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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1707
Library FC-IC
(Link to library)
Clone ID FC-IC1707
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13402-1
Original site URL
Representative seq. ID FC-IC1707E
(Link to Original site)
Representative DNA sequence 
>FC-IC1707 (FC-IC1707Q) /CSM/FC-IC/FC-IC1707Q.Seq.d/
ACTCCATCCCAATTGGCATACCAAAGTGGGAATTCGGAACCACCAGTATAACCACCCATG
ATTGGAATCCATTGTGAAGCTGAGGTGTATACACCAATATGAGCACCAACACTTTGTAAA
CCTGAAATTAAGCCTTCAAAAAATGCAACATTTGCTGATTGATCACCACTCCAATCTGAT
GATTCGATATCTAACCATACCATACCATAGTTAGCATTGTATCCACTTAAGTAGTTAACT
AAAGCTGGACCTTGATCTTGTGGGTTACCACAATTAAAACATGGGAAAAGATAAGTATCA
ACATATTCGACACCAGCTTCACGTGCACATGCAATACTGTTTACAACTTCTGGATCAACT
TGACCAGTTTCCATATAACCTCTAATGATTGCAAATTCAAAACCTTGATTTAGCATACAT
TGGAAATCACCTACAGAACTTNCCTTGTGAAATATCAACACCTGAAAATGCATTAATAGC
ACCAAATAATGCAATAAAAGTAATTAATAAAAGAAATAATCTC
sequence update 2001.11.10
Translated Amino Acid sequence 
sipigipkwefgttsitthdwnpl*s*gvytnmstntl*t*n*afkkcnic*littpi**
fdi*pyhtivsivst*vvn*SWTLILWVTTIKTWEKISINIFDTSFTCTCNTVYNFWINL
TSFHITSNDCKFKTLI*htleityrtxlvkyqhlkmh**hqimq*k*likeii
Translated Amino Acid sequence (All Frames) 
Frame A:
tpsqlayqsgnseppv*ppmigihceaevytpi*aptlckpeikpsknatfad*splqsd
dsisnhtip*lalyplk*ltkagp*scglpqlkhgkr*vstystpasrahailfttsgst
*pvsi*plmianskp*fsihwksptelxl*nint*kcinstk*cnksn**kk*s


Frame B:
lhpnwhtkvgirnhqynhp*lesivklrcihqyehqhfvnlklslqkmqhllidhhsnlm
iryltipyhs*hcihlss*lkldldlvgyhn*nmgkdkyqhirhqlhvhmqyclqlldql
dqfpynl**lqiqnldlayignhlqnxpceistpenaliapnnaikvinkrnnl


Frame C:
sipigipkwefgttsitthdwnpl*s*gvytnmstntl*t*n*afkkcnic*littpi**
fdi*pyhtivsivst*vvn*SWTLILWVTTIKTWEKISINIFDTSFTCTCNTVYNFWINL
TSFHITSNDCKFKTLI*htleityrtxlvkyqhlkmh**hqimq*k*likeii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1707 (FC-IC1707Q) /CSM/FC-IC/FC-IC1707Q.Seq.d/                  1031   0.0
SSF717 (SSF717Q) /CSM/SS/SSF7-A/SSF717Q.Seq.d/                       1021   0.0
VSG411 (VSG411Q) /CSM/VS/VSG4-A/VSG411Q.Seq.d/                       1007   0.0
VSH309 (VSH309Q) /CSM/VS/VSH3-A/VSH309Q.Seq.d/                        993   0.0
SSJ673 (SSJ673Q) /CSM/SS/SSJ6-D/SSJ673Q.Seq.d/                        835   0.0
SSE485 (SSE485Q) /CSM/SS/SSE4-D/SSE485Q.Seq.d/                        228   7e-59
SSD815 (SSD815Q) /CSM/SS/SSD8-A/SSD815Q.Seq.d/                         52   9e-06
SSC846 (SSC846Q) /CSM/SS/SSC8-B/SSC846Q.Seq.d/                         52   9e-06
SSL509 (SSL509Q) /CSM/SS/SSL5-A/SSL509Q.Seq.d/                         40   0.033
SSH694 (SSH694Q) /CSM/SS/SSH6-D/SSH694Q.Seq.d/                         40   0.033
own update 2001.11.19
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    50   4e-12  5
BI323493|BI323493.1 kt71h10.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q20964 Q20964 F58B3.1 PROTEIN. [1] ;, mRNA sequence.    56   5e-04  1
BI742232|BI742232.1 kt92a11.y1 Strongyloides ratti L3 adult pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q20964 Q20964 F58B3.1 PROTEIN. [1] ;, mRNA sequence.    56   5e-04  1
BQ090724|BQ090724.1 ku19d01.y1 Strongyloides ratti L3 adult pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q20964 Q20964 F58B3.1 PROTEIN. [1] ;, mRNA sequence.    56   5e-04  1
BI142617|BI142617.1 kt43c05.y1 Strongyloides ratti L3 adult pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q20964 Q20964 F58B3.1 PROTEIN. [1] ;, mRNA sequence.    56   5e-04  1
BI073538|BI073538.1 kt32a07.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q20964 Q20964 F58B3.1 PROTEIN. [1] ;, mRNA sequence.    56   5e-04  1
BX649265|BX649265.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-134G22.    40   0.009  5
CC072091|CC072091.1 CSU-K33r.19A22.T7 CSU-K33r Aedes aegypti genomic clone CSU-K33r.19A22, DNA sequence.    48   0.12   1
AC107568|AC107568.4 Rattus norvegicus clone CH230-128H2, WORKING DRAFT SEQUENCE, 1 ordered piece.    46   0.47   1
AC141581|AC141581.1 Rattus norvegicus clone CH230-506D19, WORKING DRAFT SEQUENCE, 28 unordered pieces.    46   0.47   1
dna update 2003.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54BQ8) RecName: Full=Probable GH family 25 lysozyme 4;        ...   313   2e-85
T22896(T22896) hypothetical protein F58B3.3 - Caenorhabditis ele...   103   3e-21
T22895(T22895) hypothetical protein F58B3.2 - Caenorhabditis ele...   100   3e-20
EF064797_1(EF064797|pid:none) Meloidogyne artiellia lysozyme 1 (...    94   3e-18
AF047656_1(AF047656|pid:none) Caenorhabditis elegans cosmid F17E...    83   4e-15
(Q8T2I5) RecName: Full=Probable GH family 25 lysozyme 3;        ...    80   3e-14
AF034843_1(AF034843|pid:none) Entamoeba histolytica lysozyme II ...    79   5e-14
AC116984_99(AC116984|pid:none) Dictyostelium discoideum chromoso...    79   5e-14
(Q27650) RecName: Full=Lysozyme;          EC=3.2.1.17; AltName: ...    79   9e-14
S66599(S66599;S66462;S55506)probable lysozyme lys4 (EC 3.2.1.-) ...    75   1e-12
protein update 2009. 7. 2
PSORT 

 psg: 0.95  gvh: 0.58  alm: 0.48  top: 0.47  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for FC-IC1707 is cyt
5' end seq. ID FC-IC1707F
5' end seq. 
>FC-IC1707F.Seq
ACTCCATCCCAATTGGCATACCAAAGTGGGAATTCGGAACCACCAGTATAACCACCCATG
ATTGGAATCCATTGTGAAGCTGAGGTGTATACACCAATATGAGCACCAACACTTTGTAAA
CCTGAAATTAAGCCTTCAAAAAATGCAACATTTGCTGATTGATCACCACTCCAATCTGAT
GATTCGATATCTAACCATACCATACCATAGTTAGCATTGTATCCACTTAAGTAGTTAACT
AAAGCTGGACCTTGATCTTGTGGGTTACCACAATTAAAACATGGGAAAAGATAAGTATCA
ACATATTCGACACCAGCTTCACGTGCACATGCAATACTGTTTACAACTTCTGGATCAACT
TGACCAGTTTCCATATAACCTCTAATGATTGCAAATTCAAAACCTTGATTTAGCATACAT
TGGAAATCACCTACAGAACTTCCTTGTGAAATATCAACACCTGAAAATGCATTAATAGCA
CCAAATAATGCAATAAAAGTAATTAATAAAAGAAATAATCTCNNNNNNNNNN
Length of 5' end seq. 532
3' end seq. ID FC-IC1707Z
3' end seq. 
>FC-IC1707Z.Seq
NNNNNNNNNNACTCCATCCCAATTGGCATACCAAAGTGGGAATTCGGAACCACCAGTATA
ACCACCCATGATTGGAATCCATTGTGAAGCTGAGGTGTATACACCAATATGAGCACCAAC
ACTTTGTAAACCTGAAATTAAGCCTTCAAAAAATGCAACATTTGCTGATTGATCACCACT
CCAATCTGATGATTCGATATCTAACCATACCATACCATAGTTAGCATTGTATCCACTTAA
GTAGTTAACTAAAGCTGGACCTTGATCTTGTGGGTTACCACAATTAAAACATGGGAAAAG
ATAAGTATCAACATATTCGACACCAGCTTCACGTGCACATGCAATACTGTTTACAACTTC
TGGATCAACTTGACCAGTTTCCATATAACCTCTAATGATTGCAAATTCAAAACCTTGATT
TAGCATACATTGGAAATCACCTACAGAACTTNCCTTGTGAAATATCAACACCTGAAAATG
CATTAATAGCACCAAATAATGCAATAAAAGTAATTAATAAAAGAAATAATCTC
Length of 3' end seq. 533
Connected seq. ID FC-IC1707P
Connected seq. 
>FC-IC1707P.Seq
ACTCCATCCCAATTGGCATACCAAAGTGGGAATTCGGAACCACCAGTATAACCACCCATG
ATTGGAATCCATTGTGAAGCTGAGGTGTATACACCAATATGAGCACCAACACTTTGTAAA
CCTGAAATTAAGCCTTCAAAAAATGCAACATTTGCTGATTGATCACCACTCCAATCTGAT
GATTCGATATCTAACCATACCATACCATAGTTAGCATTGTATCCACTTAAGTAGTTAACT
AAAGCTGGACCTTGATCTTGTGGGTTACCACAATTAAAACATGGGAAAAGATAAGTATCA
ACATATTCGACACCAGCTTCACGTGCACATGCAATACTGTTTACAACTTCTGGATCAACT
TGACCAGTTTCCATATAACCTCTAATGATTGCAAATTCAAAACCTTGATTTAGCATACAT
TGGAAATCACCTACAGAACTTCCTTGTGAAATATCAACACCTGAAAATGCATTAATAGCA
CCAAATAATGCAATAAAAGTAATTAATAAAAGAAATAATCTC----------ACTCCATC
CCAATTGGCATACCAAAGTGGGAATTCGGAACCACCAGTATAACCACCCATGATTGGAAT
CCATTGTGAAGCTGAGGTGTATACACCAATATGAGCACCAACACTTTGTAAACCTGAAAT
TAAGCCTTCAAAAAATGCAACATTTGCTGATTGATCACCACTCCAATCTGATGATTCGAT
ATCTAACCATACCATACCATAGTTAGCATTGTATCCACTTAAGTAGTTAACTAAAGCTGG
ACCTTGATCTTGTGGGTTACCACAATTAAAACATGGGAAAAGATAAGTATCAACATATTC
GACACCAGCTTCACGTGCACATGCAATACTGTTTACAACTTCTGGATCAACTTGACCAGT
TTCCATATAACCTCTAATGATTGCAAATTCAAAACCTTGATTTAGCATACATTGGAAATC
ACCTACAGAACTTNCCTTGTGAAATATCAACACCTGAAAATGCATTAATAGCACCAAATA
ATGCAATAAAAGTAATTAATAAAAGAAATAATCTC
Length of connected seq. 1045
Full length Seq ID FC-IC1707E
Full length Seq. 
>FC-IC1707E.Seq
ACTCCATCCCAATTGGCATACCAAAGTGGGAATTCGGAACCACCAGTATAACCACCCATG
ATTGGAATCCATTGTGAAGCTGAGGTGTATACACCAATATGAGCACCAACACTTTGTAAA
CCTGAAATTAAGCCTTCAAAAAATGCAACATTTGCTGATTGATCACCACTCCAATCTGAT
GATTCGATATCTAACCATACCATACCATAGTTAGCATTGTATCCACTTAAGTAGTTAACT
AAAGCTGGACCTTGATCTTGTGGGTTACCACAATTAAAACATGGGAAAAGATAAGTATCA
ACATATTCGACACCAGCTTCACGTGCACATGCAATACTGTTTACAACTTCTGGATCAACT
TGACCAGTTTCCATATAACCTCTAATGATTGCAAATTCAAAACCTTGATTTAGCATACAT
TGGAAATCACCTACAGAACTTNCCTTGTGAAATATCAACACCTGAAAATGCATTAATAGC
ACCAAATAATGCAATAAAAGTAATTAATAAAAGAAATAATCTC
Length of full length seq. 523