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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AA10
Library FC
(Link to library)
Clone ID FC-AA10
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID FC-AA10P
(Link to Original site)
Representative DNA sequence 
>FC-AA10 (FC-AA10Q) /CSM/FC/FC-AA/FC-AA10Q.Seq.d/
AAATGACTACCTTTAACGAATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATA
ATGATGGAGTCTTCAATGGAAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATC
CAACAAATAATAAAGTTATTGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACAT
GTATTCAAGCAATGTTAGCAGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAG
GTGAAATTGTTAGATTAATTGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAAT
TAATTTCATTAGAAATGGGTAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCA
TTGACGTATGCGATTATGCAACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCAT
CTGAACGTCCAAATCACATTTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCA
TTACTGCTTTCAATTTCCCATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTT
GCGGTAACGTCCAATTATGGAAAGGTGCCTCCACCACTTCACTCATTACATTAGCCGTTA
GCAAAATCATTGAAAAGGTTTTAGTTGAAAATGATGTCGACCCAGCCGTCTGTTGTGTCX
XXXXXXXXXAAAAGCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGATATCAGTG
GTGGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGATGCTCCAATCGTAAAGA
CTGAACTCTTTGTTCCAATTCTCTACATAATGAAATTCAAAAATCTTGACGATGCTTTTG
CCTGGAATAATGAAGTCCCACAAGGTCTCTCATCTTCCCTCTTCACAAACAATCAAAAGA
ATATCTTCAAATGGCTTGGACCTACCGGATCTGACTGTGGTATAGTTAACGTAAATGTAG
CTACAAACGGTGCTGAAATTGGTGGTGCCTTTGGAGGTGAAAAAGAGACCGGAGGTGGTA
GAGAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGTCGTAGTACTAATACAATCAACT
ATGGTAATACTATGCCATTATCACAAGGTATCAATTTTAACTAAAATTACCAAAAAAAAA
AAACCAAATGTAACTTACATAACATAAATAAAAGCAATATTGTTGATATTTGTTCCATAA
TTAAAAAAAAAAA
sequence update 1996.12.12
Translated Amino Acid sequence 
MTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIATVRGAAPEEYETC
IQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKIYIEAKGEVQEFI
DVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPCAVLGWNAAISMIC
GNVQLWKGASTTSLITLAVSKIIEKVLVENDVDPAVCCV---

---KQGGKVVIGGNKLDISGGNFVEPTVVAIEHDAPIVKTELFVPILYIMKFKNLDDAFA
WNNEVPQGLSSSLFTNNQKNIFKWLGPTGSDCGIVNVNVATNGAEIGGAFGGEKETGGGR
ESGSDSWKQYCRRSTNTINYGNTMPLSQGINFN*nyqkkktkcnlhninksnivdicsii
kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
k*lpltnihswln*alklkimmessmengevlvkssnv*iqqiikllqllevlhqknmkh
vfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh*kwvkftlklkvkykns
ltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvslllsishvpylvgmlqsq*f
avtsnygkvppplhslh*plakslkrf*lkmmstqpsvv---

---kskvvrsslvvinsisvvetllnqpslplnmmlqs*rlnslfqfst**nskiltmll
pgimkshkvshlpssqtikrissngldlpdltvv*lt*m*lqtvlklvvplevkkrpevv
enlaqtagnsiavvvliqstmvilchyhkvsiltkitkkkkpnvtyit*ikaillifvp*
lkkk

Frame B:
ndyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk**sycnc*rcctrri*nm
yssnvsskskmgintsskkr*nc*inwssherkn*tiikinfirng*nlh*s*r*strih
*rmrlcnwfk*inqwssdai*tskshfngnlesirfswyhycfqfpmcrtwleccnlndl
r*rpimerclhhfthyisr*qnh*kgfs*k*crpsrllc---

---karw*grhww**tryqwwklc*tnrrch*t*csnrkd*tlcsnslhneiqks*rcfc
le**sptrslifplhkqskeylqmawtyri*lwys*rkcsykrc*nwwclwr*krdrrw*
riwlrqletvlps*y*ynqlw*yyaiitryqf*lklpkkknqm*lt*hk*kqyc*ylfhn
*kkk

Frame C:
MTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIATVRGAAPEEYETC
IQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKIYIEAKGEVQEFI
DVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPCAVLGWNAAISMIC
GNVQLWKGASTTSLITLAVSKIIEKVLVENDVDPAVCCV---

---KQGGKVVIGGNKLDISGGNFVEPTVVAIEHDAPIVKTELFVPILYIMKFKNLDDAFA
WNNEVPQGLSSSLFTNNQKNIFKWLGPTGSDCGIVNVNVATNGAEIGGAFGGEKETGGGR
ESGSDSWKQYCRRSTNTINYGNTMPLSQGINFN*nyqkkktkcnlhninksnivdicsii
kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AA10 (FC-AA10Q) /CSM/FC/FC-AA/FC-AA10Q.Seq.d/                     2252   0.0
VFB844 (VFB844Q) /CSM/VF/VFB8-B/VFB844Q.Seq.d/                       1300   0.0
SLC178 (SLC178Q) /CSM/SL/SLC1-D/SLC178Q.Seq.d/                       1298   0.0
SLE339 (SLE339Q) /CSM/SL/SLE3-B/SLE339Q.Seq.d/                       1273   0.0
CFD614 (CFD614Q) /CSM/CF/CFD6-A/CFD614Q.Seq.d/                       1271   0.0
AFO402 (AFO402Q) /CSM/AF/AFO4-A/AFO402Q.Seq.d/                       1259   0.0
VFD815 (VFD815Q) /CSM/VF/VFD8-A/VFD815Q.Seq.d/                       1221   0.0
AFH527 (AFH527Q) /CSM/AF/AFH5-B/AFH527Q.Seq.d/                       1221   0.0
CFH684 (CFH684Q) /CSM/CF/CFH6-D/CFH684Q.Seq.d/                       1183   0.0
CFD640 (CFD640Q) /CSM/CF/CFD6-B/CFD640Q.Seq.d/                       1181   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   999  0.0  5
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds.    72  2e-17  2
AY034889|AY034889.1 Tortula ruralis aldehyde dehydrogenase ALDH2 (RNP129b) mRNA, complete cds.    46  1e-11  4
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence.    74  1e-11  3
BU111535|BU111535.1 603126401F1 CSEQCHL13 Gallus gallus cDNA clone ChEST96a2 5', mRNA sequence.    42  5e-10  4
CB209980|CB209980.1 OML00260 Oryza minuta HybriZAP-2.1 XR library Oryza minuta cDNA 5', mRNA sequence.    68  8e-10  2
BU488446|BU488446.1 604125245F1 CSEQRBN36 Gallus gallus cDNA clone ChEST943i12 5', mRNA sequence.    42  8e-10  4
BU319046|BU319046.1 603486759F1 CSEQCHN62 Gallus gallus cDNA clone ChEST382f16 5', mRNA sequence.    42  8e-10  4
BU406760|BU406760.1 604140323F1 CSEQCHN59 Gallus gallus cDNA clone ChEST972m5 5', mRNA sequence.    42  9e-10  4
BU106121|BU106121.1 603006693F1 CSEQCHL01 Gallus gallus cDNA clone ChEST25i24 5', mRNA sequence.    42  9e-10  4
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ...   444   e-123
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase...   267   6e-70
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326...   263   7e-69
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen...   261   3e-68
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ...   260   6e-68
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet...   260   7e-68
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti...   258   4e-67
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas...   255   2e-66
AK160117_1(AK160117|pid:none) Mus musculus osteoclast-like cell ...   254   3e-66
(Q9DBF1) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen...   254   3e-66
protein update 2009. 4.13
PSORT 

 psg: 0.75  gvh: 0.31  alm: 0.29  top: 0.70  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for FC-AA10 is nuc
5' end seq. ID FC-AA10F
5' end seq. 
>FC-AA10F.Seq
AAATGACTACCTTTAACGAATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATA
ATGATGGAGTCTTCAATGGAAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATC
CAACAAATAATAAAGTTATTGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACAT
GTATTCAAGCAATGTTAGCAGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAG
GTGAAATTGTTAGATTAATTGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAAT
TAATTTCATTAGAAATGGGTAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCA
TTGACGTATGCGATTATGCAACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCAT
CTGAACGTCCAAATCACATTTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCA
TTACTGCTTTCAATTTCCCATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTT
GCGGTAACGTCCAATTATGGAAAGGTGCCTCCACCACTTCACTCATTACATTAGCCGTTA
GCAAAATCATTGAAAAGGTTTTAGTTGAAAATGATGTCGACCCAGCCGTCTGTTGTGTC-
---------
Length of 5' end seq. 659
3' end seq. ID FC-AA10Z
3' end seq. 
>FC-AA10Z.Seq
----------AAAAGCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGATATCAGT
GGTGGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGATGCTCCAATCGTAAAG
ACTGAACTCTTTGTTCCAATTCTCTACATAATGAAATTCAAAAATCTTGACGATGCTTTT
GCCTGGAATAATGAAGTCCCACAAGGTCTCTCATCTTCCCTCTTCACAAACAATCAAAAG
AATATCTTCAAATGGCTTGGACCTACCGGATCTGACTGTGGTATAGTTAACGTAAATGTA
GCTACAAACGGTGCTGAAATTGGTGGTGCCTTTGGAGGTGAAAAAGAGACCGGAGGTGGT
AGAGAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGTCGTAGTACTAATACAATCAAC
TATGGTAATACTATGCCATTATCACAAGGTATCAATTTTAACTAAAATTACCAAAAAAAA
AAAACCAAATGTAACTTACATAACATAAATAAAAGCAATATTGTTGATATTTGTTCCATA
ATTAAAAAAAAAAA
Length of 3' end seq. 544
Connected seq. ID FC-AA10P
Connected seq. 
>FC-AA10P.Seq
AAATGACTACCTTTAACGAATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATA
ATGATGGAGTCTTCAATGGAAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATC
CAACAAATAATAAAGTTATTGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACAT
GTATTCAAGCAATGTTAGCAGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAG
GTGAAATTGTTAGATTAATTGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAAT
TAATTTCATTAGAAATGGGTAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCA
TTGACGTATGCGATTATGCAACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCAT
CTGAACGTCCAAATCACATTTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCA
TTACTGCTTTCAATTTCCCATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTT
GCGGTAACGTCCAATTATGGAAAGGTGCCTCCACCACTTCACTCATTACATTAGCCGTTA
GCAAAATCATTGAAAAGGTTTTAGTTGAAAATGATGTCGACCCAGCCGTCTGTTGTGTC-
---------AAAAGCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGATATCAGTG
GTGGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGATGCTCCAATCGTAAAGA
CTGAACTCTTTGTTCCAATTCTCTACATAATGAAATTCAAAAATCTTGACGATGCTTTTG
CCTGGAATAATGAAGTCCCACAAGGTCTCTCATCTTCCCTCTTCACAAACAATCAAAAGA
ATATCTTCAAATGGCTTGGACCTACCGGATCTGACTGTGGTATAGTTAACGTAAATGTAG
CTACAAACGGTGCTGAAATTGGTGGTGCCTTTGGAGGTGAAAAAGAGACCGGAGGTGGTA
GAGAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGTCGTAGTACTAATACAATCAACT
ATGGTAATACTATGCCATTATCACAAGGTATCAATTTTAACTAAAATTACCAAAAAAAAA
AAACCAAATGTAACTTACATAACATAAATAAAAGCAATATTGTTGATATTTGTTCCATAA
TTAAAAAAAAAAA
Length of connected seq. 1203
Full length Seq ID -
Full length Seq. -
Length of full length seq. -