FC-AA11
Library FC
(Link to library)
Clone ID FC-AA11
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16273-1
Original site URL
Representative seq. ID FC-AA11P
(Link to Original site)
Representative DNA sequence
>FC-AA11 (FC-AA11Q) /CSM/FC/FC-AA/FC-AA11Q.Seq.d/
GGTGAATTAATTGTTGAACCAGTTGATCAAAAATATATTTTCAAGACTGAACGTAAAGTT
CCAAGAATGGGTGTTATGATTGTTGGTTTATGTGGTAACAATGGTACAACAGTAGTTGGT
GGTGTTATTGCCAATCGTGAAGGTTTATGTTGGAATACCAAACAAGGTCTTCAAACACCA
AACTATTTTGGTTCAGTTGTTATGTCCTCAACCATTAGAATGGGTATGGATGAAAATGGT
TGTGATGCCTACATTCCATTAAAGAACTTAATCCCAATGGTTCATCCAAACGATATTGTT
TTCGGTGGTTGGGATATCAACAATGCCAACTTAGCTGATGCCATGCAACGTGCTCAAGTT
TTTGACTATGATTTACAAGTTCAATTGATTCCACACATGAAAAACATCACTCCACTCCCA
TCCATCTATTTCCCAGACTTTATCGCTGCAAATCAAAAGGATCGTGCCAACAATGTTTTA
ACTGGTACCAAAAAGGAACAAATGGAACAAATTAGAAAAGATATTAGAGATTTCAAAGAA
TCAAACAAACTCGACACCGTCGTCGTTATGTGGTCCGCAAACACTGAACGTTTCTCTTCA
CTCGTTCCAGGTGTCAATGATACCATCGAAAXXXXXXXXXXGTGAACACCCAGATCACGT
TATTGTCATCAAATACGTCCCATACGTAGGTGATTCAAAGAGAGCTATGGATGAATATAC
CTCACAAATCTTTATGGGTGGTCACAATACAATCGTTCTCCACAACACTTGTGAAGATTC
TTTATTAGCCGCTCCAATTATTTTAGATTTAGTTATTCTTGCTGAAGTTACTAGTCGTAT
CACAATGAAAAAACAAGATGATGATCAATTTGCTACTTTCCATCCAGTTTTATCATTATT
ATCATACCTCCTTAAAGCACCAATTGTTCCAAAACATGCTACCGTTGTAAATGCACTCTT
CAAACAAAGAGCCTGCATAGAAAATATCTTCAAAGCATGCGTTGGTATCGCTCCAGATAA
TAACATGTTATTAGAACAAAGATTATAAATAATACAAACAATTTCAATAATAATAACATT
TATTTAAAAAATAACTTCCATTTATAATAAAATAATCTTTTGTAAAATTTAATAACTCTA
AAA
sequence update 1996.12.12
Translated Amino Acid sequence
GELIVEPVDQKYIFKTERKVPRMGVMIVGLCGNNGTTVVGGVIANREGLCWNTKQGLQTP
NYFGSVVMSSTIRMGMDENGCDAYIPLKNLIPMVHPNDIVFGGWDINNANLADAMQRAQV
FDYDLQVQLIPHMKNITPLPSIYFPDFIAANQKDRANNVLTGTKKEQMEQIRKDIRDFKE
SNKLDTVVVMWSANTERFSSLVPGVNDTIE---

---EHPDHVIVIKYVPYVGDSKRAMDEYTSQIFMGGHNTIVLHNTCEDSLLAAPIILDLV
ILAEVTSRITMKKQDDDQFATFHPVLSLLSYLLKAPIVPKHATVVNALFKQRACIENIFK
ACVGIAPDNNMLLEQRL*iiqtisiiitfi*kitsiynkiifcki**l*


Translated Amino Acid sequence (All Frames)
Frame A:
GELIVEPVDQKYIFKTERKVPRMGVMIVGLCGNNGTTVVGGVIANREGLCWNTKQGLQTP
NYFGSVVMSSTIRMGMDENGCDAYIPLKNLIPMVHPNDIVFGGWDINNANLADAMQRAQV
FDYDLQVQLIPHMKNITPLPSIYFPDFIAANQKDRANNVLTGTKKEQMEQIRKDIRDFKE
SNKLDTVVVMWSANTERFSSLVPGVNDTIE---

---vntqitllssntsht*viqrelwmniphkslwvvtiqsfsttlvkily*plqlf*i*
lfllkllvvsq*knkmminlllsiqfyhyyhtslkhqlfqnmlpl*mhssnkepa*kiss
khalvslqiitcy*nkdyk*ykqfq***hlfkk*lpfiik*sfvkfnnsk

Frame B:
vn*llnqliknifsrlnvkfqewvl*llvyvvtmvqq*lvvllpivkvyvgipnkvfkhq
tilvqllcpqplewvwmkmvvmptfh*rt*sqwfiqtilfsvvgistmpt*lmpcnvlkf
ltmiykfn*fht*ktslhshpsisqtlslqikrivptmf*lvpkrnkwnklekileiskn
qtnstpsslcgpqtlnvslhsfqvsmipsk---

---*tprsrychqirpirr*fkesyg*iyltnlygwsqynrspqhl*rffisrsnyfrfs
ysc*sy*syhnektr**sicyfpssfiiiiipp*stncsktcyrckctlqtkslhrkylq
smrwyrsr**hvirtkiinntnnfnnnniylknnfhl**nnll*nlitlk

Frame C:
*inc*ts*skiyfqd*t*sskngcydcwfmw*qwynsswwcycqs*rfmleyqtrssntk
lfwfscyvlnh*ngyg*kwl*clhsikelnpngsskrycfrwlgyqqcqls*chatcssf
*l*ftssidsthekhhstpihlfprlyrckskgscqqcfnwyqkgtngtn*kry*rfqri
kqtrhrrryvvrkh*tflftrsrcq*yhr---

---EHPDHVIVIKYVPYVGDSKRAMDEYTSQIFMGGHNTIVLHNTCEDSLLAAPIILDLV
ILAEVTSRITMKKQDDDQFATFHPVLSLLSYLLKAPIVPKHATVVNALFKQRACIENIFK
ACVGIAPDNNMLLEQRL*iiqtisiiitfi*kitsiynkiifcki**l*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AA11 (FC-AA11Q) /CSM/FC/FC-AA/FC-AA11Q.Seq.d/ 2206 0.0
FC-010 (FC-010Q) /CSM/CG/CG-FC/FC-010Q.Seq.d/ 1251 0.0
VFG706 (VFG706Q) /CSM/VF/VFG7-A/VFG706Q.Seq.d/ 1181 0.0
SLB678 (SLB678Q) /CSM/SL/SLB6-D/SLB678Q.Seq.d/ 1061 0.0
SLD414 (SLD414Q) /CSM/SL/SLD4-A/SLD414Q.Seq.d/ 995 0.0
SLB787 (SLB787Q) /CSM/SL/SLB7-D/SLB787Q.Seq.d/ 995 0.0
SLI647 (SLI647Q) /CSM/SL/SLI6-B/SLI647Q.Seq.d/ 993 0.0
FC-IC0800 (FC-IC0800Q) /CSM/FC-IC/FC-IC0800Q.Seq.d/ 993 0.0
FC-AN23 (FC-AN23Q) /CSM/FC/FC-AN/FC-AN23Q.Seq.d/ 991 0.0
SLD258 (SLD258Q) /CSM/SL/SLD2-C/SLD258Q.Seq.d/ 987 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

E17392|E17392.1 gDNA encoding inositol-1-phosphate synthase. 58 1e-16 3
E13612|E13612.1 gDNA encoding inositol-1-phosphate synthase. 58 1e-16 3
AZ675584|AZ675584.1 ENTKP25TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 66 2e-11 2
AZ679596|AZ679596.1 ENTKR11TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 66 2e-11 2
BH155145|BH155145.1 ENTTB84TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 66 2e-11 2
Y11270|Y11270.1 E.histolytica INO1 gene. 62 2e-11 3
AY096554|AY096554.1 Arabidopsis thaliana putative myo-inositol-1-phosphate synthase (At5g10170) mRNA, complete cds. 50 2e-07 3
AY065415|AY065415.1 Arabidopsis thaliana putative myo-inositol-1-phosphate synthase (At5g10170) mRNA, complete cds. 50 2e-07 3
BH162932|BH162932.1 ENTQW03TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 52 2e-07 2
BJ097181|BJ097181.1 Xenopus laevis cDNA clone:XL173j23, 5' end, single read. 46 4e-07 3
dna update 2003. 7.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P42802) RecName: Full=Inositol-3-phosphate synthase; E... 250 7e-65
DQ323907_1(DQ323907|pid:none) Glycine max myo-inositol-1-phospha... 248 4e-64
(Q9SSV4) RecName: Full=Inositol-3-phosphate synthase; E... 246 8e-64
(Q9FYV1) RecName: Full=Inositol-3-phosphate synthase; E... 246 1e-63
(Q9LW96) RecName: Full=Inositol-3-phosphate synthase; E... 246 1e-63
(Q96348) RecName: Full=Inositol-3-phosphate synthase; E... 246 1e-63
AB236829_1(AB236829|pid:none) Trifolium pratense RNA for putativ... 245 2e-63
EU714004_1(EU714004|pid:none) Cicer arietinum L-myo inositol-1 p... 245 2e-63
AF433879_1(AF433879|pid:none) Suaeda maritima subsp. salsa myo-i... 245 2e-63
(Q40271) RecName: Full=Inositol-3-phosphate synthase; E... 245 2e-63
protein update 2009. 4.13
PSORT

psg: 0.75 gvh: 0.38 alm: 0.26 top: 0.73 tms: 0.07 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.23 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

52.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for FC-AA11 is nuc

5' end seq. ID FC-AA11F
5' end seq.
>FC-AA11F.Seq
GGTGAATTAATTGTTGAACCAGTTGATCAAAAATATATTTTCAAGACTGAACGTAAAGTT
CCAAGAATGGGTGTTATGATTGTTGGTTTATGTGGTAACAATGGTACAACAGTAGTTGGT
GGTGTTATTGCCAATCGTGAAGGTTTATGTTGGAATACCAAACAAGGTCTTCAAACACCA
AACTATTTTGGTTCAGTTGTTATGTCCTCAACCATTAGAATGGGTATGGATGAAAATGGT
TGTGATGCCTACATTCCATTAAAGAACTTAATCCCAATGGTTCATCCAAACGATATTGTT
TTCGGTGGTTGGGATATCAACAATGCCAACTTAGCTGATGCCATGCAACGTGCTCAAGTT
TTTGACTATGATTTACAAGTTCAATTGATTCCACACATGAAAAACATCACTCCACTCCCA
TCCATCTATTTCCCAGACTTTATCGCTGCAAATCAAAAGGATCGTGCCAACAATGTTTTA
ACTGGTACCAAAAAGGAACAAATGGAACAAATTAGAAAAGATATTAGAGATTTCAAAGAA
TCAAACAAACTCGACACCGTCGTCGTTATGTGGTCCGCAAACACTGAACGTTTCTCTTCA
CTCGTTCCAGGTGTCAATGATACCATCGAAA----------
Length of 5' end seq. 631
3' end seq. ID FC-AA11Z
3' end seq.
>FC-AA11Z.Seq
----------GTGAACACCCAGATCACGTTATTGTCATCAAATACGTCCCATACGTAGGT
GATTCAAAGAGAGCTATGGATGAATATACCTCACAAATCTTTATGGGTGGTCACAATACA
ATCGTTCTCCACAACACTTGTGAAGATTCTTTATTAGCCGCTCCAATTATTTTAGATTTA
GTTATTCTTGCTGAAGTTACTAGTCGTATCACAATGAAAAAACAAGATGATGATCAATTT
GCTACTTTCCATCCAGTTTTATCATTATTATCATACCTCCTTAAAGCACCAATTGTTCCA
AAACATGCTACCGTTGTAAATGCACTCTTCAAACAAAGAGCCTGCATAGAAAATATCTTC
AAAGCATGCGTTGGTATCGCTCCAGATAATAACATGTTATTAGAACAAAGATTATAAATA
ATACAAACAATTTCAATAATAATAACATTTATTTAAAAAATAACTTCCATTTATAATAAA
ATAATCTTTTGTAAAATTTAATAACTCTAAAA
Length of 3' end seq. 502
Connected seq. ID FC-AA11P
Connected seq.
>FC-AA11P.Seq
GGTGAATTAATTGTTGAACCAGTTGATCAAAAATATATTTTCAAGACTGAACGTAAAGTT
CCAAGAATGGGTGTTATGATTGTTGGTTTATGTGGTAACAATGGTACAACAGTAGTTGGT
GGTGTTATTGCCAATCGTGAAGGTTTATGTTGGAATACCAAACAAGGTCTTCAAACACCA
AACTATTTTGGTTCAGTTGTTATGTCCTCAACCATTAGAATGGGTATGGATGAAAATGGT
TGTGATGCCTACATTCCATTAAAGAACTTAATCCCAATGGTTCATCCAAACGATATTGTT
TTCGGTGGTTGGGATATCAACAATGCCAACTTAGCTGATGCCATGCAACGTGCTCAAGTT
TTTGACTATGATTTACAAGTTCAATTGATTCCACACATGAAAAACATCACTCCACTCCCA
TCCATCTATTTCCCAGACTTTATCGCTGCAAATCAAAAGGATCGTGCCAACAATGTTTTA
ACTGGTACCAAAAAGGAACAAATGGAACAAATTAGAAAAGATATTAGAGATTTCAAAGAA
TCAAACAAACTCGACACCGTCGTCGTTATGTGGTCCGCAAACACTGAACGTTTCTCTTCA
CTCGTTCCAGGTGTCAATGATACCATCGAAA----------GTGAACACCCAGATCACGT
TATTGTCATCAAATACGTCCCATACGTAGGTGATTCAAAGAGAGCTATGGATGAATATAC
CTCACAAATCTTTATGGGTGGTCACAATACAATCGTTCTCCACAACACTTGTGAAGATTC
TTTATTAGCCGCTCCAATTATTTTAGATTTAGTTATTCTTGCTGAAGTTACTAGTCGTAT
CACAATGAAAAAACAAGATGATGATCAATTTGCTACTTTCCATCCAGTTTTATCATTATT
ATCATACCTCCTTAAAGCACCAATTGTTCCAAAACATGCTACCGTTGTAAATGCACTCTT
CAAACAAAGAGCCTGCATAGAAAATATCTTCAAAGCATGCGTTGGTATCGCTCCAGATAA
TAACATGTTATTAGAACAAAGATTATAAATAATACAAACAATTTCAATAATAATAACATT
TATTTAAAAAATAACTTCCATTTATAATAAAATAATCTTTTGTAAAATTTAATAACTCTA
AAA
Length of connected seq. 1133
Full length Seq ID -
Full length Seq. -
Length of full length seq. -