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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1688
Library FC-IC
(Link to library)
Clone ID FC-IC1688
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>FC-IC1688 (FC-IC1688Q) /CSM/FC-IC/FC-IC1688Q.Seq.d/
XXXXXXXXXXTTTTTTTTTTTTTTAGATTATTACAACAATTTGTTTTTTATTATTTATTA
AATAATTTAGAAACATTTTCTGTGAACAATTGATGGACCTGATTCGTCGTATTCTTCTTT
GGAGATCCACATTTGTTGGAAAGTTGAGAGTGAAGCTAAGATAGATCCACCAATCCAGAC
AGAGTATTTACGTTCTGGTGGAGCAATGATTTTAATTTTCATGGTTGATGGGGCTAAAGC
AGTTAATTCTTTGTTCATACGATCAGCAATACCTGGGAACATAGTTGT
sequence update 2001.11. 5
Translated Amino Acid sequence 
---fffldyynnlffiiy*ii*khfl*TIDGPDSSYSSLEIHICWKVESEAKIDPPIQTE
YLRSGGAMILIFMVDGAKAVNSLFIRSAIPGNIV
Translated Amino Acid sequence (All Frames) 
Frame A:
---ffff*iitticfllfik*frnifceqlmdlirrillwrstfvgklrvklr*ihqsrq
siyvlveq*f*fswlmglkqlilcsydqqylgt*l


Frame B:
---ffffrllqqfvfyyllnnletfsvnn*wt*fvvfffgdphlles*e*s*drstnpdr
vftfwwsndfnfhg*wg*ss*ffvhtisntwehsc


Frame C:
---fffldyynnlffiiy*ii*khfl*TIDGPDSSYSSLEIHICWKVESEAKIDPPIQTE
YLRSGGAMILIFMVDGAKAVNSLFIRSAIPGNIV
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1688 (FC-IC1688Q) /CSM/FC-IC/FC-IC1688Q.Seq.d/                   523   e-148
SLJ543 (SLJ543Q) /CSM/SL/SLJ5-B/SLJ543Q.Seq.d/                        509   e-144
SLI633 (SLI633Q) /CSM/SL/SLI6-B/SLI633Q.Seq.d/                        509   e-144
SLG853 (SLG853Q) /CSM/SL/SLG8-C/SLG853Q.Seq.d/                        509   e-144
SLG253 (SLG253Q) /CSM/SL/SLG2-C/SLG253Q.Seq.d/                        509   e-144
SLF113 (SLF113Q) /CSM/SL/SLF1-A/SLF113Q.Seq.d/                        509   e-144
SLE155 (SLE155Q) /CSM/SL/SLE1-C/SLE155Q.Seq.d/                        509   e-144
SLC351 (SLC351Q) /CSM/SL/SLC3-C/SLC351Q.Seq.d/                        509   e-144
SLC251 (SLC251Q) /CSM/SL/SLC2-C/SLC251Q.Seq.d/                        509   e-144
SLC155 (SLC155Q) /CSM/SL/SLC1-C/SLC155Q.Seq.d/                        509   e-144
own update 2001.11.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X03281) Dictyostelium discoideum gene for actin A8.              414   e-112  1
(AU284268) Dictyostelium discoideum gamete cDNA clone:FC-AG0...   414   e-112  1
(AU275195) Dictyostelium discoideum gamete cDNA clone:FC-IC1...   414   e-112  1
(AU272515) Dictyostelium discoideum gamete cDNA clone:FC-IC1...   414   e-112  1
(AU272386) Dictyostelium discoideum gamete cDNA clone:FC-IC1...   414   e-112  1
(AU272108) Dictyostelium discoideum gamete cDNA clone:FC-IC1...   414   e-112  1
(AU271857) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   414   e-112  1
(AU271563) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   414   e-112  1
(AU053715) Dictyostelium discoideum slug cDNA, clone SLJ543.      414   e-112  1
(AU053429) Dictyostelium discoideum slug cDNA, clone SLI633.      414   e-112  1
dna update 2009. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   151   7e-36
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   151   7e-36
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   151   7e-36
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        151   7e-36
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   149   2e-35
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   149   4e-35
(P02578) RecName: Full=Actin-1;  &ATAX(A92886;A03004) &V00002_1(...   149   4e-35
AY582843_1(AY582843|pid:none) Amoebidium parasiticum actin gene,...   149   4e-35
(Q554S6) RecName: Full=Actin-17; AltName: Full=Actin-2-sub 2;  &...   149   4e-35
K02960_1(K02960|pid:none) Dictyostelium discoideum actin 8 gene,...   148   5e-35
protein update 2009. 8.23
PSORT 

 psg: 0.75  gvh: 0.62  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for FC-IC1688 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-IC1688Z
3' end seq. 
>FC-IC1688Z.Seq
NNNNNNNNNNTTTTTTTTTTTTTTAGATTATTACAACAATTTGTTTTTTATTATTTATTA
AATAATTTAGAAACATTTTCTGTGAACAATTGATGGACCTGATTCGTCGTATTCTTCTTT
GGAGATCCACATTTGTTGGAAAGTTGAGAGTGAAGCTAAGATAGATCCACCAATCCAGAC
AGAGTATTTACGTTCTGGTGGAGCAATGATTTTAATTTTCATGGTTGATGGGGCTAAAGC
AGTTAATTCTTTGTTCATACGATCAGCAATACCTGGGAACATAGTTGT
Length of 3' end seq. 288
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -