FC-IC1728
Library FC-IC
(Link to library)
Clone ID FC-IC1728
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>FC-IC1728 (FC-IC1728Q) /CSM/FC-IC/FC-IC1728Q.Seq.d/
XXXXXXXXXXTTGTCCTTGATCTTTTTTTGGAGTTTGGTATGAAGTCCAATTTACTGTAA
GAGTTGATGTTGGGGCTGGTGTTGTTGGGGCTGGTGTTGTTGGTTTTGGAGTAGTTGGAG
CTGGTGTGGTTGGTTTTGGAGTGGTTGGAGCTGGTGTTGTTGGTTTTGGGGTGGTTGGAG
CTGGTGTTGTTGGTTTTGGAGTAGTTGGAGCTGGTGTGGTTGGTTTTGGTGTGGTTGGAG
CTGGTGTAGTTGGAGCTGGGGTTGTTGTTTTTGGAGTATAAGGAAGAACACCCTTAAATC
CACCTGCTGGGTAATATGAACATGAAACTTCAGATTTATCTGGACATATTGTCTTTGCGC
AACCATATGAAGT
sequence update 2001.11.23
Translated Amino Acid sequence
---cp*SFFGVWYEVQFTVRVDVGAGVVGAGVVGFGVVGAGVVGFGVVGAGVVGFGVVGA
GVVGFGVVGAGVVGFGVVGAGVVGAGVVVFGV*grtplnppag*yehetsdlsghivfaq
pye


Translated Amino Acid sequence (All Frames)
Frame A:
---cp*SFFGVWYEVQFTVRVDVGAGVVGAGVVGFGVVGAGVVGFGVVGAGVVGFGVVGA
GVVGFGVVGAGVVGFGVVGAGVVGAGVVVFGV*grtplnppag*yehetsdlsghivfaq
pye


Frame B:
---vldlflefgmksnll*elmlglvllglvllvle*lelvwlvlewlelvllvlgwlel
vllvle*lelvwlvlvwlelv*lelgllfleykeehp*ihllgnmnmklqiyldilslrn
hmk


Frame C:
---sliffwslv*spiycks*cwgwccwgwccwfwsswswcgwfwsgwswccwfwggwsw
ccwfwsswswcgwfwcgwswcswswgccfwsirkntlkstcwvi*t*nfrfiwtyclcat
i*s


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-IC1785 (FC-IC1785Q) /CSM/FC-IC/FC-IC1785Q.Seq.d/ 240 1e-62
FC-IC1764 (FC-IC1764Q) /CSM/FC-IC/FC-IC1764Q.Seq.d/ 240 1e-62
FC-IC1753 (FC-IC1753Q) /CSM/FC-IC/FC-IC1753Q.Seq.d/ 240 1e-62
FC-IC1748 (FC-IC1748Q) /CSM/FC-IC/FC-IC1748Q.Seq.d/ 240 1e-62
FC-IC1735 (FC-IC1735Q) /CSM/FC-IC/FC-IC1735Q.Seq.d/ 240 1e-62
FC-IC1728 (FC-IC1728Q) /CSM/FC-IC/FC-IC1728Q.Seq.d/ 240 1e-62
FC-IC1720 (FC-IC1720Q) /CSM/FC-IC/FC-IC1720Q.Seq.d/ 240 1e-62
FC-IC1523 (FC-IC1523Q) /CSM/FC-IC/FC-IC1523Q.Seq.d/ 240 1e-62
FC-IC1519 (FC-IC1519Q) /CSM/FC-IC/FC-IC1519Q.Seq.d/ 240 1e-62
FC-IC1511 (FC-IC1511Q) /CSM/FC-IC/FC-IC1511Q.Seq.d/ 240 1e-62

own update 2001.11.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AB088483|AB088483.1 Dictyostelium discoideum gene for gamete and mating-type specific protein A, complete cds. 240 6e-87 2
AK098314|AK098314.1 Homo sapiens cDNA FLJ40995 fis, clone UTERU2015830. 36 4.4 2
AQ408713|AQ408713.1 HS_5102_B2_G12_T7A RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=678 Col=24 Row=N, genomic survey sequence. 42 5.2 1
AQ210760|AQ210760.1 HS_2229_A1_E09_MR CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=2229 Col=17 Row=I, DNA sequence. 36 5.6 2
AL360229|AL360229.16 Human DNA sequence from clone RP11-313N18 on chromosome 10. 36 6.0 2

dna update 2003. 2.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB088483_1(AB088483|pid:none) Dictyostelium discoideum gmsA gene... 75 9e-13
AY720896_1(AY720896|pid:none) Cynodon dactylon Cyn d 24 mRNA, pa... 37 0.16
AP003536_22(AP003536|pid:none) Oryza sativa Japonica Group genom... 35 0.60
AC116979_83(AC116979|pid:none) Dictyostelium discoideum chromoso... 35 0.60
DQ167192_1(DQ167192|pid:none) Triticum monococcum pathogenesis-r... 35 1.0
AK100940_1(AK100940|pid:none) Oryza sativa Japonica Group cDNA c... 34 1.3
BT039519_1(BT039519|pid:none) Zea mays full-length cDNA clone ZM... 34 1.7
EU724922_1(EU724922|pid:none) Zea mays subsp. parviglumis isolat... 34 1.7
EU724938_1(EU724938|pid:none) Zea mays subsp. parviglumis isolat... 34 1.7
DQ147077_1(DQ147077|pid:none) Zea mays subsp. parviglumis isolat... 34 1.7
protein update 2009. 5.21
PSORT

psg: 0.75 gvh: 0.51 alm: 0.25 top: 0.60 tms: 0.20 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

28.0 %: endoplasmic reticulum
16.0 %: nuclear
16.0 %: vacuolar
16.0 %: plasma membrane
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for FC-IC1728 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-IC1728Z
3' end seq.
>FC-IC1728Z.Seq
NNNNNNNNNNTTGTCCTTGATCTTTTTTTGGAGTTTGGTATGAAGTCCAATTTACTGTAA
GAGTTGATGTTGGGGCTGGTGTTGTTGGGGCTGGTGTTGTTGGTTTTGGAGTAGTTGGAG
CTGGTGTGGTTGGTTTTGGAGTGGTTGGAGCTGGTGTTGTTGGTTTTGGGGTGGTTGGAG
CTGGTGTTGTTGGTTTTGGAGTAGTTGGAGCTGGTGTGGTTGGTTTTGGTGTGGTTGGAG
CTGGTGTAGTTGGAGCTGGGGTTGTTGTTTTTGGAGTATAAGGAAGAACACCCTTAAATC
CACCTGCTGGGTAATATGAACATGAAACTTCAGATTTATCTGGACATATTGTCTTTGCGC
AACCATATGAAGT
Length of 3' end seq. 373
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -