/                         34   2.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   4e-04  11
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence.    40   6e-04  10
AL034559|AL034559.4 Plasmodium falciparum MAL3P7.                  38   0.001  11
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    36   0.001  12
AC137819|AC137819.19 Medicago truncatula clone mth2-21i24, complete sequence.    34   0.004  8
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    34   0.005  10
AL929358|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5.    30   0.007  13
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    34   0.012  11
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2.         34   0.031  13
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32   0.037  13

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR925677_217(CR925677|pid:none) Ehrlichia ruminantium str. Garde...    50   3e-05
(Q5FFJ4) RecName: Full=50S ribosomal protein L33;  &(Q5HBV6) Rec...    50   3e-05
(Q0BU03) RecName: Full=50S ribosomal protein L33;  &CP000394_801...    48   1e-04
(Q2W1A2) RecName: Full=50S ribosomal protein L33;  &AP007255_356...    47   2e-04
CU459003_1128(CU459003|pid:none) Magnetospirillum gryphiswaldens...    47   2e-04
(A8H9A8) RecName: Full=50S ribosomal protein L33;  &CP000851_381...    47   2e-04
(B0TQL3) RecName: Full=50S ribosomal protein L33;  &CP000931_430...    47   3e-04
(Q5NQY1) RecName: Full=50S ribosomal protein L33;  &AE008692_249...    47   3e-04
(A5FUI6) RecName: Full=50S ribosomal protein L33;  &CP000697_39(...    47   3e-04
(B1LUW6) RecName: Full=50S ribosomal protein L33;  &CP001001_352...    47   4e-04

 psg: 0.71  gvh: 0.46  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.46  mip: 0.08
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for FC-AA15 is mit

>FC-AA15E.Seq
CAAATCACACATAAAAGTTTAATATAAAAATGGGTACACCAATTAAAAAGATTAGTACAG
TAATTATTAAAATGGTTTCATCAGCCAATACTGGTTACTTTTATAGAACAACCAAAAGTG
CTTTACTCAGCACTAAAAAGTTATTACTTAGAAAATATGATCCAGTAATTAGACAACACG
TTTTATTTAAAGAAGAAAAAATTAGCAGAAAGAAAAATTAAAATTACTATCATTTTATTA
AATATATATATAATTTTTTTTTTTTATATCCAAAAAAAAAAAAAAAAAAAAAACAAATAA
ACAAATAAACAAACAAACAACATGAATGTATAAAGAAAACTCAAAACGACGCAATTCAAT
AATAAAACAACAATTACACAACAACAACAACAACAACTTTATTTACAATTTTTTATGAAC
AAGACATACAGATAAATAAATAAAAAAAAAAAATAAAAAAATAAAAAATAAAAAGATGGA
TAATATGTAACACTATAATCCATAAAATAAAAAGATTAAAAA