>FC-AA09 (FC-AA09Q) /CSM/FC/FC-AA/FC-AA09Q.Seq.d/
GATACATTATCACCATGGCAGGAAAAAAAGTCAAATCTAACACACCAAAACAAGACTTAT
CTGTCTCTAAATCAAAGCTCACCAGCATTAAAGCCCCAGCTGCTGCCATCAAAGCTAAAG
CTGCCGCTTCTGCTGTCAAAAAGGGTGTCTCAAACAAATCTACCCGTAAGGTCAGAACCT
CTGTCATCTTCAGACGTCCAGTTACTTTAAACAACCCAAAGAAACCAGCTTACCCAAGAA
GATCAGTCAACAAAATCACCAAAATGGATCAATTCAGAATCTTAAAAGCACCATTAACCA
CTGAATCTGCCACCCAAAAAATCGAAGGTAGCAACACCATCACTTTTATGGTTGATATGT
TTGCCAACAAATCACAAGTTGCTGATGCCGTCGCTAAAATGTATGATGTCAAAGTCAAGA
GAGTTAACACTTTAATTACCCCACGTGGTGAAAAGAAAGCTTTTGTCACTTTATCACCAG
AATTCGAAGCTGCTGATGTTGCCAACAAAATCGGTTTAATCTAAACAATTCTCCCTTATA
TAATAAAAAAAAGCTTTTCAAA

YIITMAGKKVKSNTPKQDLSVSKSKLTSIKAPAAAIKAKAAASAVKKGVSNKSTRKVRTS
VIFRRPVTLNNPKKPAYPRRSVNKITKMDQFRILKAPLTTESATQKIEGSNTITFMVDMF
ANKSQVADAVAKMYDVKVKRVNTLITPRGEKKAFVTLSPEFEAADVANKIGLI*tilpyi
ikksfs

Frame A:
dtlspwqekksnlthqnktylslnqsspalkpqllpsklklplllskrvsqtnlpvrsep
lsssdvqll*ttqrnqltqedqstkspkwinses*khh*plnlppkkskvatpsllwlic
lptnhkllmpslkcmmsksreltl*lphvvkrkllslyhqnskllmlptksv*skqfsli
**kkafq


Frame B:
ihyhhgrkksqi*htktrlicl*ikahqh*spscchqs*scrfccqkgclkqiyp*gqnl
chlqtssyfkqpketslpkkisqqnhqngsiqnlkstinh*ichpknrr*qhhhfyg*yv
cqqitsc*crr*nv*cqsqes*hfnyptw*kesfchfitrirsc*ccqqnrfnlnnsply
nkkklfk


Frame C:
YIITMAGKKVKSNTPKQDLSVSKSKLTSIKAPAAAIKAKAAASAVKKGVSNKSTRKVRTS
VIFRRPVTLNNPKKPAYPRRSVNKITKMDQFRILKAPLTTESATQKIEGSNTITFMVDMF
ANKSQVADAVAKMYDVKVKRVNTLITPRGEKKAFVTLSPEFEAADVANKIGLI*tilpyi
ikksfs

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO429 (VFO429Q) /CSM/VF/VFO4-B/VFO429Q.Seq.d/                       1037   0.0
SLC129 (SLC129Q) /CSM/SL/SLC1-B/SLC129Q.Seq.d/                       1037   0.0
FC-AA09 (FC-AA09Q) /CSM/FC/FC-AA/FC-AA09Q.Seq.d/                     1037   0.0
VSK279 (VSK279Q) /CSM/VS/VSK2-D/VSK279Q.Seq.d/                       1029   0.0
VSK148 (VSK148Q) /CSM/VS/VSK1-B/VSK148Q.Seq.d/                       1027   0.0
FC-008 (FC-008Q) /CSM/CG/CG-FC/FC-008Q.Seq.d/                        1023   0.0
VSJ233 (VSJ233Q) /CSM/VS/VSJ2-B/VSJ233Q.Seq.d/                       1021   0.0
VSG152 (VSG152Q) /CSM/VS/VSG1-C/VSG152Q.Seq.d/                       1021   0.0
VSF311 (VSF311Q) /CSM/VS/VSF3-A/VSF311Q.Seq.d/                       1021   0.0
VSD796 (VSD796Q) /CSM/VS/VSD7-D/VSD796Q.Seq.d/                       1021   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ516444|AJ516444.1 Mytilus galloprovincialis EST, clone GPPD00413.    34   0.003  3
AJ516805|AJ516805.1 Mytilus galloprovincialis EST, clone GPPD00843.    34   0.003  3
BP190759|BP190759.1 Dugesia japonica cDNA, clone: 05686_HH, expressed in the head.    40   0.16   2
AL591436|AL591436.8 Mouse DNA sequence from clone RP23-434F13 on chromosome 11.    46   0.53   1
AC130825|AC130825.2 Mus musculus chromosome UNK clone RP23-390C6, WORKING DRAFT SEQUENCE, 10 unordered pieces.    34   1.5    7
AC021857|AC021857.4 Homo sapiens chromosome RPCI-11 clone RP11-563B11, WORKING DRAFT SEQUENCE, 12 unordered pieces.    44   2.1    1
AJ007421|AJ007421.2 Homo sapiens SALL3 gene, exons 1a, 2 and 3.    44   2.1    1
AP001852|AP001852.2 Homo sapiens genomic DNA, chromosome 18q23 clone:RP11-849I19, WORKING DRAFT SEQUENCE, 42 unordered pieces.    44   2.1    1
AC099689|AC099689.4 Homo sapiens chromosome 18, clone RP11-849I19, complete sequence.    44   2.1    1
AF347021|AF347021.1 Homo sapiens C2H2 zinc finger protein (SALL3) gene, complete cds.    44   2.1    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54BQ3) RecName: Full=60S ribosomal protein L23a;                    284   1e-75
EU302546_1(EU302546|pid:none) Lineus viridis ribosomal protein r...   153   3e-36
EU976714_1(EU976714|pid:none) Zea mays clone 988301 60S ribosoma...   147   2e-34
AL442115_17(AL442115|pid:none) Oryza sativa genomic DNA, chromos...   146   4e-34
AL606594_21(AL606594|pid:none) Oryza sativa genomic DNA, chromos...   146   4e-34
EF677891_1(EF677891|pid:none) Picea sitchensis clone WS0277_J13 ...   145   5e-34
EF084630_1(EF084630|pid:none) Picea sitchensis clone WS02719_C08...   145   5e-34
EF084011_1(EF084011|pid:none) Picea sitchensis clone WS0272_A23 ...   145   7e-34
AE017343_34(AE017343|pid:none) Cryptococcus neoformans var. neof...   144   1e-33
BT087917_1(BT087917|pid:none) Zea mays full-length cDNA clone ZM...   144   1e-33

 psg: 0.52  gvh: 0.36  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.14
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for FC-AA09 is cyt

>FC-AA09E.Seq
GATACATTATCACCATGGCAGGAAAAAAAGTCAAATCTAACACACCAAAACAAGACTTAT
CTGTCTCTAAATCAAAGCTCACCAGCATTAAAGCCCCAGCTGCTGCCATCAAAGCTAAAG
CTGCCGCTTCTGCTGTCAAAAAGGGTGTCTCAAACAAATCTACCCGTAAGGTCAGAACCT
CTGTCATCTTCAGACGTCCAGTTACTTTAAACAACCCAAAGAAACCAGCTTACCCAAGAA
GATCAGTCAACAAAATCACCAAAATGGATCAATTCAGAATCTTAAAAGCACCATTAACCA
CTGAATCTGCCACCCAAAAAATCGAAGGTAGCAACACCATCACTTTTATGGTTGATATGT
TTGCCAACAAATCACAAGTTGCTGATGCCGTCGCTAAAATGTATGATGTCAAAGTCAAGA
GAGTTAACACTTTAATTACCCCACGTGGTGAAAAGAAAGCTTTTGTCACTTTATCACCAG
AATTCGAAGCTGCTGATGTTGCCAACAAAATCGGTTTAATCTAAACAATTCTCCCTTATA
TAATAAAAAAAAGCTTTTCAAA