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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1701
Library FC-IC
(Link to library)
Clone ID FC-IC1701
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID FC-IC1701P
(Link to Original site)
Representative DNA sequence 
>FC-IC1701 (FC-IC1701Q) /CSM/FC-IC/FC-IC1701Q.Seq.d/
ACCACCTGNTAAGNACTACGTTACCATATAAATCTTTACGAATATCAACATCACATTTCA
TGATTGAATTATAAGTAGTTTCATGAATACCAGCTGATTCCATACCCAAGAATGATGGTT
GGAAGAGGGCTTCTGGACAACGGAAACGTTCATTACCAATGGTGATGACTTGACCGTCTG
GTAATTCGTATGATTTCTCTAATGCTGATGATGAGGCAGCAGTTTGCATTTCAGCTTCAA
AATCTAAAGCAACGTAGGCTAATTTCTCCTTGATATCTCTGACAATTTCTCTTTCGGCAG
TGGTGGTGAATGAGTAACCACGTTCGGTTAAGATTTTCATCATGTAATCAGTGAGATCAC
GACCAGCTAAATCTAAACGCAAGATGGCATGTGGTAAAGCATAACCTTCATAAATTGGTX
XXXXXXXXXACCGAGCTCGGATCCACTAGTAACGGCCGCCCAGTGTGCTGGAATTTCGAG
CGGCCGCCCGGGCAGGTACCACCTGATAAGACTACGTTACCATATAAATCTTTACGAATA
TCAACATCACATTTCATGATTGAATTATAAGTAGTTTCATGAATACCAGCTGATTCCATA
CCCAAGAATGATGGTTGGAAGAGGGCTTCTGGACAACGGAAACGTTCATTACCAATGGTG
ATGACTTGACCGTCTGGTAATTCGTATGATTTCTCTAATGCTGATGATGAGGCAGCAGTT
TGCATTTCAGCTTCAAAATCTAAAGCAACGTAGGCTAATTTCTCCTTGATATCTCTGACA
ATTTCTCTTTCGGCAGTGGTGGTGAATGAGTAACCACGTTCGGTTAAGATTTTCATCATG
TAATCAGTGAGATCACGACCAGCTAAATCTAAACGCAAGATGGCATGTGGTAAAGCATAA
CCTTCATAAATTGGT
sequence update 2001.11. 5
Translated Amino Acid sequence 
ttx*xlryhinlyeyqhhis*lnyk*fheyqlipyprmmvgrglldngnvhyqw**ldrl
virmislmlmmrqqfafqlqnlkqrrlisp*yl*qflfrqww*msnhvrlrfsscnq*DH
DQLNLNARWHVVKHNLHKL---

---TELGSTSNGRPVCWNFERPPGQVPPDKTTLPYKSLRISTSHFMIEL*vvs*ipadsi
pkndgwkrasgqrkrslpmvmt*psgnsydfsnaddeaavcisaskskat*anfslislt
islsavvvne*prsvkifim*svrsrpakskrkmacgka*ps*ig
Translated Amino Acid sequence (All Frames) 
Frame A:
ttx*xlryhinlyeyqhhis*lnyk*fheyqlipyprmmvgrglldngnvhyqw**ldrl
virmislmlmmrqqfafqlqnlkqrrlisp*yl*qflfrqww*msnhvrlrfsscnq*DH
DQLNLNARWHVVKHNLHKL---

---TELGSTSNGRPVCWNFERPPGQVPPDKTTLPYKSLRISTSHFMIEL*vvs*ipadsi
pkndgwkrasgqrkrslpmvmt*psgnsydfsnaddeaavcisaskskat*anfslislt
islsavvvne*prsvkifim*svrsrpakskrkmacgka*ps*ig

Frame B:
ppxkxyvti*iftninitfhd*iissfmnts*fhtqe*wleegfwttetfitngddltvw
*fv*fl*c***gsslhfsfki*snvg*flldisdnfsfgsgge*vttfg*dfhhviseit
ts*i*tqdgmw*sitfinw---

---pssdplvtaaqcagissgrpgryhlirlryhinlyeyqhhis*lnyk*fheyqlipy
prmmvgrglldngnvhyqw**ldrlvirmislmlmmrqqfafqlqnlkqrrlisp*yl*q
flfrqww*msnhvrlrfsscnq*dhdqlnlnarwhvvkhnlhkl

Frame C:
hlxxttlpykslristshfmiel*vvs*ipadsipkndgwkrasgqrkrslpmvmt*psg
nsydfsnaddeaavcisaskskat*anfslisltislsavvvne*prsvkifim*svrsr
pakskrkmacgka*ps*ig---

---rarih**rppsvlefraaaragtt**dyvti*iftninitfhd*iissfmnts*fht
qe*wleegfwttetfitngddltvw*fv*fl*c***gsslhfsfki*snvg*flldisdn
fsfgsgge*vttfg*dfhhviseitts*i*tqdgmw*sitfinw
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1701 (FC-IC1701Q) /CSM/FC-IC/FC-IC1701Q.Seq.d/                  1742   0.0
VFE421 (VFE421Q) /CSM/VF/VFE4-A/VFE421Q.Seq.d/                        825   0.0
SFI369 (SFI369Q) /CSM/SF/SFI3-C/SFI369Q.Seq.d/                        809   0.0
FC-IC1696 (FC-IC1696Q) /CSM/FC-IC/FC-IC1696Q.Seq.d/                   805   0.0
FC-IC1131 (FC-IC1131Q) /CSM/FC-IC/FC-IC1131Q.Seq.d/                   799   0.0
FC-IC1597 (FC-IC1597Q) /CSM/FC-IC/FC-IC1597Q.Seq.d/                   789   0.0
FC-IC0954 (FC-IC0954Q) /CSM/FC-IC/FC-IC0954Q.Seq.d/                   789   0.0
VFM139 (VFM139Q) /CSM/VF/VFM1-B/VFM139Q.Seq.d/                        783   0.0
VFI314 (VFI314Q) /CSM/VF/VFI3-A/VFI314Q.Seq.d/                        783   0.0
VFD120 (VFD120Q) /CSM/VF/VFD1-A/VFD120Q.Seq.d/                        769   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   825   0.0    10
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   611   0.0    5
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   601   0.0    4
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   577   0.0    3
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   603   e-168  1
X03282|X03282.1 dictyostelium discoideum gene for actin A12.      595   e-166  1
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.   587   e-163  1
M14146|M14146.1 D.discoideum actin 15 gene, complete cds.         587   e-163  1
X03281|X03281.1 Dictyostelium discoideum gene for actin A8.       579   e-161  1
X03283|X03283.1 Dictyostelium discoideum gene for actin A3-S1.    496   e-136  1
dna update 2003.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   280   5e-74
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   280   5e-74
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        280   5e-74
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   277   3e-73
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   277   3e-73
EF455784_1(EF455784|pid:none) Hyperamoeba sp. ATCC PRA-39 actin ...   277   4e-73
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp...   276   7e-73
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   276   9e-73
AY615872_1(AY615872|pid:none) Phalansterium solitarium clone B a...   275   1e-72
AY294153_1(AY294153|pid:none) Platyamoeba placida actin mRNA, pa...   275   2e-72
protein update 2009. 5.21
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.12  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for FC-IC1701 is nuc
5' end seq. ID FC-IC1701F
5' end seq. 
>FC-IC1701F.Seq
ACCACCTGNTAAGNACTACGTTACCATATAAATCTTTACGAATATCAACATCACATTTCA
TGATTGAATTATAAGTAGTTTCATGAATACCAGCTGATTCCATACCCAAGAATGATGGTT
GGAAGAGGGCTTCTGGACAACGGAAACGTTCATTACCAATGGTGATGACTTGACCGTCTG
GTAATTCGTATGATTTCTCTAATGCTGATGATGAGGCAGCAGTTTGCATTTCAGCTTCAA
AATCTAAAGCAACGTAGGCTAATTTCTCCTTGATATCTCTGACAATTTCTCTTTCGGCAG
TGGTGGTGAATGAGTAACCACGTTCGGTTAAGATTTTCATCATGTAATCAGTGAGATCAC
GACCAGCTAAATCTAAACGCAAGATGGCATGTGGTAAAGCATAACCTTCATAAATTGGTN
NNNNNNNNN
Length of 5' end seq. 429
3' end seq. ID FC-IC1701Z
3' end seq. 
>FC-IC1701Z.Seq
NNNNNNNNNNACCGAGCTCGGATCCACTAGTAACGGCCGCCCAGTGTGCTGGAATTTCGA
GCGGCCGCCCGGGCAGGTACCACCTGATAAGACTACGTTACCATATAAATCTTTACGAAT
ATCAACATCACATTTCATGATTGAATTATAAGTAGTTTCATGAATACCAGCTGATTCCAT
ACCCAAGAATGATGGTTGGAAGAGGGCTTCTGGACAACGGAAACGTTCATTACCAATGGT
GATGACTTGACCGTCTGGTAATTCGTATGATTTCTCTAATGCTGATGATGAGGCAGCAGT
TTGCATTTCAGCTTCAAAATCTAAAGCAACGTAGGCTAATTTCTCCTTGATATCTCTGAC
AATTTCTCTTTCGGCAGTGGTGGTGAATGAGTAACCACGTTCGGTTAAGATTTTCATCAT
GTAATCAGTGAGATCACGACCAGCTAAATCTAAACGCAAGATGGCATGTGGTAAAGCATA
ACCTTCATAAATTGGT
Length of 3' end seq. 496
Connected seq. ID FC-IC1701P
Connected seq. 
>FC-IC1701P.Seq
ACCACCTGNTAAGNACTACGTTACCATATAAATCTTTACGAATATCAACATCACATTTCA
TGATTGAATTATAAGTAGTTTCATGAATACCAGCTGATTCCATACCCAAGAATGATGGTT
GGAAGAGGGCTTCTGGACAACGGAAACGTTCATTACCAATGGTGATGACTTGACCGTCTG
GTAATTCGTATGATTTCTCTAATGCTGATGATGAGGCAGCAGTTTGCATTTCAGCTTCAA
AATCTAAAGCAACGTAGGCTAATTTCTCCTTGATATCTCTGACAATTTCTCTTTCGGCAG
TGGTGGTGAATGAGTAACCACGTTCGGTTAAGATTTTCATCATGTAATCAGTGAGATCAC
GACCAGCTAAATCTAAACGCAAGATGGCATGTGGTAAAGCATAACCTTCATAAATTGGT-
---------ACCGAGCTCGGATCCACTAGTAACGGCCGCCCAGTGTGCTGGAATTTCGAG
CGGCCGCCCGGGCAGGTACCACCTGATAAGACTACGTTACCATATAAATCTTTACGAATA
TCAACATCACATTTCATGATTGAATTATAAGTAGTTTCATGAATACCAGCTGATTCCATA
CCCAAGAATGATGGTTGGAAGAGGGCTTCTGGACAACGGAAACGTTCATTACCAATGGTG
ATGACTTGACCGTCTGGTAATTCGTATGATTTCTCTAATGCTGATGATGAGGCAGCAGTT
TGCATTTCAGCTTCAAAATCTAAAGCAACGTAGGCTAATTTCTCCTTGATATCTCTGACA
ATTTCTCTTTCGGCAGTGGTGGTGAATGAGTAACCACGTTCGGTTAAGATTTTCATCATG
TAATCAGTGAGATCACGACCAGCTAAATCTAAACGCAAGATGGCATGTGGTAAAGCATAA
CCTTCATAAATTGGT
Length of connected seq. 905
Full length Seq ID -
Full length Seq. -
Length of full length seq. -