FC-IC1678
Library FC-IC
(Link to library)
Clone ID FC-IC1678
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16583-1
Original site URL
Representative seq. ID FC-IC1678E
(Link to Original site)
Representative DNA sequence
>FC-IC1678 (FC-IC1678Q) /CSM/FC-IC/FC-IC1678Q.Seq.d/
TACTAAATCATGCTACTATTACGCAAACAATTGACAACAGTAGGGTAAAACTAACCTGTC
TCACGACGGTCTAAACCCAGCTCACGTTCCTTGTTAGTGGGTGAACAATCCAACACTTTG
TGAATTCTGCTTCACAATGATAAGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC
TATGAGCGCTTGGCTGCCACAAGCCAGTTATNCCCTGTGGTAACTTTTCTGACACCTCTA
GGCTTAAGATTTAAGCACATAAAGGATCGATAGGCCCTGGTTTCCCAGTTCCGATTAGT
sequence update 2001.11.10
Translated Amino Acid sequence
y*imlllrkqlttvg*n*pvsrrskpssrsllvgeqsntl*ILLHNDKKSRHRRIKKQRR
YERLAATSQLXPVVTFLTPLGLRFKHIKDR*alvsqfrl


Translated Amino Acid sequence (All Frames)
Frame A:
y*imlllrkqlttvg*n*pvsrrskpssrsllvgeqsntl*ILLHNDKKSRHRRIKKQRR
YERLAATSQLXPVVTFLTPLGLRFKHIKDR*alvsqfrl


Frame B:
tkscyyyann*qq*gktnlshdglnpahvpc*wvnnptlcefcftmirradiegsksnva
msawlpqasyxlw*lf*hl*a*dlst*ridrpwfpssd*


Frame C:
lnhatitqtidnsrvkltclttv*tqltflvsg*tiqhfvnsasq**eeptskdqkatsl
*algchkpvxpcgnfsdtsrlki*ahkgsigpgfpvpis


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-IC1678 (FC-IC1678Q) /CSM/FC-IC/FC-IC1678Q.Seq.d/ 587 e-167
FC-IC1556 (FC-IC1556Q) /CSM/FC-IC/FC-IC1556Q.Seq.d/ 577 e-164
VHC874 (VHC874Q) /CSM/VH/VHC8-D/VHC874Q.Seq.d/ 569 e-162
VHQ477 (VHQ477Q) /CSM/VH/VHQ4-D/VHQ477Q.Seq.d/ 569 e-162
VHQ367 (VHQ367Q) /CSM/VH/VHQ3-C/VHQ367Q.Seq.d/ 569 e-162
VHQ190 (VHQ190Q) /CSM/VH/VHQ1-D/VHQ190Q.Seq.d/ 569 e-162
VHO855 (VHO855Q) /CSM/VH/VHO8-C/VHO855Q.Seq.d/ 569 e-162
VHM596 (VHM596Q) /CSM/VH/VHM5-D/VHM596Q.Seq.d/ 569 e-162
VHL154 (VHL154Q) /CSM/VH/VHL1-C/VHL154Q.Seq.d/ 569 e-162
VHK875 (VHK875Q) /CSM/VH/VHK8-D/VHK875Q.Seq.d/ 569 e-162

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment. 410 0.0 4
AF083031|AF083031.2 Guillardia theta nucleomorph chromosome 3, complete sequence. 297 e-179 6
AJ010592|AJ010592.2 Guillardia theta DNA for complete sequence of nucleomorph chromosome 2. 297 e-179 6
AF165818|AF165818.4 Guillardia theta nucleomorph chromosome 1, complete sequence. 297 e-178 6
AC121240|AC121240.18 Medicago truncatula clone mth1-51o19, WORKING DRAFT SEQUENCE, 12 unordered pieces. 297 e-178 6
AC122172|AC122172.25 Medicago truncatula clone mth2-27e7, WORKING DRAFT SEQUENCE, 18 unordered pieces. 297 e-177 6
AL391737|AL391737.2 chromosome I of strain GB-M1 of Encephalitozoon cuniculi (Microspora). 147 e-115 6
AA660670|AA660670.1 00559 MtRHE Medicago truncatula cDNA 5' similar to 26S rRNA, mRNA sequence. 351 4e-97 2
AJ602619|AJ602619.1 Triticum aestivum EST, clone E03_T06_plate_19. 351 4e-97 2
AY026380|AY026380.1 Salpingoeca infusionum 28S large subunit ribosomal RNA gene, partial sequence. 305 3e-96 3
dna update 2003.12.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU430725_1(EU430725|pid:none) Cupressus sempervirens clone CYPLP... 112 4e-28
AY436773_1(AY436773|pid:none) Pyrus communis putative senescence... 57 1e-12
CP001575_406(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 55 9e-12
AK230153_1(AK230153|pid:none) Arabidopsis thaliana mRNA for hypo... 49 3e-10
EU244380_1(EU244380|pid:none) Haliotis diversicolor clone HDr4CJ... 49 3e-08
BC114377_1(BC114377|pid:none) Homo sapiens cDNA clone MGC:134704... 45 3e-06
EF192058_1(EF192058|pid:none) Trichosanthes dioica clone TDM04 p... 37 5e-05
AL844509_690(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 42 0.009
AP010904_342(AP010904|pid:none) Desulfovibrio magneticus RS-1 DN... 35 0.81
BA000023_1278(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,... 35 0.81
protein update 2009. 7. 2
PSORT

psg: 0.15 gvh: 0.50 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.36 mip: 0.00
nuc: 0.15 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial

>> prediction for FC-IC1678 is nuc

5' end seq. ID FC-IC1678F
5' end seq.
>FC-IC1678F.Seq
TACTAAATCATGCTACTATTACGCAAACAATTGACAACAGTAGGGTAAAACTAACCTGTC
TCACGACGGTCTAAACCCAGCTCACGTTCCTTGTTAGTGGGTGAACAATCCAACACTTTG
TGAATTCTGCTTCACAATGATAAGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC
TATGAGCGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAG
GCTTAAGATTTAAGCACATAAAGGATCGATAGGCCCTGGTTTCCCAGTTCCGATTAGTNN
NNNNNNNN
Length of 5' end seq. 308
3' end seq. ID FC-IC1678Z
3' end seq.
>FC-IC1678Z.Seq
NNNNNNNNNNACTAAATCATGCTACTATTACGCAAACAATTGACAACAGTAGGGTAAAAC
TAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCTTGTTAGTGGGTGAACAATCC
AACACTTTGTGAATTCTGCTTCACAATGATAAGAAGAGCCGACATCGAAGGATCAAAAAG
CAACGTCGCTATGAGCGCTTGGCTGCCACAAGCCAGTTATNCCCTGTGGTAACTTTTCTG
ACACCTCTAGGCTTAAGATTTAAGCACATAAAGGATCGATAGGCCCTGGTTTCCCAGTTC
CGATTAGT
Length of 3' end seq. 308
Connected seq. ID FC-IC1678P
Connected seq.
>FC-IC1678P.Seq
TACTAAATCATGCTACTATTACGCAAACAATTGACAACAGTAGGGTAAAACTAACCTGTC
TCACGACGGTCTAAACCCAGCTCACGTTCCTTGTTAGTGGGTGAACAATCCAACACTTTG
TGAATTCTGCTTCACAATGATAAGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC
TATGAGCGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAG
GCTTAAGATTTAAGCACATAAAGGATCGATAGGCCCTGGTTTCCCAGTTCCGATTAGT--
--------ACTAAATCATGCTACTATTACGCAAACAATTGACAACAGTAGGGTAAAACTA
ACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCTTGTTAGTGGGTGAACAATCCAA
CACTTTGTGAATTCTGCTTCACAATGATAAGAAGAGCCGACATCGAAGGATCAAAAAGCA
ACGTCGCTATGAGCGCTTGGCTGCCACAAGCCAGTTATNCCCTGTGGTAACTTTTCTGAC
ACCTCTAGGCTTAAGATTTAAGCACATAAAGGATCGATAGGCCCTGGTTTCCCAGTTCCG
ATTAGT
Length of connected seq. 596
Full length Seq ID FC-IC1678E
Full length Seq.
>FC-IC1678E.Seq
TACTAAATCATGCTACTATTACGCAAACAATTGACAACAGTAGGGTAAAACTAACCTGTC
TCACGACGGTCTAAACCCAGCTCACGTTCCTTGTTAGTGGGTGAACAATCCAACACTTTG
TGAATTCTGCTTCACAATGATAAGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC
TATGAGCGCTTGGCTGCCACAAGCCAGTTATNCCCTGTGGTAACTTTTCTGACACCTCTA
GGCTTAAGATTTAAGCACATAAAGGATCGATAGGCCCTGGTTTCCCAGTTCCGATTAGT
Length of full length seq. 299