FC-IC1643
Library FC-IC
(Link to library)
Clone ID FC-IC1643
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10099-1
Original site URL
Representative seq. ID FC-IC1643E
(Link to Original site)
Representative DNA sequence
>FC-IC1643 (FC-IC1643Q) /CSM/FC-IC/FC-IC1643Q.Seq.d/
TACCATAGCATTTATCAACTTTAACTGCCATGCCACTACCTGAACCGCTACCACCACNAC
TTCCAGAACTGCCACCACTTCCAGAACTACCACCGCTACTTCCACTACTTCCACTGCTTC
CACTACTTCCACTGCTACCACTTGAAGCAGTTGATTGACCAGTTTGGGCACCAGTTTGAC
CTGAGGTTTGACCTGAGGTTTGGGT
sequence update 2001.11.10
Translated Amino Acid sequence
yhsiyql*LPCHYLNRYHHXFQNCHHFQNYHRYFHYFHCFHYFHCYHLKQLIDQFGHQFD
LRFDLRFG


Translated Amino Acid sequence (All Frames)
Frame A:
yhsiyql*LPCHYLNRYHHXFQNCHHFQNYHRYFHYFHCFHYFHCYHLKQLIDQFGHQFD
LRFDLRFG


Frame B:
tiafinfnchatt*tattttsrtattsrtttatsttstasttstatt*ss*ltslgtslt
*glt*glg


Frame C:
p*hlstltamplpeplppxlpelpplpelppllpllpllpllpllpleavd*pvwapv*p
ev*pevw


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSF490 (VSF490Q) /CSM/VS/VSF4-D/VSF490Q.Seq.d/ 400 e-111
VSF485 (VSF485Q) /CSM/VS/VSF4-D/VSF485Q.Seq.d/ 400 e-111
FC-IC1643 (FC-IC1643Q) /CSM/FC-IC/FC-IC1643Q.Seq.d/ 400 e-111
FC-IC1479 (FC-IC1479Q) /CSM/FC-IC/FC-IC1479Q.Seq.d/ 398 e-110
FC-IC0930 (FC-IC0930Q) /CSM/FC-IC/FC-IC0930Q.Seq.d/ 398 e-110
FC-IC0470 (FC-IC0470Q) /CSM/FC-IC/FC-IC0470Q.Seq.d/ 398 e-110
FC-IC0339 (FC-IC0339Q) /CSM/FC-IC/FC-IC0339Q.Seq.d/ 398 e-110
FC-IC0322 (FC-IC0322Q) /CSM/FC-IC/FC-IC0322Q.Seq.d/ 385 e-106
FC-IC1660 (FC-IC1660Q) /CSM/FC-IC/FC-IC1660Q.Seq.d/ 369 e-101
VHN137 (VHN137Q) /CSM/VH/VHN1-B/VHN137Q.Seq.d/ 44 8e-04

own update 2002.10. 7
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CB036727|CB036727.1 Tc_ad2_25D04_TEXF1 Teladorsagia circumcincta adults library 2 Teladorsagia circumcincta cDNA clone Tc_ad2_25D04 5', mRNA sequence. 60 4e-09 2
AC126494|AC126494.3 Rattus norvegicus clone CH230-395A13, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 56 2e-04 1
AC109023|AC109023.4 Rattus norvegicus clone CH230-273D21, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 56 2e-04 1
CB066151|CB066151.1 PVBE10B07.E PvBEcDNA Plasmodium vivax cDNA clone PVBE10B07.E, mRNA sequence. 54 7e-04 1
CB851447|CB851447.1 UI-CF-DU1-adt-g-24-0-UI.s1 UI-CF-DU1 Homo sapiens cDNA clone UI-CF-DU1-adt-g-24-0-UI 3', mRNA sequence. 50 0.011 1
CF589304|CF589304.1 AGENCOURT_15703765 NICHD_XGC_Swb1N Silurana tropicalis cDNA clone IMAGE:7021775 5', mRNA sequence. 50 0.011 1
AL772400|AL772400.3 Human DNA sequence from clone RP11-540N4 on chromosome X. 46 0.17 1
AC080152|AC080152.1 Homo sapiens chromosome 12 clone RP11-689M18 map 12, LOW-PASS SEQUENCE SAMPLING. 46 0.17 1
BI031540|BI031540.1 PM0-MT0433-060401-004-a12 MT0433 Homo sapiens cDNA, mRNA sequence. 46 0.17 1
CF592107|CF592107.1 AGENCOURT_15662831 NICHD_XGC_Swb1N Silurana tropicalis cDNA clone IMAGE:7024664 5', mRNA sequence. 46 0.17 1
dna update 2003.12.11
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 99,239,115
protein update 2009. 7. 2
PSORT

psg: 0.70 gvh: 0.23 alm: 0.59 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: mitochondrial
24.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for FC-IC1643 is nuc

5' end seq. ID FC-IC1643F
5' end seq.
>FC-IC1643F.Seq
TACCATAGCATTTATCAACTTTAACTGCCATGCCACTACCTGAACCGCTACCACCACCAC
TTCCAGAACTGCCACCACTTCCAGAACTACCACCGCTACTTCCACTACTTCCACTGCTTC
CACTACTTCCACTGCTACCACTTGAAGCAGTTGATTGACCAGTTTGGGCACCAGTTTGAC
CTGAGGTTTGACCTGAGGTTTGGGTNNNNNNNNNN
Length of 5' end seq. 215
3' end seq. ID FC-IC1643Z
3' end seq.
>FC-IC1643Z.Seq
NNNNNNNNNNACCATAGCATTTATCAACTTTAACTGCCATGCCACTACCTGAACCGCTAC
CACCANTACTTCCAGAACTGCCACCACTTCCAGAACTACCACCGCTACTTCCACTACTTC
CACTGCTTCCACTACTTCCACTGCTACCACTTGAAGCAGTTGATTGACCAGTTTGGGCAC
CAGTTTGACCTGAGGTTTGACCTGAGGTTTGGGT
Length of 3' end seq. 214
Connected seq. ID FC-IC1643P
Connected seq.
>FC-IC1643P.Seq
TACCATAGCATTTATCAACTTTAACTGCCATGCCACTACCTGAACCGCTACCACCACCAC
TTCCAGAACTGCCACCACTTCCAGAACTACCACCGCTACTTCCACTACTTCCACTGCTTC
CACTACTTCCACTGCTACCACTTGAAGCAGTTGATTGACCAGTTTGGGCACCAGTTTGAC
CTGAGGTTTGACCTGAGGTTTGGGT----------ACCATAGCATTTATCAACTTTAACT
GCCATGCCACTACCTGAACCGCTACCACCANTACTTCCAGAACTGCCACCACTTCCAGAA
CTACCACCGCTACTTCCACTACTTCCACTGCTTCCACTACTTCCACTGCTACCACTTGAA
GCAGTTGATTGACCAGTTTGGGCACCAGTTTGACCTGAGGTTTGACCTGAGGTTTGGGT
Length of connected seq. 409
Full length Seq ID FC-IC1643E
Full length Seq.
>FC-IC1643E.Seq
TACCATAGCATTTATCAACTTTAACTGCCATGCCACTACCTGAACCGCTACCACCACNAC
TTCCAGAACTGCCACCACTTCCAGAACTACCACCGCTACTTCCACTACTTCCACTGCTTC
CACTACTTCCACTGCTACCACTTGAAGCAGTTGATTGACCAGTTTGGGCACCAGTTTGAC
CTGAGGTTTGACCTGAGGTTTGGGT
Length of full length seq. 205