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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1667
Library FC-IC
(Link to library)
Clone ID FC-IC1667
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID FC-IC1667E
(Link to Original site)
Representative DNA sequence 
>FC-IC1667 (FC-IC1667Q) /CSM/FC-IC/FC-IC1667Q.Seq.d/
AACCACCAGNATAAGACGACATTACCGTATAAATCTTTACGGATATCAACATCACATTTC
ATGATGGAGTTATAGGTGGTTTCGTGGATACCAGCTGATTCCATACCTAAGAATGATGGT
TGGAAGAGGGCTTCTGGGCAACGGAAACGTTCATTACCGATGGTGATGACTTGACCGTCT
GGTAATTCGTATGATTTTTCGAGGGCTGATGATGAGGCAGCAGTTTGCATTTCAGCTTCA
AAGTCGAGGGCGACGTAGGCTAATTTTTCTTTGATATCTCTGACGATTTCTCTTTCGGCA
GTGGTGGTGAATGAGTAACCACGTTCAGTTAAGATTTTCATCATGTAATCGGTAAGATCA
CGACCAGCTAAATCTAAACGTAAGATGGCATGTGGTAAAGCATAACCTTCATAGATTGGT
sequence update 2001.11.10
Translated Amino Acid sequence 
ttxirrhyrinlygyqhhis*wsyrwfrgyqlipylrmmvgrgllgngnvhyrw**LDRL
VIRMIFRGLMMRQQFAFQLQSRGRRRLIFL*yl*rflfrqww*msnhvqlrfsscnr*dh
dqlnlnvrwhvvkhnlhrl
Translated Amino Acid sequence (All Frames) 
Frame A:
nhqxkttlpykslristshfmmel*vvswipadsipkndgwkrasgqrkrslpmvmt*ps
gnsydfsraddeaavcisasksrat*anfslisltislsavvvne*prsvkifim*svrs
rpakskrkmacgka*ps*ig


Frame B:
ttxirrhyrinlygyqhhis*wsyrwfrgyqlipylrmmvgrgllgngnvhyrw**LDRL
VIRMIFRGLMMRQQFAFQLQSRGRRRLIFL*yl*rflfrqww*msnhvqlrfsscnr*dh
dqlnlnvrwhvvkhnlhrl


Frame C:
ppx*dditv*iftdinitfhdgviggfvdts*fht*e*wleegfwatetfitdgddltvw
*fv*ffeg***gsslhfsfkvegdvg*fffdisddfsfgsgge*vttfs*dfhhvigkit
ts*i*t*dgmw*sitfidw
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1667 (FC-IC1667Q) /CSM/FC-IC/FC-IC1667Q.Seq.d/                   827   0.0
FC-IC1636 (FC-IC1636Q) /CSM/FC-IC/FC-IC1636Q.Seq.d/                   803   0.0
VFO588 (VFO588Q) /CSM/VF/VFO5-D/VFO588Q.Seq.d/                        789   0.0
VFM814 (VFM814Q) /CSM/VF/VFM8-A/VFM814Q.Seq.d/                        789   0.0
VFM550 (VFM550Q) /CSM/VF/VFM5-C/VFM550Q.Seq.d/                        789   0.0
VFM463 (VFM463Q) /CSM/VF/VFM4-C/VFM463Q.Seq.d/                        789   0.0
VFL880 (VFL880Q) /CSM/VF/VFL8-D/VFL880Q.Seq.d/                        789   0.0
VFL805 (VFL805Q) /CSM/VF/VFL8-A/VFL805Q.Seq.d/                        789   0.0
VFL788 (VFL788Q) /CSM/VF/VFL7-D/VFL788Q.Seq.d/                        789   0.0
VFL749 (VFL749Q) /CSM/VF/VFL7-C/VFL749Q.Seq.d/                        789   0.0
own update 2001.12. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   684   0.0    2
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   607   0.0    3
X03281|X03281.1 Dictyostelium discoideum gene for actin A8.       789   0.0    1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   787   0.0    1
M14146|M14146.1 D.discoideum actin 15 gene, complete cds.         733   0.0    1
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.   733   0.0    1
X03282|X03282.1 dictyostelium discoideum gene for actin A12.      607   e-170  1
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   583   e-163  5
U25660|U25660.1 Dictyostelium discoideum actin gene, partial cds.   500   e-138  1
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   488   e-134  1
dna update 2003.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   272   3e-72
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   272   3e-72
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        272   3e-72
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp...   270   2e-71
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   269   2e-71
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   269   3e-71
EF455784_1(EF455784|pid:none) Hyperamoeba sp. ATCC PRA-39 actin ...   268   3e-71
AY294153_1(AY294153|pid:none) Platyamoeba placida actin mRNA, pa...   268   4e-71
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   268   6e-71
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          267   7e-71
protein update 2009. 7. 2
PSORT 

 psg: 0.69  gvh: 0.49  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.67  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 92.0 %: mitochondrial
	  8.0 %: nuclear

>> prediction for FC-IC1667 is mit
5' end seq. ID FC-IC1667F
5' end seq. 
>FC-IC1667F.Seq
ACCACCAGNATAAGACGACATTACCGTATAAATCTTTACGGATATCAACATCACATTTCA
TGATGGAGTTATAGGTGGTTTCGTGGATACCAGCTGATTCCATACCTAAGAATGATGGTT
GGAAGAGGGCTTCTGGGCAACGGAAACGTTCATTACCGATGGTGATGACTTGACCGTCTG
GTAATTCGTATGATTTTTCGAGGGCTGATGATGAGGCAGCAGTTTGCATTTCAGCTTCAA
AGTCGAGGGCGACGTAGGCTAATTTTTCTTTGATATCTCTGACGATTTCTCTTTCGGCAG
TGGTGGTGAATGAGTAACCACGTTCAGTTAAGATTTTCATCATGTAATCGGTAAGATCAC
GACCAGCTAAATCTAAACGTAAGATGGCATGTGGTAAAGCATAACCTTCATAGATTGGTN
NNNNNNNNN
Length of 5' end seq. 429
3' end seq. ID FC-IC1667Z
3' end seq. 
>FC-IC1667Z.Seq
NNNNNNNNNNACCACCAGATAAGNCGACATTACCGTATAAATCTTTACGGATATCAACAT
CACATTTCATGATGGAGTTATAGGTGGTTTCGTGGATACCAGCTGATTCCATACCTAAGA
ATGATGGTTGGAAGAGGGCTTCTGGGCAACGGAAACGTTCATTACCGATGGTGATGACTT
GACCGTCTGGTAATTCGTATGATTTTTCGAGGGCTGATGATGAGGCAGCAGTTTGCATTT
CAGCTTCAAAGTCGAGGGCGACGTAGGCTAATTTTTCTTTGATATCTCTGACGATTTCTC
TTTCGGCAGTGGTGGTGAATGAGTAACCACGTTCAGTTAAGATTTTCATCATGTAATCGG
TAAGATCACGACCAGCTAAATCTAAACGTAAGATGGCATGTGGTAAAGCATAACCTTCAT
AGATTGGT
Length of 3' end seq. 428
Connected seq. ID FC-IC1667P
Connected seq. 
>FC-IC1667P.Seq
ACCACCAGNATAAGACGACATTACCGTATAAATCTTTACGGATATCAACATCACATTTCA
TGATGGAGTTATAGGTGGTTTCGTGGATACCAGCTGATTCCATACCTAAGAATGATGGTT
GGAAGAGGGCTTCTGGGCAACGGAAACGTTCATTACCGATGGTGATGACTTGACCGTCTG
GTAATTCGTATGATTTTTCGAGGGCTGATGATGAGGCAGCAGTTTGCATTTCAGCTTCAA
AGTCGAGGGCGACGTAGGCTAATTTTTCTTTGATATCTCTGACGATTTCTCTTTCGGCAG
TGGTGGTGAATGAGTAACCACGTTCAGTTAAGATTTTCATCATGTAATCGGTAAGATCAC
GACCAGCTAAATCTAAACGTAAGATGGCATGTGGTAAAGCATAACCTTCATAGATTGGT-
---------ACCACCAGATAAGNCGACATTACCGTATAAATCTTTACGGATATCAACATC
ACATTTCATGATGGAGTTATAGGTGGTTTCGTGGATACCAGCTGATTCCATACCTAAGAA
TGATGGTTGGAAGAGGGCTTCTGGGCAACGGAAACGTTCATTACCGATGGTGATGACTTG
ACCGTCTGGTAATTCGTATGATTTTTCGAGGGCTGATGATGAGGCAGCAGTTTGCATTTC
AGCTTCAAAGTCGAGGGCGACGTAGGCTAATTTTTCTTTGATATCTCTGACGATTTCTCT
TTCGGCAGTGGTGGTGAATGAGTAACCACGTTCAGTTAAGATTTTCATCATGTAATCGGT
AAGATCACGACCAGCTAAATCTAAACGTAAGATGGCATGTGGTAAAGCATAACCTTCATA
GATTGGT
Length of connected seq. 837
Full length Seq ID FC-IC1667E
Full length Seq. 
>FC-IC1667E.Seq
AACCACCAGNATAAGACGACATTACCGTATAAATCTTTACGGATATCAACATCACATTTC
ATGATGGAGTTATAGGTGGTTTCGTGGATACCAGCTGATTCCATACCTAAGAATGATGGT
TGGAAGAGGGCTTCTGGGCAACGGAAACGTTCATTACCGATGGTGATGACTTGACCGTCT
GGTAATTCGTATGATTTTTCGAGGGCTGATGATGAGGCAGCAGTTTGCATTTCAGCTTCA
AAGTCGAGGGCGACGTAGGCTAATTTTTCTTTGATATCTCTGACGATTTCTCTTTCGGCA
GTGGTGGTGAATGAGTAACCACGTTCAGTTAAGATTTTCATCATGTAATCGGTAAGATCA
CGACCAGCTAAATCTAAACGTAAGATGGCATGTGGTAAAGCATAACCTTCATAGATTGGT
Length of full length seq. 420