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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1624
Library FC-IC
(Link to library)
Clone ID FC-IC1624
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>FC-IC1624 (FC-IC1624Q) /CSM/FC-IC/FC-IC1624Q.Seq.d/
XXXXXXXXXXCAAAACCAACAACNCCAGCCCCAACAACACCAGCCCCAACATCAACTCTT
ACAGTAGATTGGACTTCATACCAAACTCCAATAAGAGATCAAGGACAATGCGGATCATGT
TGGGCATTTGCTAGTAGTGCAGCACTTGAATNCTCGTTACCTTATTAAATATGGTA
sequence update 2001.11. 5
Translated Amino Acid sequence 
---KPTTPAPTTPAPTSTLTVDWTSYQTPIRDQGQCGSCWAFASSAALEXSLPY*iw
Translated Amino Acid sequence (All Frames) 
Frame A:
---ktnnxspnntspninsysrldfipnsnkrsrtmrimlgic**cst*xlvtllnmv


Frame B:
---KPTTPAPTTPAPTSTLTVDWTSYQTPIRDQGQCGSCWAFASSAALEXSLPY*iw


Frame C:
---nqqxqpqqhqpqhqllq*iglhtklq*eikdnadhvghllvvqhlnxrylikyg
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1624 (FC-IC1624Q) /CSM/FC-IC/FC-IC1624Q.Seq.d/                   317   3e-86
FC-IC1568 (FC-IC1568Q) /CSM/FC-IC/FC-IC1568Q.Seq.d/                   317   3e-86
FC-IC1649 (FC-IC1649Q) /CSM/FC-IC/FC-IC1649Q.Seq.d/                   315   1e-85
FC-IC0309 (FC-IC0309Q) /CSM/FC-IC/FC-IC0309Q.Seq.d/                   309   7e-84
FC-IC0308 (FC-IC0308Q) /CSM/FC-IC/FC-IC0308Q.Seq.d/                   309   7e-84
FC-IC1760 (FC-IC1760Q) /CSM/FC-IC/FC-IC1760Q.Seq.d/                   305   1e-82
FC-IC1748 (FC-IC1748Q) /CSM/FC-IC/FC-IC1748Q.Seq.d/                   305   1e-82
FC-IC1665 (FC-IC1665Q) /CSM/FC-IC/FC-IC1665Q.Seq.d/                   305   1e-82
FC-IC1648 (FC-IC1648Q) /CSM/FC-IC/FC-IC1648Q.Seq.d/                   305   1e-82
FC-IC1642 (FC-IC1642Q) /CSM/FC-IC/FC-IC1642Q.Seq.d/                   305   1e-82
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB088483|AB088483.1 Dictyostelium discoideum gene for gamete and mating-type specific protein A, complete cds.   188   2e-70  3
AZ686636|AZ686636.1 ENTFZ42TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    60   2e-06  2
BH165563|BH165563.1 ENTSB84TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    60   2e-06  2
M94163|M94163.1 Entamoeba histolytica (clone gEh-CPp2) cysteine proteinase (CPp2) gene, complete cds.    60   3e-06  2
U28755|U28755.1 Entamoeba invadens cysteine proteinase gene, partial cds.    60   1e-05  1
AZ535019|AZ535019.1 ENTBP24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    58   4e-05  1
S58670|S58670.1 ACP2=cysteine proteinase [Entamoeba histolytica, HM-1, Genomic/mRNA, 933 nt].    52   5e-04  2
CD451153|CD451153.1 USDA-FP_103216 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-42_H04 5', mRNA sequence.    52   0.002  1
CB402204|CB402204.1 OSTF208E2_1 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence.    48   0.037  1
AV201503|AV201503.1 Caenorhabditis elegans cDNA clone:yk388h3 : 5' end, single read.    48   0.037  1
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB088483_1(AB088483|pid:none) Dictyostelium discoideum gmsA gene...    63   2e-09
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...    45   6e-04
BC080004_1(BC080004|pid:none) Xenopus laevis MGC81823 protein, m...    45   7e-04
AX497240_1(AX497240|pid:none) Sequence 7 from Patent WO0229058.        44   0.001
(Q5E998) RecName: Full=Cathepsin L2;          EC=3.4.22.43; Flag...    44   0.002
FJ807676_1(FJ807676|pid:none) Dicentrarchus labrax cathepsin L m...    44   0.002
AB017648_1(AB017648|pid:none) Bos taurus gene for preprocathepsi...    44   0.002
BC074718_1(BC074718|pid:none) Xenopus tropicalis MGC69486 protei...    44   0.002
DQ152935_1(DQ152935|pid:none) Ovis aries cathepsin L2 (CTSL2) mR...    44   0.002
(P25975) RecName: Full=Cathepsin L1;          EC=3.4.22.15; Cont...    44   0.002
protein update 2009. 5.21
PSORT 

 psg: 0.87  gvh: 0.49  alm: 0.47  top: 0.33  tms: 0.00  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for FC-IC1624 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-IC1624Z
3' end seq. 
>FC-IC1624Z.Seq
NNNNNNNNNNCAAAACCAACAACNCCAGCCCCAACAACACCAGCCCCAACATCAACTCTT
ACAGTAGATTGGACTTCATACCAAACTCCAATAAGAGATCAAGGACAATGCGGATCATGT
TGGGCATTTGCTAGTAGTGCAGCACTTGAATNCTCGTTACCTTATTAAATATGGTA
Length of 3' end seq. 176
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -