FC-AA04
Library FC
(Link to library)
Clone ID FC-AA04
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15354-1
Original site URL
Representative seq. ID FC-AA04P
(Link to Original site)
Representative DNA sequence
>FC-AA04 (FC-AA04Q) /CSM/FC/FC-AA/FC-AA04Q.Seq.d/
AATAATACACATAAAAAATTTATTAAATAAAAATGACTACAACAACAACAAATGAAGTTT
ATATAGTTGATTGTATTCGTACACCAATTGGTAGAGGATATAGTAATGGATCATTACATT
CAATACAACCAATTGATTTATTATCATATACACTGGACCAATTAATGAAAAGAAATCCAA
ATGTTGATAGAGGATTAGTTGAAGATGTTATTTGTGGTGTTGTATCACCATTAAGAGAAC
AAGGTGCAAACATAGCAAGATTTGCAGCATTAAAAGCCGGATTACCAATCAATGTGCCAG
GTGTTCAATTAAATAGAATGTGTGGATCAGGTCAACAAGCTATCCATTTTGGCTCGCAAG
CAATTAGATCAGGTGATATGGATATTGTTATTGGCTGTGGTGTAGAAATGATGAGTATAG
TACCAATGGGCAGTGATTGGCAATTAGATAATCCTAAATTTGTAGAAGGTTTTAATTTCA
AAGTACTTCATCAAGGTGTTTCCTCTGAAATGATTGCAGAGAAATATAATTTAACAAGAG
ATGAAAXXXXXXXXXXACCACGTGCTCGTATTGTAACTTGTACAGTAGTTGGCTCTGATC
CAGAATATATGCTATTAGGTCCAATTCCAGCAACTATTAAAGCATTGGAAAAGAGTGGTC
TCACTAAAGATCAAATTGATCTATATGAAATTAATGAAGCCTTTGCATCTGTAGTTTTAG
GTTGGAAAAAGGAATTAAATATTGATTTAGATAAAATTAATCCAAATGGTGGTGCAATCG
CACATGGTCATCCATTAGGTGCAACTGGTTGTATTCTTATGACTAAAATGGTAAATGAAT
TAGAAAGATCAAATAAAAAATACGCACTTCAAACAATGTGTATTGGTTTTGGTCAAGCAA
CTGCAACAATTATTGAAAATTGTTCATATAAACCAATTTCAAAATTATAAAAAAATAATA
AAAAACTTTTATTAATTTAATTTATTAATTTAATTTATTAATTTAATTTATTTATTTATT
AATTTAAAAAAAAAAAAAAA
sequence update 1996.12.12
Translated Amino Acid sequence
*yt*kiy*IKMTTTTTNEVYIVDCIRTPIGRGYSNGSLHSIQPIDLLSYTLDQLMKRNPN
VDRGLVEDVICGVVSPLREQGANIARFAALKAGLPINVPGVQLNRMCGSGQQAIHFGSQA
IRSGDMDIVIGCGVEMMSIVPMGSDWQLDNPKFVEGFNFKVLHQGVSSEMIAEKYNLTRD
E---

---PRARIVTCTVVGSDPEYMLLGPIPATIKALEKSGLTKDQIDLYEINEAFASVVLGWK
KELNIDLDKINPNGGAIAHGHPLGATGCILMTKMVNELERSNKKYALQTMCIGFGQATAT
IIENCSYKPISKL*knnkkllli*finliy*fnlfiy*fkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
nnthkkfik*k*lqqqqmkfi*livfvhqlvedivmdhyiqynqliyyhihwtn**keiq
mlied*lkmlfvvlyhh*enkvqt*qdlqh*kpdyqsmcqvfn*iecvdqvnklsilark
qldqviwilllavv*k**v*yqwavign*iilnl*kvliskyfikvfplk*lqrnii*qe
mk---

---ttcsycnlysswl*sriyairsnssny*sigkewsh*rsn*si*n**slcicsfrle
kgiky*fr*n*skwwcnrtwssircnwlysyd*ngk*irkik*kirtsnnvywfwssncn
ny*klfi*tnfkiikk**ktfinliy*fnlli*fiylli*kkkk

Frame B:
iihiknllnkndynnnk*slys*lysytnw*ri**wiitfnttn*fiiiytgpinekksk
c**ris*rcylwccitikrtrckhskicsiksritnqcarcsik*nvwirstsypfwlas
n*ir*ygycywlwcrndeystngq*lair*s*icrrf*fqstssrcfl*ndcrei*fnkr
*---

---PRARIVTCTVVGSDPEYMLLGPIPATIKALEKSGLTKDQIDLYEINEAFASVVLGWK
KELNIDLDKINPNGGAIAHGHPLGATGCILMTKMVNELERSNKKYALQTMCIGFGQATAT
IIENCSYKPISKL*knnkkllli*finliy*fnlfiy*fkkkkk

Frame C:
*yt*kiy*IKMTTTTTNEVYIVDCIRTPIGRGYSNGSLHSIQPIDLLSYTLDQLMKRNPN
VDRGLVEDVICGVVSPLREQGANIARFAALKAGLPINVPGVQLNRMCGSGQQAIHFGSQA
IRSGDMDIVIGCGVEMMSIVPMGSDWQLDNPKFVEGFNFKVLHQGVSSEMIAEKYNLTRD
E---

---hvlvl*lvq*laliqnicy*vqfqqllkhwkrvvslkikliymklmkplhl*f*vgk
rn*ili*ikliqmvvqshmvih*vqlvvfl*lkw*mn*kdqiknthfkqcvlvlvkqlqq
llkivhinqfqnykkiiknfy*fnlli*finliylfinlkkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AA04 (FC-AA04Q) /CSM/FC/FC-AA/FC-AA04Q.Seq.d/ 1804 0.0
CFE259 (CFE259Q) /CSM/CF/CFE2-C/CFE259Q.Seq.d/ 1082 0.0
VFN804 (VFN804Q) /CSM/VF/VFN8-A/VFN804Q.Seq.d/ 1076 0.0
CFA532 (CFA532Q) /CSM/CF/CFA5-B/CFA532Q.Seq.d/ 1066 0.0
SFD167 (SFD167Q) /CSM/SF/SFD1-C/SFD167Q.Seq.d/ 1029 0.0
VFO257 (VFO257Q) /CSM/VF/VFO2-C/VFO257Q.Seq.d/ 1019 0.0
CFI367 (CFI367Q) /CSM/CF/CFI3-C/CFI367Q.Seq.d/ 878 0.0
VFG265 (VFG265Q) /CSM/VF/VFG2-C/VFG265Q.Seq.d/ 761 0.0
SSB129 (SSB129Q) /CSM/SS/SSB1-B/SSB129Q.Seq.d/ 761 0.0
VFM873 (VFM873Q) /CSM/VF/VFM8-D/VFM873Q.Seq.d/ 747 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BJ172173|BJ172173.1 Physcomitrella patens subsp. patens cDNA clone:pph31g22, 3' end, single read. 630 e-177 1
AB026669|AB026669.1 Acinetobacter sp. NCIMB9871 cyclohexanol metabolic gene cluster (orf18, orf17, orf16, orf15, orf14, orf13, orf12, chnB), partial and complete cds. 46 3e-05 2
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence. 38 0.001 7
BI426611|BI426611.1 sag05d03.y1 Gm-c1080 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1080-173 5' similar to TR:Q9XHH0 Q9XHH0 ACETOACETYL COA THIOLASE ;, mRNA sequence. 54 0.003 1
BI967346|BI967346.1 GM830001B10E12 Gm-r1083 Glycine max cDNA clone Gm-r1083-239 3', mRNA sequence. 54 0.003 1
BG042100|BG042100.1 sv14d06.y1 Gm-c1056 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1056-1716 5' similar to TR:Q9XHH0 Q9XHH0 ACETOACETYL COA THIOLASE ;, mRNA sequence. 54 0.003 1
BM092818|BM092818.1 sah19c09.y3 Gm-c1086 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1086-1674 5' similar to TR:Q43637 Q43637 ACETOACETYL-COENZYME A THIOLASE ;, mRNA sequence. 54 0.003 1
AW395348|AW395348.1 sh46h12.y1 Gm-c1017 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1017-4800 5' similar to TR:Q43637 Q43637 ACETOACETYL-COENZYME A THIOLASE ;, mRNA sequence. 54 0.003 1
BE824283|BE824283.1 GM700023A20G3 Gm-r1070 Glycine max cDNA clone Gm-r1070-9126 3', mRNA sequence. 54 0.003 1
BG727021|BG727021.1 sae30b10.y1 Gm-c1067 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1067-4292 5' similar to TR:Q9XHH0 Q9XHH0 ACETOACETYL COA THIOLASE ;, mRNA sequence. 54 0.003 1
dna update 2003. 7.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BA000043_1320(BA000043|pid:none) Geobacillus kaustophilus HTA426... 164 4e-39
CP000922_1494(CP000922|pid:none) Anoxybacillus flavithermus WK1,... 160 8e-38
CP000875_4368(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 156 9e-37
CU458896_595(CU458896|pid:none) Mycobacterium abscessus chromoso... 155 2e-36
BA000043_2777(BA000043|pid:none) Geobacillus kaustophilus HTA426... 153 1e-35
BA000030_1687(BA000030|pid:none) Streptomyces avermitilis MA-468... 149 1e-34
AL939129_20(AL939129|pid:none) Streptomyces coelicolor A3(2) com... 148 3e-34
AE017221_330(AE017221|pid:none) Thermus thermophilus HB27, compl... 148 3e-34
CP000384_4672(CP000384|pid:none) Mycobacterium sp. MCS, complete... 147 4e-34
AL583924_200(AL583924|pid:none) Mycobacterium leprae strain TN c... 147 4e-34
protein update 2009. 4.13
PSORT

psg: 0.66 gvh: 0.35 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 1.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
32.0 %: peroxisomal
16.0 %: mitochondrial
12.0 %: nuclear
4.0 %: cytoskeletal

>> prediction for FC-AA04 is cyt

5' end seq. ID FC-AA04F
5' end seq.
>FC-AA04F.Seq
AATAATACACATAAAAAATTTATTAAATAAAAATGACTACAACAACAACAAATGAAGTTT
ATATAGTTGATTGTATTCGTACACCAATTGGTAGAGGATATAGTAATGGATCATTACATT
CAATACAACCAATTGATTTATTATCATATACACTGGACCAATTAATGAAAAGAAATCCAA
ATGTTGATAGAGGATTAGTTGAAGATGTTATTTGTGGTGTTGTATCACCATTAAGAGAAC
AAGGTGCAAACATAGCAAGATTTGCAGCATTAAAAGCCGGATTACCAATCAATGTGCCAG
GTGTTCAATTAAATAGAATGTGTGGATCAGGTCAACAAGCTATCCATTTTGGCTCGCAAG
CAATTAGATCAGGTGATATGGATATTGTTATTGGCTGTGGTGTAGAAATGATGAGTATAG
TACCAATGGGCAGTGATTGGCAATTAGATAATCCTAAATTTGTAGAAGGTTTTAATTTCA
AAGTACTTCATCAAGGTGTTTCCTCTGAAATGATTGCAGAGAAATATAATTTAACAAGAG
ATGAAA----------
Length of 5' end seq. 546
3' end seq. ID FC-AA04Z
3' end seq.
>FC-AA04Z.Seq
----------ACCACGTGCTCGTATTGTAACTTGTACAGTAGTTGGCTCTGATCCAGAAT
ATATGCTATTAGGTCCAATTCCAGCAACTATTAAAGCATTGGAAAAGAGTGGTCTCACTA
AAGATCAAATTGATCTATATGAAATTAATGAAGCCTTTGCATCTGTAGTTTTAGGTTGGA
AAAAGGAATTAAATATTGATTTAGATAAAATTAATCCAAATGGTGGTGCAATCGCACATG
GTCATCCATTAGGTGCAACTGGTTGTATTCTTATGACTAAAATGGTAAATGAATTAGAAA
GATCAAATAAAAAATACGCACTTCAAACAATGTGTATTGGTTTTGGTCAAGCAACTGCAA
CAATTATTGAAAATTGTTCATATAAACCAATTTCAAAATTATAAAAAAATAATAAAAAAC
TTTTATTAATTTAATTTATTAATTTAATTTATTAATTTAATTTATTTATTTATTAATTTA
AAAAAAAAAAAAAA
Length of 3' end seq. 484
Connected seq. ID FC-AA04P
Connected seq.
>FC-AA04P.Seq
AATAATACACATAAAAAATTTATTAAATAAAAATGACTACAACAACAACAAATGAAGTTT
ATATAGTTGATTGTATTCGTACACCAATTGGTAGAGGATATAGTAATGGATCATTACATT
CAATACAACCAATTGATTTATTATCATATACACTGGACCAATTAATGAAAAGAAATCCAA
ATGTTGATAGAGGATTAGTTGAAGATGTTATTTGTGGTGTTGTATCACCATTAAGAGAAC
AAGGTGCAAACATAGCAAGATTTGCAGCATTAAAAGCCGGATTACCAATCAATGTGCCAG
GTGTTCAATTAAATAGAATGTGTGGATCAGGTCAACAAGCTATCCATTTTGGCTCGCAAG
CAATTAGATCAGGTGATATGGATATTGTTATTGGCTGTGGTGTAGAAATGATGAGTATAG
TACCAATGGGCAGTGATTGGCAATTAGATAATCCTAAATTTGTAGAAGGTTTTAATTTCA
AAGTACTTCATCAAGGTGTTTCCTCTGAAATGATTGCAGAGAAATATAATTTAACAAGAG
ATGAAA----------ACCACGTGCTCGTATTGTAACTTGTACAGTAGTTGGCTCTGATC
CAGAATATATGCTATTAGGTCCAATTCCAGCAACTATTAAAGCATTGGAAAAGAGTGGTC
TCACTAAAGATCAAATTGATCTATATGAAATTAATGAAGCCTTTGCATCTGTAGTTTTAG
GTTGGAAAAAGGAATTAAATATTGATTTAGATAAAATTAATCCAAATGGTGGTGCAATCG
CACATGGTCATCCATTAGGTGCAACTGGTTGTATTCTTATGACTAAAATGGTAAATGAAT
TAGAAAGATCAAATAAAAAATACGCACTTCAAACAATGTGTATTGGTTTTGGTCAAGCAA
CTGCAACAATTATTGAAAATTGTTCATATAAACCAATTTCAAAATTATAAAAAAATAATA
AAAAACTTTTATTAATTTAATTTATTAATTTAATTTATTAATTTAATTTATTTATTTATT
AATTTAAAAAAAAAAAAAAA
Length of connected seq. 1030
Full length Seq ID -
Full length Seq. -
Length of full length seq. -