FC-IC1600
Library FC-IC
(Link to library)
Clone ID FC-IC1600
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16271-1
Original site URL
Representative seq. ID FC-IC1600E
(Link to Original site)
Representative DNA sequence
>FC-IC1600 (FC-IC1600Q) /CSM/FC-IC/FC-IC1600Q.Seq.d/
ACCATTACAGNAATTGACCAAATGGNACATTGACCATCGTTAGAACAAATAACGTGTGGT
TTCAATGAGCAAATCTCTTCATTACATGTTAAACCATTACCACATTGGTAGTCTGAATTA
CAACTTTCACCAAAACCTAAATAATCTGGCATAGCACAAGTTTGTAAATTACCTTTGGTG
GTTGTAACAGAACGACATGCGAATGGTTCTGCACATTCTGTGAATGGGGTGCCACAAGTT
TCTCCTAAACCACTTAATTTAGT
sequence update 2001.11.10
Translated Amino Acid sequence
titxidqmxh*psleqitcgfneqisslhvkplphw*selqlspkpk*SGIAQVCKLPLV
VVTERHANGSAHSVNGVPQVSPKPLNL


Translated Amino Acid sequence (All Frames)
Frame A:
titxidqmxh*psleqitcgfneqisslhvkplphw*selqlspkpk*SGIAQVCKLPLV
VVTERHANGSAHSVNGVPQVSPKPLNL


Frame B:
plqxltkwxidhr*nk*rvvsmskslhymlnhyhigslnynfhqnlnnla*hkfvnylww
l*qndmrmvlhil*mgchkfllnhli*


Frame C:
hyxn*pngtltivrtnnvwfq*anlfitc*tittlvv*ittftkt*iiwhstsl*itfgg
cnrttcewfctfcewgatsfs*tt*fs


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-IC1600 (FC-IC1600Q) /CSM/FC-IC/FC-IC1600Q.Seq.d/ 509 e-144
FC-IC1555 (FC-IC1555Q) /CSM/FC-IC/FC-IC1555Q.Seq.d/ 509 e-144
FC-IC1758 (FC-IC1758Q) /CSM/FC-IC/FC-IC1758Q.Seq.d/ 490 e-138
FC-IC1685 (FC-IC1685Q) /CSM/FC-IC/FC-IC1685Q.Seq.d/ 490 e-138
FC-IC1502 (FC-IC1502Q) /CSM/FC-IC/FC-IC1502Q.Seq.d/ 490 e-138
FC-IC1367 (FC-IC1367Q) /CSM/FC-IC/FC-IC1367Q.Seq.d/ 490 e-138
FC-IC1366 (FC-IC1366Q) /CSM/FC-IC/FC-IC1366Q.Seq.d/ 490 e-138
FC-IC1304 (FC-IC1304Q) /CSM/FC-IC/FC-IC1304Q.Seq.d/ 490 e-138
FC-IC1238 (FC-IC1238Q) /CSM/FC-IC/FC-IC1238Q.Seq.d/ 490 e-138
FC-IC1210 (FC-IC1210Q) /CSM/FC-IC/FC-IC1210Q.Seq.d/ 490 e-138

own update 2001.11.19
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AB079606|AB079606.1 Dictyostelium discoideum Dd-gdcA gene, complete cds. 470 e-131 2
AB079253|AB079253.1 Dictyostelium discoideum Dd-gdcA mRNA, complete cds. 470 e-131 2
AB022216|AB022216.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGD8. 42 0.17 3
BW184756|BW184756.1 Ciona intestinalis cDNA, clone:rciht030h24, 3' end, single read. 34 0.60 2
AV839321|AV839321.1 Ciona intestinalis cDNA, clone:rciad02i09, 3' end, single read. 34 0.62 2
BW167829|BW167829.1 Ciona intestinalis cDNA, clone:rcinc016p13, 3' end, single read. 34 0.65 2
AC068099|AC068099.3 Homo sapiens clone RP11-474F16, LOW-PASS SEQUENCE SAMPLING. 36 1.7 2
AC108532|AC108532.6 Rattus norvegicus clone CH230-91F12, WORKING DRAFT SEQUENCE, 2 unordered pieces. 36 3.5 3
BZ979340|BZ979340.1 PUGDZ24TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa362D24, DNA sequence. 40 14 1
BQ476467|BQ476467.1 curculio5c11.b Curculio glandium cDNA Curculio glandium cDNA clone curculio5c11 5', mRNA sequence. 40 14 1
dna update 2003.12.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB079253_1(AB079253|pid:none) Dictyostelium discoideum Dd-gdcA m... 178 6e-44
(Q52085) RecName: Full=Cell-cell adhesion glycoprotein 64; ... 45 0.001
AP007166_483(AP007166|pid:none) Aspergillus oryzae RIB40 genomic... 40 0.019
AP007166_484(AP007166|pid:none) Aspergillus oryzae RIB40 genomic... 37 0.16
BC104354_1(BC104354|pid:none) Mus musculus predicted gene, ENSMU... 37 0.16
BC104355_1(BC104355|pid:none) Mus musculus keratin associated pr... 37 0.22
AB159785_1(AB159785|pid:none) Aspergillus oryzae csnC gene for c... 36 0.48
AB001327_1(AB001327|pid:none) Halocynthia roretzi mRNA for HrNot... 35 0.63
BC095744_1(BC095744|pid:none) Danio rerio integrin, beta-like 1,... 34 1.4
AY810079_1(AY810079|pid:none) Schistosoma japonicum SJCHGC09392 ... 34 1.8
protein update 2009. 7. 2
PSORT

psg: 0.82 gvh: 0.47 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for FC-IC1600 is cyt

5' end seq. ID FC-IC1600F
5' end seq.
>FC-IC1600F.Seq
ACCATTACAGNAATTGACCAAATGGNACATTGACCATCGTTAGAACAAATAACGTGTGGT
TTCAATGAGCAAATCTCTTCATTACATGTTAAACCATTACCACATTGGTAGTCTGAATTA
CAACTTTCACCAAAACCTAAATAATCTGGCATAGCACAAGTTTGTAAATTACCTTTGGTG
GTTGTAACAGAACGACATGCGAATGGTTCTGCACATTCTGTGAATGGGGTGCCACAAGTT
TCTCCTAAACCACTTAATTTAGTNNNNNNNNNN
Length of 5' end seq. 273
3' end seq. ID FC-IC1600Z
3' end seq.
>FC-IC1600Z.Seq
NNNNNNNNNNACCATNACAGAATTGACCAAATGGACATTGACCATCGTTAGAACAAATAA
CGTGTGGTTTCAATGAGCAAATCTCTTCATTACATGTTAAACCATTACCACATTGGTAGT
CTGAATTACAACTTTCACCAAAACCTAAATAATCTGGCATAGCACAAGTTTGTAAATTAC
CTTTGGTGGTTGTAACAGAACGACATGCGAATGGTTCTGCACATTCTGTGAATGGGGTGC
CACAAGTTTCTCCTAAACCACTTAATTTAGT
Length of 3' end seq. 271
Connected seq. ID FC-IC1600P
Connected seq.
>FC-IC1600P.Seq
ACCATTACAGNAATTGACCAAATGGNACATTGACCATCGTTAGAACAAATAACGTGTGGT
TTCAATGAGCAAATCTCTTCATTACATGTTAAACCATTACCACATTGGTAGTCTGAATTA
CAACTTTCACCAAAACCTAAATAATCTGGCATAGCACAAGTTTGTAAATTACCTTTGGTG
GTTGTAACAGAACGACATGCGAATGGTTCTGCACATTCTGTGAATGGGGTGCCACAAGTT
TCTCCTAAACCACTTAATTTAGT----------ACCATNACAGAATTGACCAAATGGACA
TTGACCATCGTTAGAACAAATAACGTGTGGTTTCAATGAGCAAATCTCTTCATTACATGT
TAAACCATTACCACATTGGTAGTCTGAATTACAACTTTCACCAAAACCTAAATAATCTGG
CATAGCACAAGTTTGTAAATTACCTTTGGTGGTTGTAACAGAACGACATGCGAATGGTTC
TGCACATTCTGTGAATGGGGTGCCACAAGTTTCTCCTAAACCACTTAATTTAGT
Length of connected seq. 524
Full length Seq ID FC-IC1600E
Full length Seq.
>FC-IC1600E.Seq
ACCATTACAGNAATTGACCAAATGGNACATTGACCATCGTTAGAACAAATAACGTGTGGT
TTCAATGAGCAAATCTCTTCATTACATGTTAAACCATTACCACATTGGTAGTCTGAATTA
CAACTTTCACCAAAACCTAAATAATCTGGCATAGCACAAGTTTGTAAATTACCTTTGGTG
GTTGTAACAGAACGACATGCGAATGGTTCTGCACATTCTGTGAATGGGGTGCCACAAGTT
TCTCCTAAACCACTTAATTTAGT
Length of full length seq. 263