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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AA12
Library FC
(Link to library)
Clone ID FC-AA12
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15087-1
Original site URL
Representative seq. ID FC-AA12E
(Link to Original site)
Representative DNA sequence 
>FC-AA12 (FC-AA12Q) /CSM/FC/FC-AA/FC-AA12Q.Seq.d/
AAATAATAATAATATAAAAATGGAAATTAAAGTTTTAGCTAAAAGAAAAGTATCAGCAAA
ACGTGCAAATGAAATATTAGGAAAATTTATTTTAGAAAGAAAAGCAAATGAAGAAAATAG
ATTATTTTTATCAGGAAATGCAACACCAACAGAGGATTTATTTCAAATTGTATCAAATTC
ATTAAATAAATTTCAAAATCATTTAAATGAATCAATTAATCCAGAATTAGCATTAACAGA
GAATAATAATAACAATAATACAACAAATGGCGACTCATCCGATGAAGCCTTAATTCCAAT
GAGTGATGATCAACCAAATCCATTAAAAGATTCTTCAAATACACTTCAAATTGACGATGG
TGATGTTTCAGAAAGATATTCTGATAGTGTTTCATCTTCAACAACAACAACAATAATTAC
AAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1996.12.12
Translated Amino Acid sequence 
NNNNIKMEIKVLAKRKVSAKRANEILGKFILERKANEENRLFLSGNATPTEDLFQIVSNS
LNKFQNHLNESINPELALTENNNNNNTTNGDSSDEALIPMSDDQPNPLKDSSNTLQIDDG
DVSERYSDSVSSSTTTTIITNKKKKKKKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
k***ykngn*sfs*kksisktck*nirkiyfrkksk*rk*iifirkcntnrgfisncikf
ik*isksfk*in*srisinre***q*ynkwrlir*slnsne**stksikrffkytsn*rw
*cfrkif**cfifnnnnnnykqkkkkkkkkk


Frame B:
NNNNIKMEIKVLAKRKVSAKRANEILGKFILERKANEENRLFLSGNATPTEDLFQIVSNS
LNKFQNHLNESINPELALTENNNNNNTTNGDSSDEALIPMSDDQPNPLKDSSNTLQIDDG
DVSERYSDSVSSSTTTTIITNKKKKKKKKKK


Frame C:
iiii*kwklkf*lkekyqqnvqmky*enlf*kekqmkkidyfyqemqhqqriyfklyqih
*infkii*mnqliqn*h*qriiitiiqqmathpmkp*fq*vminqih*kilqihfkltmv
mfqkdilivfhlqqqqq*lqtkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AA12 (FC-AA12Q) /CSM/FC/FC-AA/FC-AA12Q.Seq.d/                      841   0.0
VSJ183 (VSJ183Q) /CSM/VS/VSJ1-D/VSJ183Q.Seq.d/                        803   0.0
VHP434 (VHP434Q) /CSM/VH/VHP4-B/VHP434Q.Seq.d/                         44   0.002
VHI809 (VHI809Q) /CSM/VH/VHI8-A/VHI809Q.Seq.d/                         44   0.002
VHD421 (VHD421Q) /CSM/VH/VHD4-A/VHD421Q.Seq.d/                         44   0.002
VHA556 (VHA556Q) /CSM/VH/VHA5-C/VHA556Q.Seq.d/                         44   0.002
SSM337 (SSM337Q) /CSM/SS/SSM3-B/SSM337Q.Seq.d/                         44   0.002
AHO463 (AHO463Q) /CSM/AH/AHO4-C/AHO463Q.Seq.d/                         44   0.002
AHE304 (AHE304Q) /CSM/AH/AHE3-A/AHE304Q.Seq.d/                         44   0.002
AHC431 (AHC431Q) /CSM/AH/AHC4-B/AHC431Q.Seq.d/                         44   0.002
own update 2002.10. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   3e-19  13
AC116032|AC116032.2 Dictyostelium discoideum chromosome 2 map 4158743-4189373 strain AX4, complete sequence.    38   1e-15  8
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    42   1e-15  14
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    40   3e-15  9
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           42   5e-15  11
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    38   1e-14  11
AC116978|AC116978.1 Dictyostelium discoideum chromosome 2 map 4846697-4874480 strain AX4, *** SEQUENCING IN PROGRESS ***.    40   2e-14  10
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence.    42   2e-14  10
AC116919|AC116919.2 Dictyostelium discoideum chromosome 2 map complement(6245035-6206343) strain AX4, complete sequence.    42   5e-14  7
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    40   5e-14  7
dna update 2004. 2. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM204884_1039(FM204884|pid:none) Streptococcus equi subsp. zooep...    36   0.37
FM204883_1005(FM204883|pid:none) Streptococcus equi subsp. equi ...    35   1.1
(Q1J6D8) RecName: Full=30S ribosomal protein S20;  &(Q1JBK1) Rec...    33   2.4
AY619685_7(AY619685|pid:none) Uncultured gamma proteobacterium e...    33   4.1
CP000685_44(CP000685|pid:none) Flavobacterium johnsoniae UW101, ...    32   9.1
CP000053_984(CP000053|pid:none) Rickettsia felis URRWXCal2, comp...    32   9.1
CP001078_3082(CP001078|pid:none) Clostridium botulinum E3 str. A...    32   9.1
protein update 2009. 7. 2
PSORT 

 psg: 0.55  gvh: 0.32  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.05
 nuc: 0.28  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 20.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for FC-AA12 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AA12E
Full length Seq. 
>FC-AA12E.Seq
AAATAATAATAATATAAAAATGGAAATTAAAGTTTTAGCTAAAAGAAAAGTATCAGCAAA
ACGTGCAAATGAAATATTAGGAAAATTTATTTTAGAAAGAAAAGCAAATGAAGAAAATAG
ATTATTTTTATCAGGAAATGCAACACCAACAGAGGATTTATTTCAAATTGTATCAAATTC
ATTAAATAAATTTCAAAATCATTTAAATGAATCAATTAATCCAGAATTAGCATTAACAGA
GAATAATAATAACAATAATACAACAAATGGCGACTCATCCGATGAAGCCTTAATTCCAAT
GAGTGATGATCAACCAAATCCATTAAAAGATTCTTCAAATACACTTCAAATTGACGATGG
TGATGTTTCAGAAAGATATTCTGATAGTGTTTCATCTTCAACAACAACAACAATAATTAC
AAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 454