>FC-IC1585 (FC-IC1585Q) /CSM/FC-IC/FC-IC1585Q.Seq.d/
XXXXXXXXXXATTTGTTTTTTTTTTAAAAAGAATTTTTTTTTTAAAGACCCTTTATTTTA
TTGATATTTAAAAAAAAGTGAGAGTCTCGCTAACTATTAAAGAGCTTAGATCTTTGATTT
GGCTAAACTTTCTTTGGCTTCAGCTTTTTGACGTTTGGCTAAGATAGCACGAGCTGGACC
AGATAAAGTGTTACCACCCCAGGTCTTTCTGTGTTCACTGTNATTGTTGAACATTTGTTT
GGCGGATTCAACTAATAAAGCGAGTTCGTTTGAGTCAGCAGAGTTGACACCAGTGAGGGC
AACACATGAAGCGTTTCTCATGTGAACTAATTCACCTAATCTGGATTTAGATTTGACGAT
ACAGTATGGGACATCCATACGTCTGCAGAGGGTTGGTAAGTATAAGACGAGTTCAACTGG
GTCAACATCGTGGGCAATGACGACTAATTTAGCTTTCTTCTTTTCGATTAATTTGGTGAC
AGAGTCAATACCGAAACGTAAGTGTTGGACTGGTTTTTCAGCTTTTGGAGCAGCTTGACC
TTTTGGAGTGGCAGCACGGGCTTCAGCGATTTTCAATAATCTAGCTTTCTTGACTGAGGC
TTCTTCTGGTCTGTATTTATCTAATAATTTGAATAAATGGACAGCGGTGTTTTTGTCAAA
GACACGGGTGAATTGGTTGATTGTTGGTGGAACCTTTAATCTCTTTAATAAAACACGTNC
TTTGTCTTTGTAATTTGATGTATCTTGGCCAGTGAGTGAAATGAGTTAAATCTCTCTTTG
GTTGAACACCGAAACCAGT

---cfffkknfffkdplfy*ylkkseslany*ra*ifdlaklslasaf*rlakiaragpd
kvlppqvflcslxllnicladstnkassfesaeltpvratheaflm*TNSPNLDLDLTIQ
YGTSIRLQRVGKYKTSSTGSTSWAMTTNLAFFFSINLVTESIPKRKCWTGFSAFGAA*pf
gvaarasaifnnlaflteassglylsnnlnkwtavflsktrvnwlivggtfnlfnktrxl
sl*fdvswpvsems*islwlntets

Frame A:
---fvfflkrifflktlyfidi*kkvrvsltikelrsliwlnflwlqlfdvwlr*heldq
ikcyhprsfcvhcxc*tfvwriqlikrvrlsqqs*hq*gqhmkrfscelihliwi*i*ry
smghpyvcrglvsirrvqlgqhrgq*rli*lssfrliw*qsqyrnvsvglvfqlleqldl
lewqhglqrfsii*ls*lrlllvciylii*ingqrcfcqrhg*ig*llveplislikhvl
clcnlmylgq*vk*vkslfg*tpkp


Frame B:
---lfff*kefff*rpfillifkkk*esr*llksldl*fg*tffgfsfltfg*dstswtr
*svttpglsvftvivehlfggfn**sefv*vsrvdtsegnt*svshvn*ft*sgfrfddt
vwdihtsaegw*v*defnwvnivgndd*fsfllfd*fgdrvntet*vldwffsfwssltf
wsgstgfsdfq*ssfld*gffwsvfi**fe*mdsgvfvkdtgelvdcwwnl*sl**ntxf
vfvi*cilase*nelnlslvehrnq


Frame C:
---cfffkknfffkdplfy*ylkkseslany*ra*ifdlaklslasaf*rlakiaragpd
kvlppqvflcslxllnicladstnkassfesaeltpvratheaflm*TNSPNLDLDLTIQ
YGTSIRLQRVGKYKTSSTGSTSWAMTTNLAFFFSINLVTESIPKRKCWTGFSAFGAA*pf
gvaarasaifnnlaflteassglylsnnlnkwtavflsktrvnwlivggtfnlfnktrxl
sl*fdvswpvsems*islwlntets

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1585 (FC-IC1585Q) /CSM/FC-IC/FC-IC1585Q.Seq.d/                  1439   0.0
FC-187 (FC-187Q) /CSM/CG/CG-FC/FC-187Q.Seq.d/                        1396   0.0
VSF364 (VSF364Q) /CSM/VS/VSF3-C/VSF364Q.Seq.d/                       1390   0.0
VHC562 (VHC562Q) /CSM/VH/VHC5-C/VHC562Q.Seq.d/                       1388   0.0
VSJ540 (VSJ540Q) /CSM/VS/VSJ5-B/VSJ540Q.Seq.d/                       1368   0.0
FC-IC1346 (FC-IC1346Q) /CSM/FC-IC/FC-IC1346Q.Seq.d/                  1368   0.0
VSG491 (VSG491Q) /CSM/VS/VSG4-D/VSG491Q.Seq.d/                       1354   0.0
FC-BA22 (FC-BA22Q) /CSM/FC/FC-BA/FC-BA22Q.Seq.d/                     1348   0.0
VSI829 (VSI829Q) /CSM/VS/VSI8-B/VSI829Q.Seq.d/                       1322   0.0
FC-AK02 (FC-AK02Q) /CSM/FC/FC-AK/FC-AK02Q.Seq.d/                     1259   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.   628   0.0    5
BQ476680|BQ476680.1 curculio4h01.g Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 3', mRNA sequence.    54   3e-08  3
BQ476431|BQ476431.1 curculio4h01.b Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 5', mRNA sequence.    54   3e-06  2
BQ623728|BQ623728.1 USDA-FP_00819 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00819 5', mRNA sequence.    56   3e-05  2
CA755632| (Y15171) ribosomal protein L7a [Takifugu rubripes], mRNA sequence.    60   5e-05  1
CA845440|CA845440.1 hab99h11.y1 Fugu hgmpD adult gut Takifugu rubripes cDNA clone IMAGE:6356972 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46   0.001  2
Y15171|Y15171.1 Fugu rubripes surf3 and surf6 genes and partial surf1 gene.    46   0.002  3
CA330639|CA330639.1 hab08d06.y1 Fugu hgmpJ adult kidney Takifugu rubripes cDNA clone 6362938 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46   0.002  2
CA846589|CA846589.1 hab83c10.y1 Fugu hgmpC adult gill Takifugu rubripes cDNA clone IMAGE:6355194 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46   0.002  2
CA330747|CA330747.1 haa65h09.y2 Fugu hgmpF adult brain Takifugu rubripes cDNA clone 6358888 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46   0.002  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ZD1) RecName: Full=60S ribosomal protein L7a;                     355   e-110
AY769275_1(AY769275|pid:none) Bombyx mori ribosomal protein L7A ...   186   3e-52
DQ440224_1(DQ440224|pid:none) Aedes aegypti clone AET-254 riboso...   182   5e-51
EU934303_1(EU934303|pid:none) TSA: Anopheles darlingi AD-165 60S...   180   6e-51
BC076693_1(BC076693|pid:none) Xenopus tropicalis hypothetical pr...   176   1e-50
BC118908_1(BC118908|pid:none) Xenopus tropicalis hypothetical pr...   176   1e-50
(Q2TBQ5) RecName: Full=60S ribosomal protein L7a;  &BC109810_1(B...   176   2e-50
BC052339_1(BC052339|pid:none) Mus musculus ribosomal protein L7A...   175   2e-50
BC122243_1(BC122243|pid:none) Danio rerio zgc:153325, mRNA (cDNA...   179   2e-50
BC059533_1(BC059533|pid:none) Danio rerio ribosomal protein L7a,...   175   3e-50

 psg: 0.75  gvh: 0.53  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.09  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: Golgi
	  4.0 %: mitochondrial

>> prediction for FC-IC1585 is nuc

>FC-IC1585Z.Seq
NNNNNNNNNNATTTGTTTTTTTTTTAAAAAGAATTTTTTTTTTAAAGACCCTTTATTTTA
TTGATATTTAAAAAAAAGTGAGAGTCTCGCTAACTATTAAAGAGCTTAGATCTTTGATTT
GGCTAAACTTTCTTTGGCTTCAGCTTTTTGACGTTTGGCTAAGATAGCACGAGCTGGACC
AGATAAAGTGTTACCACCCCAGGTCTTTCTGTGTTCACTGTNATTGTTGAACATTTGTTT
GGCGGATTCAACTAATAAAGCGAGTTCGTTTGAGTCAGCAGAGTTGACACCAGTGAGGGC
AACACATGAAGCGTTTCTCATGTGAACTAATTCACCTAATCTGGATTTAGATTTGACGAT
ACAGTATGGGACATCCATACGTCTGCAGAGGGTTGGTAAGTATAAGACGAGTTCAACTGG
GTCAACATCGTGGGCAATGACGACTAATTTAGCTTTCTTCTTTTCGATTAATTTGGTGAC
AGAGTCAATACCGAAACGTAAGTGTTGGACTGGTTTTTCAGCTTTTGGAGCAGCTTGACC
TTTTGGAGTGGCAGCACGGGCTTCAGCGATTTTCAATAATCTAGCTTTCTTGACTGAGGC
TTCTTCTGGTCTGTATTTATCTAATAATTTGAATAAATGGACAGCGGTGTTTTTGTCAAA
GACACGGGTGAATTGGTTGATTGTTGGTGGAACCTTTAATCTCTTTAATAAAACACGTNC
TTTGTCTTTGTAATTTGATGTATCTTGGCCAGTGAGTGAAATGAGTTAAATCTCTCTTTG
GTTGAACACCGAAACCAGT