>FC-AA13 (FC-AA13Q) /CSM/FC/FC-AA/FC-AA13Q.Seq.d/
XXXXXXXXXXAAAGCAAACTCGTGCTGGTCAACGTACCCGTTTCAAGGCTTTCGTCGTTG
TTGGTGATCACAACGGTCATGTAGGTCTCGGTGTTAAATGCGCTAAGGAAGTTGCCACCG
CCATTTCTGGTGCTATCGTTGCTGCCAAATTATCAGTCATCCCAGTTCGTCGTGGTTATT
GGGGTAACAAACTCGGTGCTCCACACACTGTCCCAACCAAAGTCACTGGTAAATGCGGTT
CCGTCGCTGTACGTCTCGTTCCAGCCCCAAGAGGTACTGGTATCGTTGCTGCTCGTGTTC
CAAAGAAATTACTCCAATATGCTGGTGTTGATGATGTTTACACATCTTCACGTGGTAAGA
CCAGAACCATGGGTAACTTTGTCATGGCCACTTTCTTCGCCATCACCAAGACCTTTGCTT
ACTTAACCCCAGATCTTTGGAGAGAAGTCAAATTAATCAAGACTCCATACCAAGAACACT
CTGCCAAATTATCCGAAAAACAACAATAAATCAATTTTAATTAATTTTTTACTGTTTT

---KQTRAGQRTRFKAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVIPVRRGYW
GNKLGAPHTVPTKVTGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKT
RTMGNFVMATFFAITKTFAYLTPDLWREVKLIKTPYQEHSAKLSEKQQ*infn*fftv

Frame A:
---KQTRAGQRTRFKAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVIPVRRGYW
GNKLGAPHTVPTKVTGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKT
RTMGNFVMATFFAITKTFAYLTPDLWREVKLIKTPYQEHSAKLSEKQQ*infn*fftv


Frame B:
---sklvlvnvpvsrlssllvittvm*vsvlnalrklpppflvlsllpnyqssqfvvvig
vtnsvlhtlsqpkslvnavpslyvsfqpqevlvslllvfqrnysnmlvlmmfthlhvvrp
epwvtlswplsspsprpllt*pqifgeksn*srlhtkntlpnypknnnksilinfllf


Frame C:
---anscwstypfqgfrrcw*sqrscrsrc*mr*gschrhfwcyrccqiishpssswllg
*qtrcsthcpnqshw*mrfrrctsrsspkrywyrccscskeitpicwc**clhiftw*dq
nhg*lchghflrhhqdlcllnprslersqinqdsiprtlcqiirkttinqf*lifycf

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE490 (SLE490Q) /CSM/SL/SLE4-D/SLE490Q.Seq.d/                       1047   0.0
SLC152 (SLC152Q) /CSM/SL/SLC1-C/SLC152Q.Seq.d/                       1047   0.0
FC-BA12 (FC-BA12Q) /CSM/FC/FC-BA/FC-BA12Q.Seq.d/                     1047   0.0
FC-AC19 (FC-AC19Q) /CSM/FC/FC-AC/FC-AC19Q.Seq.d/                     1047   0.0
FC-AA13 (FC-AA13Q) /CSM/FC/FC-AA/FC-AA13Q.Seq.d/                     1047   0.0
VHC440 (VHC440Q) /CSM/VH/VHC4-B/VHC440Q.Seq.d/                       1035   0.0
VFE388 (VFE388Q) /CSM/VF/VFE3-D/VFE388Q.Seq.d/                       1015   0.0
VHC570 (VHC570Q) /CSM/VH/VHC5-C/VHC570Q.Seq.d/                       1007   0.0
VHN687 (VHN687Q) /CSM/VH/VHN6-D/VHN687Q.Seq.d/                       1005   0.0
AFO729 (AFO729Q) /CSM/AF/AFO7-B/AFO729Q.Seq.d/                        997   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X56297|X56297.1 D.discoideum LLRep3 mRNA.                        989  0.0  1
AU011370|AU011370.1 Schizosaccharomyces pombe cDNA, clone spc11190.    90  2e-27  5
BW049012|BW049012.1 Ciona intestinalis cDNA, clone:cibd066d24, 5' end, single read.   113  3e-22  2
BW019807|BW019807.1 Ciona intestinalis cDNA, clone:rcibd066d24, 3' end, single read.   113  3e-22  2
AU010208|AU010208.1 Schizosaccharomyces pombe cDNA, clone spc05562.    90  6e-21  3
AU006568|AU006568.1 Schizosaccharomyces pombe cDNA, clone spc00131.    82  2e-20  3
AU011889|AU011889.1 Schizosaccharomyces pombe cDNA, clone spc06061.    90  2e-20  3
AL031798|AL031798.1 S.pombe chromosome III cosmid c576.           90  2e-20  5
AU008028|AU008028.1 Schizosaccharomyces pombe cDNA, clone spc02783.    90  7e-19  2
AU013664|AU013664.1 Schizosaccharomyces pombe cDNA, clone spc08473.    90  7e-19  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P27685) RecName: Full=40S ribosomal protein S2; AltName: Full=R...   332   3e-90
AC135958_8(AC135958|pid:none) Oryza sativa chromosome 3 BAC OSJN...   265   7e-70
AY088743_1(AY088743|pid:none) Arabidopsis thaliana clone 93867 m...   264   1e-69
AB008017_1(AB008017|pid:none) Arabidopsis thaliana RF12 mRNA, pa...   264   1e-69
(Q93VB8) RecName: Full=40S ribosomal protein S2-2;  &AB076984_1(...   264   1e-69
(Q8L8Y0) RecName: Full=40S ribosomal protein S2-1;  &AB008016_1(...   264   1e-69
AY085726_1(AY085726|pid:none) Arabidopsis thaliana clone 17415 m...   263   2e-69
EF086565_1(EF086565|pid:none) Picea sitchensis clone WS02731_C10...   262   3e-69
BT070612_1(BT070612|pid:none) Picea sitchensis clone WS02739_O17...   262   3e-69
EF146355_1(EF146355|pid:none) Populus trichocarpa clone WS0117_H...   262   3e-69

 psg: 0.85  gvh: 0.39  alm: 0.31  top: 0.73  tms: 0.07  mit: 0.42  mip: 0.16
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for FC-AA13 is cyt

>FC-AA13Z.Seq
----------AAAGCAAACTCGTGCTGGTCAACGTACCCGTTTCAAGGCTTTCGTCGTTG
TTGGTGATCACAACGGTCATGTAGGTCTCGGTGTTAAATGCGCTAAGGAAGTTGCCACCG
CCATTTCTGGTGCTATCGTTGCTGCCAAATTATCAGTCATCCCAGTTCGTCGTGGTTATT
GGGGTAACAAACTCGGTGCTCCACACACTGTCCCAACCAAAGTCACTGGTAAATGCGGTT
CCGTCGCTGTACGTCTCGTTCCAGCCCCAAGAGGTACTGGTATCGTTGCTGCTCGTGTTC
CAAAGAAATTACTCCAATATGCTGGTGTTGATGATGTTTACACATCTTCACGTGGTAAGA
CCAGAACCATGGGTAACTTTGTCATGGCCACTTTCTTCGCCATCACCAAGACCTTTGCTT
ACTTAACCCCAGATCTTTGGAGAGAAGTCAAATTAATCAAGACTCCATACCAAGAACACT
CTGCCAAATTATCCGAAAAACAACAATAAATCAATTTTAATTAATTTTTTACTGTTTT