>FC-IC1768 (FC-IC1768Q) /CSM/FC-IC/FC-IC1768Q.Seq.d/
XXXXXXXXXXTTAATATTTTGCCATCCTTTCTTTAAGAGGGAGACTAAGAAATTNATTGA
TTTGAATGATGTTGGTGGCAACTTCTCTTTCAGTTAATTCGATGTGACCGACAGCGACGG
CTAAACATAAGACTTTCTTAAGTTGGAATTTGACGGTTGATTTGACATCATTGATCTTTG
AGGCCATATCTTCAGAGTGAGTAAGGAGGGTTGGGAATTTACCGACCTTGTTGAGACCTG
GACCTAAGAGTTTTGGAACTTGACGTAAGATAGATTCAGAGGCTAAGAAAGCATCGTATT
TCTCATGAGAGCTTCTTGATGGCTTTCTTGTTCTTTGGACCGATTTTCTTTAAGGCTTCA
ATATCCATGAATTCAGCACCGATTTTAGTGGCTTCATCACAATGTTGTTGATCAGCAAAG
ACACAAACGCTTAATTTTGGTTTGGTGACGGT

---nilpsfl*egd*eix*fe*cwwqllfqlircdrqrrlnirls*vgi*rli*hh*slr
pylqse*gglgiyrpc*dldlrvleldvr*IQRLRKHRISHESFLMAFLFFGPIFFKASI
SMNSAPILVASSQCC*saktqtlnfglvt

Frame A:
---*yfailslrgrlrnxli*mmlvatslsvnsm*ptatakhktflswnltvdltslife
aisse*vrrvgnlptllrpgpksfgt*rkidseakkasyfs*elldgflvlwtdfl*gfn
ihefstdfsgfitmlliskdtna*fwfgdg


Frame B:
---nilpsfl*egd*eix*fe*cwwqllfqlircdrqrrlnirls*vgi*rli*hh*slr
pylqse*gglgiyrpc*dldlrvleldvr*IQRLRKHRISHESFLMAFLFFGPIFFKASI
SMNSAPILVASSQCC*saktqtlnfglvt


Frame C:
---ifchpffkretkkxidlndvggnfsfs*fdvtdsdg*t*dflklefdg*fdiidl*g
hifrvskegweftdlvetwt*efwnlt*drfrg*esivflmras*wlscsldrfslrlqy
p*iqhrf*wlhhnvvdqqrhkrlilvw*r

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1768 (FC-IC1768Q) /CSM/FC-IC/FC-IC1768Q.Seq.d/                   870   0.0
VFL861 (VFL861Q) /CSM/VF/VFL8-C/VFL861Q.Seq.d/                        823   0.0
FCL-AA22 (FCL-AA22Q) /CSM/FCL/FCL-AA/FCL-AA22Q.Seq.d/                 823   0.0
FC-IC1388 (FC-IC1388Q) /CSM/FC-IC/FC-IC1388Q.Seq.d/                   823   0.0
FC-IC1111 (FC-IC1111Q) /CSM/FC-IC/FC-IC1111Q.Seq.d/                   823   0.0
FC-IC0845 (FC-IC0845Q) /CSM/FC-IC/FC-IC0845Q.Seq.d/                   823   0.0
FC-AH14 (FC-AH14Q) /CSM/FC/FC-AH/FC-AH14Q.Seq.d/                      823   0.0
FC-140 (FC-140Q) /CSM/CG/CG-FC/FC-140Q.Seq.d/                         823   0.0
FC-BQ02 (FC-BQ02Q) /CSM/FC/FC-BQ/FC-BQ02Q.Seq.d/                      801   0.0
VSD564 (VSD564Q) /CSM/VS/VSD5-C/VSD564Q.Seq.d/                        575   e-163

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   472   0.0    3
BF779798|BF779798.1 3240-28 hindgut and Malpighian tubule cDNA library Ctenocephalides felis cDNA clone 3240-28, mRNA sequence.    44   1e-08  3
BD282973|BD282973.1 Flea head, nerve cord, hindgut and malpighian tubule nucleic acid molecules, proteins and uses thereof.    44   1e-08  3
AZ688914|AZ688914.1 ENTHM26TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44   6e-05  2
CA849839|CA849839.1 kl06a02.y1 Ascaris suum embryo SL1 TOPO v1 Ascaris suum cDNA 5' similar to WP:CE25552 Y71F9AL.13 ;, mRNA sequence.    58   1e-04  1
CA954545|CA954545.1 kl44d03.y1 Ascaris suum embryo SL1 TOPO v1 Ascaris suum cDNA 5' similar to WP:CE25552 Y71F9AL.13 ;, mRNA sequence.    58   1e-04  1
BM283706|BM283706.1 ki51b02.y1 Ascaris suum male gut SL1 TOPO v1 Murphy Chiapelli McCarter Ascaris suum cDNA 5' similar to WP:CE25552 Y71F9AL.13 ;, mRNA sequence.    58   1e-04  1
CB039909|CB039909.1 As_L3_43A07_SKPL Ascaris suum (parasitic nematode) L3 stage Ascaris suum cDNA clone As_L3_43A07 5' similar to Y71F9AL.13a CE25552 locus:rpl-1 status:Confirmed TR:Q9N4I4, mRNA sequence.    58   1e-04  1
CB014241|CB014241.1 As_tgz_76E05_SKPL Ascaris suum adult male testis germinal zone from Alan Scott Ascaris suum cDNA clone As_tgz_76E05 5' similar to Y71F9AL.13a CE25552 locus:rpl-1 status:Confirmed TR:Q9N4I4, mRNA sequence.    58   1e-04  1
CB014129|CB014129.1 As_tgz_74G07_SKPL Ascaris suum adult male testis germinal zone from Alan Scott Ascaris suum cDNA clone As_tgz_74G07 5' similar to Y71F9AL.13a CE25552 locus:rpl-1 status:Confirmed TR:Q9N4I4, mRNA sequence.    58   1e-04  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86L05) RecName: Full=60S ribosomal protein L10a;  &AC117075_90...   162   1e-53
AY389924_1(AY389924|pid:none) Protopterus dolloi ribosomal prote...   127   1e-38
AY190729_1(AY190729|pid:none) Pagrus major ribosomal protein L10...   129   1e-38
AK153863_1(AK153863|pid:none) Mus musculus 2 days neonate thymus...   128   2e-38
AY890829_1(AY890829|pid:none) Synthetic construct Homo sapiens c...   128   2e-38
U12404_1(U12404|pid:none) Human Csa-19 mRNA, complete cds.            128   2e-38
CP000584_290(CP000584|pid:none) Ostreococcus lucimarinus CCE9901...   129   6e-38
BT073371_1(BT073371|pid:none) Oncorhynchus mykiss clone omyk-evn...   126   1e-37
(Q90YV8) RecName: Full=60S ribosomal protein L10a;  &AF401564_1(...   126   1e-37
DQ629164_1(DQ629164|pid:none) Sus scrofa RPL10a (RPL10A) mRNA, c...   128   1e-37

 psg: 0.79  gvh: 0.56  alm: 0.31  top: 0.27  tms: 0.07  mit: 0.46  mip: 0.00
 nuc: 0.02  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: mitochondrial
	 16.0 %: Golgi
	 16.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: vacuolar

>> prediction for FC-IC1768 is mit

>FC-IC1768Z.Seq
NNNNNNNNNNTTAATATTTTGCCATCCTTTCTTTAAGAGGGAGACTAAGAAATTNATTGA
TTTGAATGATGTTGGTGGCAACTTCTCTTTCAGTTAATTCGATGTGACCGACAGCGACGG
CTAAACATAAGACTTTCTTAAGTTGGAATTTGACGGTTGATTTGACATCATTGATCTTTG
AGGCCATATCTTCAGAGTGAGTAAGGAGGGTTGGGAATTTACCGACCTTGTTGAGACCTG
GACCTAAGAGTTTTGGAACTTGACGTAAGATAGATTCAGAGGCTAAGAAAGCATCGTATT
TCTCATGAGAGCTTCTTGATGGCTTTCTTGTTCTTTGGACCGATTTTCTTTAAGGCTTCA
ATATCCATGAATTCAGCACCGATTTTAGTGGCTTCATCACAATGTTGTTGATCAGCAAAG
ACACAAACGCTTAATTTTGGTTTGGTGACGGT