>FC-AA14 (FC-AA14Q) /CSM/FC/FC-AA/FC-AA14Q.Seq.d/
CTATGTCTGAAATCAAAACTGAAGAACTCGCTTGCATCTACTCCGGTCTTTTATTACAAG
ATGACGGTATTGAAATCACCGCTGATAAAATCAAAACCTTATTAGAAGCTGCCAACATCA
CTGTTGCTTCTCACTGGCCAGGTCTCTATGCTCGTTCATTAGCCAAAGTTAACATTCCAG
AATTATTATTAAATGCTGGTTCCTCAGGTGCCGCCGGTGCTGCCCCAGTTGCCGCTGCCA
CCAGCGCTGCTGCCCCAGCCGCCGCCGCCAAGAAAGAAACTAAAAAGGAAGAAGTTAAAA
AGGAAGAATCCGATGACGATATGGGTATGGGTTTATTCGACTAAAAGAACCAACTAAAGC
AAACTAATTTTCGAATGCTTATAGGAAGTTTCCTAGTTTAAAAAAAAATAAAAAAAAAAT
TAAAAAATAAA

MSEIKTEELACIYSGLLLQDDGIEITADKIKTLLEAANITVASHWPGLYARSLAKVNIPE
LLLNAGSSGAAGAAPVAAATSAAAPAAAAKKETKKEEVKKEESDDDMGMGLFD*knqlkq
tnfrmligsflv*kkikkklknk

Frame A:
lclksklknslastpvfyykmtvlksplikskpy*klptslllltgqvsmlvh*pkltfq
nyy*mlvpqvppvlpqlplppallpqpppprkklkrkklkrknpmtiwvwvystkrtn*s
klifecl*evs*fkkk*kkn*ki


Frame B:
yv*nqn*rtrlhllrsfitr*ry*nhr**nqnlirscqhhccfslarslcsfisqs*hsr
iiikcwflrcrrccpscrchqrccpsrrrqern*kgrs*kgrir*rygygfirlkeptka
n*fsnayrkfpslkknkkkikk*


Frame C:
MSEIKTEELACIYSGLLLQDDGIEITADKIKTLLEAANITVASHWPGLYARSLAKVNIPE
LLLNAGSSGAAGAAPVAAATSAAAPAAAAKKETKKEEVKKEESDDDMGMGLFD*knqlkq
tnfrmligsflv*kkikkklknk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ342 (VSJ342Q) /CSM/VS/VSJ3-B/VSJ342Q.Seq.d/                        791   0.0
VSH794 (VSH794Q) /CSM/VS/VSH7-D/VSH794Q.Seq.d/                        791   0.0
VSH305 (VSH305Q) /CSM/VS/VSH3-A/VSH305Q.Seq.d/                        791   0.0
VSF415 (VSF415Q) /CSM/VS/VSF4-A/VSF415Q.Seq.d/                        791   0.0
VSE775 (VSE775Q) /CSM/VS/VSE7-D/VSE775Q.Seq.d/                        791   0.0
VSE548 (VSE548Q) /CSM/VS/VSE5-B/VSE548Q.Seq.d/                        791   0.0
VSD866 (VSD866Q) /CSM/VS/VSD8-C/VSD866Q.Seq.d/                        791   0.0
VSD375 (VSD375Q) /CSM/VS/VSD3-D/VSD375Q.Seq.d/                        791   0.0
VHJ484 (VHJ484Q) /CSM/VH/VHJ4-D/VHJ484Q.Seq.d/                        791   0.0
VHC539 (VHC539Q) /CSM/VH/VHC5-B/VHC539Q.Seq.d/                        791   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X56193|X56193.1 D. discoideum mRNA for ribosomal acidic phosphoprotein P1.   791   0.0    1
X56192|X56192.1 D. discoideum mRNA for ribosomal acidic phosphoprotein P2.    76   1e-20  4
BM356243|BM356243.1 kx61d08.y1 Parastrongyloides trichosuri FL SL1 TOPO v1 Murphy Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:O01504 O01504 SIMILARITY TO 60S ACIDIC RIBOSOMAL PROTEIN P2. [1] ;, mRNA sequence.    50   3e-05  2
BQ580619|BQ580619.1 pz25f10.y1 Pratylenchus penetrans mixed stage SL1 TOPO v1 Pratylenchus penetrans cDNA 5' similar to TR:Q9U1X9 Q9U1X9 Y62E10A.1 PROTEIN. [1] ;, mRNA sequence.    46   8e-05  2
AW114407|AW114407.1 rs51e01.y1 Sommer Pristionchus Pristionchus pacificus cDNA 5' similar to WP:Y62E10A.D CE22694 ;contains element PTR5 repetitive element ;, mRNA sequence.    42   1e-04  2
CA994794|CA994794.1 Hc_L4_25H01_SKPL Haemonchus contortus L4 SL1 from David Knox Haemonchus contortus cDNA clone Hc_L4_25H01 5' similar to Y62E10A.1 CE22694 locus:rpa-2 status:Confirmed TR:Q9U1X9, mRNA sequence.    44   4e-04  2
CB042923|CB042923.1 Tc_L3_10B07_SKPL Teladorsagia circumcincta L3 library Teladorsagia circumcincta cDNA clone Tc_L3_10B07 5' similar to Q9U1X9 Y62E10A.1 protein. Caenorhabditis elegans, mRNA sequence.    44   4e-04  2
BM174143| (AL132865) predicted using Genefinder~contains similarity to Pfam, mRNA sequence.    44   4e-04  2
CB043809|CB043809.1 Tc_L4_20G04_SKPL Teladorsagia circumcincta L4 library Teladorsagia circumcincta cDNA clone Tc_L4_20G04 5' similar to Q9U1X9 Y62E10A.1 protein. Caenorhabditis elegans, mRNA sequence.    44   4e-04  2
BM174001| (AL132865) predicted using Genefinder~contains similarity to Pfam, mRNA sequence.    44   4e-04  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P22684) RecName: Full=60S acidic ribosomal protein P1;  &R6DOP1...   134   1e-30
EU247206_1(EU247206|pid:none) Lycosa singoriensis clone LSsin168...    81   1e-14
AB180436_1(AB180436|pid:none) Plutella xylostella mRNA for 60S a...    74   2e-12
AK340936_1(AK340936|pid:none) Acyrthosiphon pisum ACYPI002961 mR...    72   6e-12
EZ048866_1(EZ048866|pid:none) TSA: Stomoxys calcitrans SC-4-42-2...    72   8e-12
BT043930_1(BT043930|pid:none) Salmo salar clone HM6_1114 ribosom...    72   8e-12
BT043929_1(BT043929|pid:none) Salmo salar clone HM4_2065 ribosom...    72   8e-12
(P91913) RecName: Full=60S acidic ribosomal protein P1;  &AC0870...    72   8e-12
DQ440047_1(DQ440047|pid:none) Aedes aegypti clone AE-294 60S aci...    72   8e-12
FM165433_1(FM165433|pid:none) Mytilus galloprovincialis mRNA for...    71   1e-11

 psg: 0.75  gvh: 0.50  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for FC-AA14 is cyt

>FC-AA14E.Seq
CTATGTCTGAAATCAAAACTGAAGAACTCGCTTGCATCTACTCCGGTCTTTTATTACAAG
ATGACGGTATTGAAATCACCGCTGATAAAATCAAAACCTTATTAGAAGCTGCCAACATCA
CTGTTGCTTCTCACTGGCCAGGTCTCTATGCTCGTTCATTAGCCAAAGTTAACATTCCAG
AATTATTATTAAATGCTGGTTCCTCAGGTGCCGCCGGTGCTGCCCCAGTTGCCGCTGCCA
CCAGCGCTGCTGCCCCAGCCGCCGCCGCCAAGAAAGAAACTAAAAAGGAAGAAGTTAAAA
AGGAAGAATCCGATGACGATATGGGTATGGGTTTATTCGACTAAAAGAACCAACTAAAGC
AAACTAATTTTCGAATGCTTATAGGAAGTTTCCTAGTTTAAAAAAAAATAAAAAAAAAAT
TAAAAAATAAA