FC-IC1569
Library FC-IC
(Link to library)
Clone ID FC-IC1569
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16026-1
Original site URL
Representative seq. ID FC-IC1569E
(Link to Original site)
Representative DNA sequence
>FC-IC1569 (FC-IC1569Q) /CSM/FC-IC/FC-IC1569Q.Seq.d/
ACANAAANAANTTGNTTTCTTTTTTTTTTTTTTTTCTTTTCTTTTCTTTTTTTCCCAATT
ATAATAAATNCAAATAAAAAAACTTTTTACAGTTTGATAATTGAATATAAATGAANATGG
ATGGAGAGAAAAAAAAATNCNCTNTTAAAAACAAATCACCTATTTTTTGGCAGCGACTTT
CTTACTTGGAGCTTTTTTAGCAGCTGGCTTCTTACTAACTGCTTTGGTTACTTTAGCAGA
GTTCTTTTTAGCAGCGGCAGTTTTGGTTGAGGTTGAAGCAGCTTTAGCAGCTGGTTTCTT
TGGTGCAGCTTTTTTGGTTGGAGTAGCTGGTGGAGCGGCAGTTGTTTCAGTTGAAGTAGC
GGTAGTCTTGGCTTTTGGTTTCTTTGCAACTGGACCAAGAGTGGCTTGGTGTTCCTTTTT
ACCTTCTTCTGATAATTTGTAACTGGCTTTGACCATTGTAAGAGT
sequence update 2001.11.10
Translated Amino Acid sequence
xkxxxffffffsflfffsql**xqikklftv**lninexgwrekkxxx*KQITYFLAATF
LLGAFLAAGFLLTALVTLAEFFLAAAVLVEVEAALAAGFFGAAFLVGVAGGAAVVSVEVA
VVLAFGFFATGPRVAWCSFLPSSDNL*laltivr


Translated Amino Acid sequence (All Frames)
Frame A:
txxxxflffffffsflffpiiinxnkktfysliieyk*xwmerkknxllktnhlffgsdf
ltwsffsswlltncfgyfsrvlfssgsfg*g*ssfsswflwcsffgwsswwsgscfs*ss
gslgfwflcnwtksglvflftff**fvtgfdhcks


Frame B:
xkxxxffffffsflfffsql**xqikklftv**lninexgwrekkxxx*KQITYFLAATF
LLGAFLAAGFLLTALVTLAEFFLAAAVLVEVEAALAAGFFGAAFLVGVAGGAAVVSVEVA
VVLAFGFFATGPRVAWCSFLPSSDNL*laltivr


Frame C:
xxxlxsffffflffsffpnynkxk*knflqfdn*i*mxmdgekkkxxxknkspifwqrls
ylelf*qlasy*llwll*qssf*qrqfwlrlkql*qlvslvqlfwle*lverqlfqlk*r
*swllvslqldqewlgvpfyllliicnwl*pl*e


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-IC1569 (FC-IC1569Q) /CSM/FC-IC/FC-IC1569Q.Seq.d/ 692 0.0
SLG855 (SLG855Q) /CSM/SL/SLG8-C/SLG855Q.Seq.d/ 686 0.0
FC-IC0983 (FC-IC0983Q) /CSM/FC-IC/FC-IC0983Q.Seq.d/ 678 0.0
SSM820 (SSM820Q) /CSM/SS/SSM8-A/SSM820Q.Seq.d/ 636 0.0
SSM145 (SSM145Q) /CSM/SS/SSM1-B/SSM145Q.Seq.d/ 636 0.0
SSK811 (SSK811Q) /CSM/SS/SSK8-A/SSK811Q.Seq.d/ 636 0.0
SSJ583 (SSJ583Q) /CSM/SS/SSJ5-D/SSJ583Q.Seq.d/ 636 0.0
SSF687 (SSF687Q) /CSM/SS/SSF6-D/SSF687Q.Seq.d/ 636 0.0
SSF316 (SSF316Q) /CSM/SS/SSF3-A/SSF316Q.Seq.d/ 636 0.0
SSE804 (SSE804Q) /CSM/SS/SSE8-A/SSE804Q.Seq.d/ 636 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U50904|U50904.2 Dictyostelium discoideum histone H1 mRNA, complete cds. 636 0.0 3
L33457|L33457.1 Dictyostelium discoideum (clone pBSK/HMG/ECO-XHO) histone H1 gene, complete cds. 628 e-176 1
AF002682|AF002682.1 Chironomus thummi thummi histone H1-II-2 gene, partial cds. 34 0.020 3
CD825003|CD825003.1 BN25.059G24F011129 BN25 Brassica napus cDNA clone BN25059G24, mRNA sequence. 38 0.55 2
AF002683|AF002683.1 Chironomus tentans histone H1d gene, complete cds. 32 0.68 3
L29104|L29104.1 Glyptotendipes salinus histone H1-I gene, complete cds. 36 0.70 2
AU283019|AU283019.1 Molgula tectiformis mRNA, clone:MT02A1F09R, 5' end. 34 1.2 2
AU283006|AU283006.1 Molgula tectiformis mRNA, clone:MT02A1D10R, 5' end. 34 1.3 2
AU282991|AU282991.1 Molgula tectiformis mRNA, clone:MT02A1B10R, 5' end. 34 1.3 2
BQ916628|BQ916628.1 QHB18I07.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB18I07, mRNA sequence. 30 1.4 3
dna update 2003.12.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54671) RecName: Full=Histone H1; &L33457_1(L33457|pid:none) &... 50 2e-05
CR933357_1(CR933357|pid:none) Mini antigen, Paramecium tetraurel... 35 0.62
AB098524_1(AB098524|pid:none) Petunia x hybrida mRNA for PHCLF2,... 32 8.9

protein update 2009. 3. 1
PSORT

psg: 0.96 gvh: 0.62 alm: 0.22 top: 0.20 tms: 0.20 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: endoplasmic reticulum
28.0 %: mitochondrial
16.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: vacuolar
4.0 %: Golgi
4.0 %: nuclear
4.0 %: vesicles of secretory system

>> prediction for FC-IC1569 is end

5' end seq. ID FC-IC1569F
5' end seq.
>FC-IC1569F.Seq
TACATAAATAATTTGTTTTCTTTTTTTTTTTTTTTTCTTTTCTTTTCTTTTTTTCCCAAT
TNTAATAAATCCAAATAAAAAAACTTTTTACAGTTNGATAATTGAATNTAAATGAAAATG
GATGGANAGAAAAAAAAATCCCCTTTTAAAANCAAATCNCCTNNNNNNNNNN
Length of 5' end seq. 172
3' end seq. ID FC-IC1569Z
3' end seq.
>FC-IC1569Z.Seq
NNNNNNNNNNGACAAAAAAAAATTGGTTTCNTTTTTTTTTTTTTTTCTTTTCTTTTCTTT
TTTTCCCAATTATAATAAATACAAATAAAAAAACTTTTTACAGTTTGATAATTGAATATA
AATGAAGATGGATGGAGAGAAAAAAAAATACACTATTAAAAACAAATCACCTATTTTTTG
GCAGCGACTTTCTTACTTGGAGCTTTTTTAGCAGCTGGCTTCTTACTAACTGCTTTGGTT
ACTTTAGCAGAGTTCTTTTTAGCAGCGGCAGTTTTGGTTGAGGTTGAAGCAGCTTTAGCA
GCTGGTTTCTTTGGTGCAGCTTTTTTGGTTGGAGTAGCTGGTGGAGCGGCAGTTGTTTCA
GTTGAAGTAGCGGTAGTCTTGGCTTTTGGTTTCTTTGCAACTGGACCAAGAGTGGCTTGG
TGTTCCTTTTTACCTTCTTCTGATAATTTGTAACTGGCTTTGACCATTGTAAGAGT
Length of 3' end seq. 476
Connected seq. ID FC-IC1569P
Connected seq.
>FC-IC1569P.Seq
TACATAAATAATTTGTTTTCTTTTTTTTTTTTTTTTCTTTTCTTTTCTTTTTTTCCCAAT
TNTAATAAATCCAAATAAAAAAACTTTTTACAGTTNGATAATTGAATNTAAATGAAAATG
GATGGANAGAAAAAAAAATCCCCTTTTAAAANCAAATCNCCT----------GACAAAAA
AAAATTGGTTTCNTTTTTTTTTTTTTTTCTTTTCTTTTCTTTTTTTCCCAATTATAATAA
ATACAAATAAAAAAACTTTTTACAGTTTGATAATTGAATATAAATGAAGATGGATGGAGA
GAAAAAAAAATACACTATTAAAAACAAATCACCTATTTTTTGGCAGCGACTTTCTTACTT
GGAGCTTTTTTAGCAGCTGGCTTCTTACTAACTGCTTTGGTTACTTTAGCAGAGTTCTTT
TTAGCAGCGGCAGTTTTGGTTGAGGTTGAAGCAGCTTTAGCAGCTGGTTTCTTTGGTGCA
GCTTTTTTGGTTGGAGTAGCTGGTGGAGCGGCAGTTGTTTCAGTTGAAGTAGCGGTAGTC
TTGGCTTTTGGTTTCTTTGCAACTGGACCAAGAGTGGCTTGGTGTTCCTTTTTACCTTCT
TCTGATAATTTGTAACTGGCTTTGACCATTGTAAGAGT
Length of connected seq. 628
Full length Seq ID FC-IC1569E
Full length Seq.
>FC-IC1569E.Seq
ACANAAANAANTTGNTTTCTTTTTTTTTTTTTTTTCTTTTCTTTTCTTTTTTTCCCAATT
ATAATAAATNCAAATAAAAAAACTTTTTACAGTTTGATAATTGAATATAAATGAANATGG
ATGGAGAGAAAAAAAAATNCNCTNTTAAAAACAAATCACCTATTTTTTGGCAGCGACTTT
CTTACTTGGAGCTTTTTTAGCAGCTGGCTTCTTACTAACTGCTTTGGTTACTTTAGCAGA
GTTCTTTTTAGCAGCGGCAGTTTTGGTTGAGGTTGAAGCAGCTTTAGCAGCTGGTTTCTT
TGGTGCAGCTTTTTTGGTTGGAGTAGCTGGTGGAGCGGCAGTTGTTTCAGTTGAAGTAGC
GGTAGTCTTGGCTTTTGGTTTCTTTGCAACTGGACCAAGAGTGGCTTGGTGTTCCTTTTT
ACCTTCTTCTGATAATTTGTAACTGGCTTTGACCATTGTAAGAGT
Length of full length seq. 465