FC-AA05
Library FC
(Link to library)
Clone ID FC-AA05
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15085-1
Original site URL
Representative seq. ID FC-AA05E
(Link to Original site)
Representative DNA sequence
>FC-AA05 (FC-AA05Q) /CSM/FC/FC-AA/FC-AA05Q.Seq.d/
AAACAAAAAAAAAAGGTATGGAAATTTTTGCATTTGTACCATTAGCAGTGTTAACAGCAT
TATGTGTTGTTATTTCACTCTTTGTTAAAAGAGAGAAATTAGTAGTTTTCTGGTTATTAT
GGTCAGGTTTAATTCACATTATCTTGGAAGGTTCATATGGTTTCTTTGCACATGAAGTCA
CCAAAGCATCAACTGTTTCATTCACAGAGAAAATGTTAGAATTAGTTCCATTAGAGAATG
CATGGAATCCACATTGGTACGCTCAATTATATTCACAATATGCTAAATACGATTTACGTT
ACGCTATTCAAGATCCAATGGTAGTTTTCTTTTGTTTCTTGGAATTGGTTCAAGGTGCAG
CATGTTTCCTTTTAGTTATCTGTGTTATTAAACAAGCAAGAATTCGTCACGCTCTTCAAA
TCTTTTTATGCTCCATTCAAGGTTTAGGTACAGTTTTCTACTTTATCACTCCATACATCT
ATGGTCTTTGGGAACAACAAATCTCCTCTGATCCATTTGAACTCTGGGTTTACGTCGTTG
GTCTCAATGGTCTTTGGTTATTAGTTCCAATCATTTTAACCATTCAATCTTTCATTGCAA
TTAATAAACAATTCTCAATTGTTGAATCAACTACTAAAGATGCTAAATTCATTTCAAGAA
AACCAAAAACTGCTT
sequence update 1996.12.12
Translated Amino Acid sequence
TKKKGMEIFAFVPLAVLTALCVVISLFVKREKLVVFWLLWSGLIHIILEGSYGFFAHEVT
KASTVSFTEKMLELVPLENAWNPHWYAQLYSQYAKYDLRYAIQDPMVVFFCFLELVQGAA
CFLLVICVIKQARIRHALQIFLCSIQGLGTVFYFITPYIYGLWEQQISSDPFELWVYVVG
LNGLWLLVPIILTIQSFIAINKQFSIVESTTKDAKFISRKPKTA


Translated Amino Acid sequence (All Frames)
Frame A:
kqkkkvwkflhlyh*qc*qhyvllfhsllkern**fsgyygqv*ftlswkvhmvslhmks
pkhqlfhsqrkc*n*fh*rmhgihigtlnyihnmlntiyvtlfkiqw*fsfvswnwfkvq
hvsf*lsvllnkqefvtlfksfyapfkv*vqfstlslhtsmvfgnnksplihlnsgftsl
vsmvfgy*fqsf*pfnlslqlinnsqllnqllkmlnsfqenqkll


Frame B:
nkkkrygnfcictissvnsimccyftlc*kreissflvimvrfnshylgrfiwflct*sh
qsincfihrenvrissirecmestlvrsiiftic*irftlrysrsngsfllflgigsrcs
mfpfsylcy*tsknssrssnlfmlhsrfrysfllyhsihlwslgttnll*si*tlglrrw
sqwslvissnhfnhsifhcn**tilnc*iny*rc*ihfkktknc


Frame C:
TKKKGMEIFAFVPLAVLTALCVVISLFVKREKLVVFWLLWSGLIHIILEGSYGFFAHEVT
KASTVSFTEKMLELVPLENAWNPHWYAQLYSQYAKYDLRYAIQDPMVVFFCFLELVQGAA
CFLLVICVIKQARIRHALQIFLCSIQGLGTVFYFITPYIYGLWEQQISSDPFELWVYVVG
LNGLWLLVPIILTIQSFIAINKQFSIVESTTKDAKFISRKPKTA


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AA05 (FC-AA05Q) /CSM/FC/FC-AA/FC-AA05Q.Seq.d/ 1310 0.0
SSB703 (SSB703Q) /CSM/SS/SSB7-A/SSB703Q.Seq.d/ 1259 0.0
SSE826 (SSE826Q) /CSM/SS/SSE8-B/SSE826Q.Seq.d/ 690 0.0
FC-IC0939 (FC-IC0939Q) /CSM/FC-IC/FC-IC0939Q.Seq.d/ 448 e-125
VHE410 (VHE410Q) /CSM/VH/VHE4-A/VHE410Q.Seq.d/ 38 0.17
VFB807 (VFB807Q) /CSM/VF/VFB8-A/VFB807Q.Seq.d/ 38 0.17
CHJ189 (CHJ189Q) /CSM/CH/CHJ1-D/CHJ189Q.Seq.d/ 38 0.17
AHG796 (AHG796Q) /CSM/AH/AHG7-D/AHG796Q.Seq.d/ 38 0.17
VSI227 (VSI227Q) /CSM/VS/VSI2-B/VSI227Q.Seq.d/ 36 0.67
VSH228 (VSH228Q) /CSM/VS/VSH2-B/VSH228Q.Seq.d/ 36 0.67

own update 2004. 8. 6
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC078909|AC078909.7 Homo sapiens chromosome 15, clone RP11-128A17, complete sequence. 40 0.16 7
AC127535|AC127535.1 Homo sapiens chromosome 11 clone RP1-292D23 map 11, LOW-PASS SEQUENCE SAMPLING. 36 0.33 4
BH731363|BH731363.1 BOMFD03TF BO_2_3_KB Brassica oleracea genomic clone BOMFD03, genomic survey sequence. 46 0.64 1
AC016403|AC016403.2 Homo sapiens clone RP11-44C2, LOW-PASS SEQUENCE SAMPLING. 34 0.80 5
AP000207|AP000207.1 Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone f43D11-119B8, segment 5/12. 38 0.87 4
AC026941|AC026941.2 Homo sapiens chromosome 1 clone RP11-212B4 map 1, WORKING DRAFT SEQUENCE, 8 unordered pieces. 32 0.94 8
AL445217|AL445217.3 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP11-335G18. 32 1.1 7
AC147565|AC147565.2 Mus musculus chromosome UNK clone RP23-116P18, WORKING DRAFT SEQUENCE, 13 unordered pieces. 34 1.5 11
AL928864|AL928864.11 Zebrafish DNA sequence from clone CH211-10P21. 34 1.5 6
AC027653|AC027653.3 Mus musculus chromosome 5 clone RP23-166J14 strain C57BL6/J, complete sequence. 30 1.6 7
dna update 2004. 2. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY533175_1(AY533175|pid:none) Zea mays sterol-8,7-isomerase mRNA... 90 5e-17
AK019140_1(AK019140|pid:none) Mus musculus 13 days embryo liver ... 82 1e-14
(Q9D0P0) RecName: Full=Emopamil-binding protein-like; AltName: F... 82 1e-14
BC078134_1(BC078134|pid:none) Xenopus laevis emopamil binding pr... 79 2e-13
AP007151_1039(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 78 2e-13
AM269987_10(AM269987|pid:none) Aspergillus niger contig An01c040... 77 4e-13
BC103111_1(BC103111|pid:none) Bos taurus emopamil binding protei... 70 4e-11
EF173624_1(EF173624|pid:none) Gibberella zeae EBDP1 gene, comple... 69 1e-10
EF087245_1(EF087245|pid:none) Picea sitchensis clone WS02734_L21... 69 1e-10
BC168640_1(BC168640|pid:none) Xenopus tropicalis cDNA clone MGC:... 69 1e-10
protein update 2009. 7. 2
PSORT

psg: 0.96 gvh: 0.64 alm: 0.16 top: 0.47 tms: 0.33 mit: 0.29 mip: 0.06
nuc: 0.03 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

44.0 %: endoplasmic reticulum
20.0 %: mitochondrial
20.0 %: plasma membrane
4.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vacuolar

>> prediction for FC-AA05 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AA05E
Full length Seq.
>FC-AA05E.Seq
AAACAAAAAAAAAAGGTATGGAAATTTTTGCATTTGTACCATTAGCAGTGTTAACAGCAT
TATGTGTTGTTATTTCACTCTTTGTTAAAAGAGAGAAATTAGTAGTTTTCTGGTTATTAT
GGTCAGGTTTAATTCACATTATCTTGGAAGGTTCATATGGTTTCTTTGCACATGAAGTCA
CCAAAGCATCAACTGTTTCATTCACAGAGAAAATGTTAGAATTAGTTCCATTAGAGAATG
CATGGAATCCACATTGGTACGCTCAATTATATTCACAATATGCTAAATACGATTTACGTT
ACGCTATTCAAGATCCAATGGTAGTTTTCTTTTGTTTCTTGGAATTGGTTCAAGGTGCAG
CATGTTTCCTTTTAGTTATCTGTGTTATTAAACAAGCAAGAATTCGTCACGCTCTTCAAA
TCTTTTTATGCTCCATTCAAGGTTTAGGTACAGTTTTCTACTTTATCACTCCATACATCT
ATGGTCTTTGGGAACAACAAATCTCCTCTGATCCATTTGAACTCTGGGTTTACGTCGTTG
GTCTCAATGGTCTTTGGTTATTAGTTCCAATCATTTTAACCATTCAATCTTTCATTGCAA
TTAATAAACAATTCTCAATTGTTGAATCAACTACTAAAGATGCTAAATTCATTTCAAGAA
AACCAAAAACTGCTT
Length of full length seq. 675