FC-IC1683
Library FC-IC
(Link to library)
Clone ID FC-IC1683
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09353-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>FC-IC1683 (FC-IC1683Q) /CSM/FC-IC/FC-IC1683Q.Seq.d/
ACCAAATGATAAACCATTTGGGAAATATTGAACTGCATTAATATCAGCTTCGTGACCAGT
GAAAGTTTGAACACATTTACCACTACGTAAATCCCATAATTTGGCGGTAGCATCACAAGC
ACCACTGATGAAATAGTTTTTATCTGGTGAAACACTGACACTCATGACATCACCGTTGTG
GTCAGAGAATTCTGTGATCTTTGTXXXXXXXXXX
sequence update 2001.11. 5
Translated Amino Acid sequence
tk**TIWEILNCINISFVTSESLNTFTTT*ip*fggsitsttdeivfiw*ntdthditvv
vrefcdl---


Translated Amino Acid sequence (All Frames)
Frame A:
tk**TIWEILNCINISFVTSESLNTFTTT*ip*fggsitsttdeivfiw*ntdthditvv
vrefcdl---


Frame B:
pndkpfgky*talisas*pvkv*thlplrkshnlavasqaplmk*flsgetltlmtsplw
sensvif---


Frame C:
qminhlgnielh*yqlrdq*kfehiyhyvnpiiwr*hhkhh**nsfylvkh*hs*hhrcg
qril*sl---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-IC1683 (FC-IC1683Q) /CSM/FC-IC/FC-IC1683Q.Seq.d/ 404 e-112
AFJ370 (AFJ370Q) /CSM/AF/AFJ3-C/AFJ370Q.Seq.d/ 404 e-112
VFK342 (VFK342Q) /CSM/VF/VFK3-B/VFK342Q.Seq.d/ 391 e-108
AFK519 (AFK519Q) /CSM/AF/AFK5-A/AFK519Q.Seq.d/ 391 e-108
AFO746 (AFO746Q) /CSM/AF/AFO7-B/AFO746Q.Seq.d/ 349 1e-95
SSD863 (SSD863Q) /CSM/SS/SSD8-C/SSD863Q.Seq.d/ 319 9e-87
AFO321 (AFO321Q) /CSM/AF/AFO3-A/AFO321Q.Seq.d/ 262 2e-69
AFM380 (AFM380Q) /CSM/AF/AFM3-D/AFM380Q.Seq.d/ 204 4e-52
SSD702 (SSD702Q) /CSM/SS/SSD7-A/SSD702Q.Seq.d/ 188 2e-47
SLD136 (SLD136Q) /CSM/SL/SLD1-B/SLD136Q.Seq.d/ 111 4e-24

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X73641|X73641.1 Dictyostelium discoideum gene for G-protein beta-subunit. 404 e-109 1
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 349 7e-98 4
Z75134|Z75134.1 C.familiaris mRNA for rod transducin beta subunit;. 36 0.009 2
AJ536961|AJ536961.1 Canis familiaris EST, clone EST25D6. 36 0.010 2
AL879840|AL879840.1 Xenopus tropicalis EST, clone TEgg019m04 3'. 40 0.010 2
CD467307|CD467307.1 LeukoS1_3_A12.g1_A023 Stimulated peripheral blood leukocytes S1 Equus caballus cDNA clone LeukoS1_3_A12_A023 5', mRNA sequence. 36 0.036 2
AY401713|AY401713.1 Pan troglodytes HCM0982 gene, VIRTUAL TRANSCRIPT, partial sequence, genomic survey sequence. 44 0.16 2
CD269836|CD269836.1 T143A02135F (FHIG:A) Ectomycorrhiza plate culture Betula pendula/Paxillus involutus mixed EST library cDNA 5', mRNA sequence. 42 0.28 2
CD270770|CD270770.1 T143A01691F (FHIG:A) Ectomycorrhiza plate culture Betula pendula/Paxillus involutus mixed EST library cDNA 5', mRNA sequence. 42 0.30 2
BX539349|BX539349.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 30 0.50 8
dna update 2003.12.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P36408) RecName: Full=Guanine nucleotide-binding protein subuni... 145 4e-34
AY661671_1(AY661671|pid:none) Lentinula edodes guanine nucleotid... 110 1e-23
DQ096450_1(DQ096450|pid:none) Cryptococcus gattii strain R265 G-... 110 1e-23
AF536325_1(AF536325|pid:none) Ustilago maydis G-protein beta sub... 108 6e-23
AF091120_1(AF091120|pid:none) Filobasidiella neoformans G-protei... 108 6e-23
DQ863323_1(DQ863323|pid:none) Penicillium marneffei STE4-like pr... 106 2e-22
AF056182_1(AF056182|pid:none) Emericella nidulans G-protein beta... 106 2e-22
AY550249_1(AY550249|pid:none) Paracoccidioides brasiliensis smal... 106 3e-22
AB188197_1(AB188197|pid:none) Botryotinia fuckeliana bcgb1 gene ... 104 8e-22
AY599846_1(AY599846|pid:none) Rhizopus stolonifer G-protein beta... 104 8e-22
protein update 2009. 5.21
PSORT

psg: 0.75 gvh: 0.41 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: endoplasmic reticulum

>> prediction for FC-IC1683 is cyt

5' end seq. ID FC-IC1683F
5' end seq.
>FC-IC1683F.Seq
ACCAAATGATAAACCATTTGGGAAATATTGAACTGCATTAATATCAGCTTCGTGACCAGT
GAAAGTTTGAACACATTTACCACTACGTAAATCCCATAATTTGGCGGTAGCATCACAAGC
ACCACTGATGAAATAGTTTTTATCTGGTGAAACACTGACACTCATGACATCACCGTTGTG
GTCAGAGAATTCTGTGATCTTTGTNNNNNNNNNN
Length of 5' end seq. 214
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -