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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1753
Library FC-IC
(Link to library)
Clone ID FC-IC1753
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>FC-IC1753 (FC-IC1753Q) /CSM/FC-IC/FC-IC1753Q.Seq.d/
XXXXXXXXXXTGTGTTTTGGAGTAGTTGGAGCTGGTGTGGTTGGTTTTGGAGTGGTTGGA
GCTGGTGTTGTTGGTTTTGGGGTGGTTGGAGCTGGTGTTGTTGGTTTTGGAGTAGTTGGA
GCTGGTGTGGTTGGTTTTGGTGTGGTTGGAGCTGGTGTAGTTGGAGCTGGGGTTGTTGTT
TTTGGAGTATAAGGAAGAACACCCTTAAATCCACCTGCTGGGTAATATGAACATGAAACT
TCAGATTTATCTGGACATATTGTCTTTGCGCAACCATATGAAGT
sequence update 2001.11.23
Translated Amino Acid sequence 
---VFWSSWSWCGWFWSGWSWCCWFWGGWSWCCWFWSSWSWCGWFWCGWSWCSWSWGCCF
WSIRKNTLKSTCWVI*t*nfrfiwtyclcati*s
Translated Amino Acid sequence (All Frames) 
Frame A:
---VFWSSWSWCGWFWSGWSWCCWFWGGWSWCCWFWSSWSWCGWFWCGWSWCSWSWGCCF
WSIRKNTLKSTCWVI*t*nfrfiwtyclcati*s


Frame B:
---cfgvvgagvvgfgvvgagvvgfgvvgagvvgfgvvgagvvgfgvvgagvvgagvvvf
gv*grtplnppag*yehetsdlsghivfaqpye


Frame C:
---vle*lelvwlvlewlelvllvlgwlelvllvle*lelvwlvlvwlelv*lelgllfl
eykeehp*ihllgnmnmklqiyldilslrnhmk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1785 (FC-IC1785Q) /CSM/FC-IC/FC-IC1785Q.Seq.d/                   254   6e-67
FC-IC1764 (FC-IC1764Q) /CSM/FC-IC/FC-IC1764Q.Seq.d/                   254   6e-67
FC-IC1753 (FC-IC1753Q) /CSM/FC-IC/FC-IC1753Q.Seq.d/                   254   6e-67
FC-IC1748 (FC-IC1748Q) /CSM/FC-IC/FC-IC1748Q.Seq.d/                   254   6e-67
FC-IC1735 (FC-IC1735Q) /CSM/FC-IC/FC-IC1735Q.Seq.d/                   254   6e-67
FC-IC1728 (FC-IC1728Q) /CSM/FC-IC/FC-IC1728Q.Seq.d/                   254   6e-67
FC-IC1720 (FC-IC1720Q) /CSM/FC-IC/FC-IC1720Q.Seq.d/                   254   6e-67
FC-IC1523 (FC-IC1523Q) /CSM/FC-IC/FC-IC1523Q.Seq.d/                   254   6e-67
FC-IC1519 (FC-IC1519Q) /CSM/FC-IC/FC-IC1519Q.Seq.d/                   254   6e-67
FC-IC1511 (FC-IC1511Q) /CSM/FC-IC/FC-IC1511Q.Seq.d/                   254   6e-67
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB088483|AB088483.1 Dictyostelium discoideum gene for gamete and mating-type specific protein A, complete cds.   254   1e-67  2
AK098314|AK098314.1 Homo sapiens cDNA FLJ40995 fis, clone UTERU2015830.    36   2.5    2
AP004742|AP004742.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0026F02, WORKING DRAFT SEQUENCE, 1 ordered pieces.    42   3.9    1
AQ408713|AQ408713.1 HS_5102_B2_G12_T7A RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=678 Col=24 Row=N, DNA sequence.    42   3.9    1
CB676575|CB676575.1 OSJNEe12O10.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA clone OSJNEe12O10 5', mRNA sequence.    42   3.9    1
CB676577|CB676577.1 OSJNEe12O11.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA clone OSJNEe12O11 5', mRNA sequence.    42   3.9    1
AP004681|AP004681.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0040M10, WORKING DRAFT SEQUENCE, 1 ordered pieces.    42   3.9    1
AC105599|AC105599.5 Rattus norvegicus clone CH230-127D2, WORKING DRAFT SEQUENCE, 7 unordered pieces.    40   15     1
AC106421|AC106421.5 Rattus norvegicus clone CH230-126J7, *** SEQUENCING IN PROGRESS ***, 23 unordered pieces.    40   15     1
BQ263300|BQ263300.1 faa21d06.y1 Sugano SJD adult male Danio rerio cDNA clone 5913251 5', mRNA sequence.    40   15     1
dna update 2003.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB088483_1(AB088483|pid:none) Dictyostelium discoideum gmsA gene...    75   9e-13
AY720896_1(AY720896|pid:none) Cynodon dactylon Cyn d 24 mRNA, pa...    37   0.16
AP003536_22(AP003536|pid:none) Oryza sativa Japonica Group genom...    35   0.61
AC116979_83(AC116979|pid:none) Dictyostelium discoideum chromoso...    35   0.61
DQ167192_1(DQ167192|pid:none) Triticum monococcum pathogenesis-r...    35   1.0
AK100940_1(AK100940|pid:none) Oryza sativa Japonica Group cDNA c...    34   1.3
BT039519_1(BT039519|pid:none) Zea mays full-length cDNA clone ZM...    34   1.8
EU724922_1(EU724922|pid:none) Zea mays subsp. parviglumis isolat...    34   1.8
EU724938_1(EU724938|pid:none) Zea mays subsp. parviglumis isolat...    34   1.8
DQ147077_1(DQ147077|pid:none) Zea mays subsp. parviglumis isolat...    34   1.8
protein update 2009. 5.21
PSORT 

 psg: 0.75  gvh: 0.71  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 1.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 20.0 %: plasma membrane
	 16.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for FC-IC1753 is pla
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-IC1753Z
3' end seq. 
>FC-IC1753Z.Seq
NNNNNNNNNNTGTGTTTTGGAGTAGTTGGAGCTGGTGTGGTTGGTTTTGGAGTGGTTGGA
GCTGGTGTTGTTGGTTTTGGGGTGGTTGGAGCTGGTGTTGTTGGTTTTGGAGTAGTTGGA
GCTGGTGTGGTTGGTTTTGGTGTGGTTGGAGCTGGTGTAGTTGGAGCTGGGGTTGTTGTT
TTTGGAGTATAAGGAAGAACACCCTTAAATCCACCTGCTGGGTAATATGAACATGAAACT
TCAGATTTATCTGGACATATTGTCTTTGCGCAACCATATGAAGT
Length of 3' end seq. 284
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -