NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1562
Library FC-IC
(Link to library)
Clone ID FC-IC1562
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U07878-1
Original site URL
Representative seq. ID FC-IC1562E
(Link to Original site)
Representative DNA sequence 
>FC-IC1562 (FC-IC1562Q) /CSM/FC-IC/FC-IC1562Q.Seq.d/
ACGATTTAAAAGNATCTATACCATTGGTTGGTTTCATTTTAACATCTTGAGTTGTTGCAA
TTGGTTCAGAAACTTGTGGTTTTTTGTTTTGTCTCTTCTTTTTAACAATTAAAACAGTTG
CAGCAGTAGCTCCAATAAGTGCAACACTACCACCAACTGCAATACCAACAATGGCACCAG
TTGATAAAGTTGATGCTGCTACTTCAGAAATAGCTAATGATGCATCTGCACCGGCATAAA
TATTACTAAACTNCTGATGCTGTTAAATCTGAAAATTGATTAACTTCAAATTGTTGAATA
TCTTGACCTGNGATATGATTCAACAATTGTTGGTTNCAGCATCTAAAAGTGTTCTTAAAT
TGGATACTGGTGTTTCAGTTACAGTATAGAGT
sequence update 2001.11.10
Translated Amino Acid sequence 
dlkxsiplvgfilts*VVAIGSETCGFLFCLFFLTIKTVAAVAPISATLPPTAIPTMAPV
DKVDAATSEIANDASAPA*illnx*cc*i*klinfkllniltxdmiqqllvxasksvlkl
dtgvsvtv*s
Translated Amino Acid sequence (All Frames) 
Frame A:
ti*kxlyhwlvsf*hlellqlvqklvvfcfvssf*qlkqlqq*lq*vqhyhqlqyqqwhq
liklmlllqk*lmmhlhrhkyy*txdavksen*ltsnc*is*pxi*fnncwxqhlkvfln
wilvfqlqyr


Frame B:
rfkxiytigwfhfnilsccnwfrnlwffvlsllfnn*nscssssnkcntttncntnngts
**s*ccyfrns**cictginitkllmllnlkid*lqiveyldlxydstivgxsi*kcs*i
gywcfsysie


Frame C:
dlkxsiplvgfilts*VVAIGSETCGFLFCLFFLTIKTVAAVAPISATLPPTAIPTMAPV
DKVDAATSEIANDASAPA*illnx*cc*i*klinfkllniltxdmiqqllvxasksvlkl
dtgvsvtv*s
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1562 (FC-IC1562Q) /CSM/FC-IC/FC-IC1562Q.Seq.d/                   753   0.0
FC-IC1408 (FC-IC1408Q) /CSM/FC-IC/FC-IC1408Q.Seq.d/                   714   0.0
FC-IC1375 (FC-IC1375Q) /CSM/FC-IC/FC-IC1375Q.Seq.d/                   714   0.0
FC-IC0991 (FC-IC0991Q) /CSM/FC-IC/FC-IC0991Q.Seq.d/                   714   0.0
FC-IC0916 (FC-IC0916Q) /CSM/FC-IC/FC-IC0916Q.Seq.d/                   714   0.0
FC-IC0888 (FC-IC0888Q) /CSM/FC-IC/FC-IC0888Q.Seq.d/                   714   0.0
FC-IC0797 (FC-IC0797Q) /CSM/FC-IC/FC-IC0797Q.Seq.d/                   714   0.0
FC-IC0224 (FC-IC0224Q) /CSM/FC-IC/FC-IC0224Q.Seq.d/                   708   0.0
FC-IC1257 (FC-IC1257Q) /CSM/FC-IC/FC-IC1257Q.Seq.d/                   706   0.0
FC-IC0201 (FC-IC0201Q) /CSM/FC-IC/FC-IC0201Q.Seq.d/                   706   0.0
own update 2001.11.19
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC096358|AC096358.6 Rattus norvegicus clone CH230-39K14, WORKING DRAFT SEQUENCE, 7 unordered pieces.    42   0.039  4
AC115838|AC115838.3 Mus musculus clone RP24-194J17, WORKING DRAFT SEQUENCE, 7 ordered pieces.    36   0.040  6
AE016748|AE016748.1 Staphylococcus epidermidis ATCC 12228, section 5 of 9 of the complete genome.    34   0.087  7
AC132521|AC132521.3 Rattus norvegicus clone CH230-29P17, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    40   0.16   5
AC130636|AC130636.3 Rattus norvegicus clone CH230-468L2, WORKING DRAFT SEQUENCE, 2 unordered pieces.    40   0.16   4
AC147002|AC147002.5 Medicago truncatula clone mth2-151m16, WORKING DRAFT SEQUENCE, 8 unordered pieces.    44   0.27   5
AC133131|AC133131.4 Rattus norvegicus clone CH230-77J17, WORKING DRAFT SEQUENCE, 1 ordered piece.    40   0.28   4
CD477303|CD477303.1 eca01-7ms1-f04 Eca01 Eschscholzia californica cDNA clone eca01-7ms1-f04 5', mRNA sequence.    36   0.29   2
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   0.32   9
AC099704|AC099704.4 Mus musculus chromosome 15 clone RP23-256A2 map 15, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46   0.35   1
dna update 2003.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001328_86(CP001328|pid:none) Micromonas sp. RCC299 chromosome ...    34   1.8
CP000116_1700(CP000116|pid:none) Thiobacillus denitrificans ATCC...    32   6.9
protein update 2009. 7. 1
PSORT 

 psg: 0.75  gvh: 0.69  alm: 0.25  top: 0.60  tms: 0.07  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for FC-IC1562 is nuc
5' end seq. ID FC-IC1562F
5' end seq. 
>FC-IC1562F.Seq
ACGATTTAAAAGNATCTATACCATTGGTTGGTTTCATTTTAACATCTTGAGTTGTTGCAA
TTGGTTCAGAAACTTGTGGTTTTTTGTTTTGTCTCTTCTTTTTAACAATTAAAACAGTTG
CAGCAGTAGCTCCAATAAGTGCAACACTACCACCAACTGCAATACCAACAATGGCACCAG
TTGATAAAGTTGATGCTGCTACTTCAGAAATAGCTAATGATGCATCTGCACCGGCATAAA
TATTACTAAACTCTGATGCTGTTAAATCTGAAAATTGATTAACTTCAAATTGTTGAATAT
CTTGACCTGGATATGATTCAACAATTGTTGGTTCAGCATCTAAAAGTGTTCTTAAATTGG
ATACTGGTGTTTCAGTTACAGTATAGAGTNNNNNNNNNN
Length of 5' end seq. 399
3' end seq. ID FC-IC1562Z
3' end seq. 
>FC-IC1562Z.Seq
NNNNNNNNNNACGATTTAAAANATCTATACCNTTGGTTGGTTTCATTTTAACATCTTGAG
TTGTTGCAATTGGTTCAGAAACTTGTGGTTTTTTGTTTTGTCTCTTCTTTTTAACAATTA
AAACAGTTGCAGCAGTAGCTCCAATAAGTGCAACACTACCACCAACTGCAATACCAACAA
TGGCACCAGTTGATAAAGTTGATGCTGCTACTTCAGAAATAGCTAATGATGCATCTGCAC
CGGCATAAATATTACTAAACTNCTGATGCTGTTAAATCTGAAAATTGATTAACTTCAAAT
TGTTGAATATCTTGACCTGNGATATGATTCAACAATTGTTGGTTNCAGCATCTAAAAGTG
TTCTTAAATTGGATACTGGTGTTTCAGTTACAGTATAGAGT
Length of 3' end seq. 401
Connected seq. ID FC-IC1562P
Connected seq. 
>FC-IC1562P.Seq
ACGATTTAAAAGNATCTATACCATTGGTTGGTTTCATTTTAACATCTTGAGTTGTTGCAA
TTGGTTCAGAAACTTGTGGTTTTTTGTTTTGTCTCTTCTTTTTAACAATTAAAACAGTTG
CAGCAGTAGCTCCAATAAGTGCAACACTACCACCAACTGCAATACCAACAATGGCACCAG
TTGATAAAGTTGATGCTGCTACTTCAGAAATAGCTAATGATGCATCTGCACCGGCATAAA
TATTACTAAACTCTGATGCTGTTAAATCTGAAAATTGATTAACTTCAAATTGTTGAATAT
CTTGACCTGGATATGATTCAACAATTGTTGGTTCAGCATCTAAAAGTGTTCTTAAATTGG
ATACTGGTGTTTCAGTTACAGTATAGAGT----------ACGATTTAAAANATCTATACC
NTTGGTTGGTTTCATTTTAACATCTTGAGTTGTTGCAATTGGTTCAGAAACTTGTGGTTT
TTTGTTTTGTCTCTTCTTTTTAACAATTAAAACAGTTGCAGCAGTAGCTCCAATAAGTGC
AACACTACCACCAACTGCAATACCAACAATGGCACCAGTTGATAAAGTTGATGCTGCTAC
TTCAGAAATAGCTAATGATGCATCTGCACCGGCATAAATATTACTAAACTNCTGATGCTG
TTAAATCTGAAAATTGATTAACTTCAAATTGTTGAATATCTTGACCTGNGATATGATTCA
ACAATTGTTGGTTNCAGCATCTAAAAGTGTTCTTAAATTGGATACTGGTGTTTCAGTTAC
AGTATAGAGT
Length of connected seq. 780
Full length Seq ID FC-IC1562E
Full length Seq. 
>FC-IC1562E.Seq
ACGATTTAAAAGNATCTATACCATTGGTTGGTTTCATTTTAACATCTTGAGTTGTTGCAA
TTGGTTCAGAAACTTGTGGTTTTTTGTTTTGTCTCTTCTTTTTAACAATTAAAACAGTTG
CAGCAGTAGCTCCAATAAGTGCAACACTACCACCAACTGCAATACCAACAATGGCACCAG
TTGATAAAGTTGATGCTGCTACTTCAGAAATAGCTAATGATGCATCTGCACCGGCATAAA
TATTACTAAACTNCTGATGCTGTTAAATCTGAAAATTGATTAACTTCAAATTGTTGAATA
TCTTGACCTGNGATATGATTCAACAATTGTTGGTTNCAGCATCTAAAAGTGTTCTTAAAT
TGGATACTGGTGTTTCAGTTACAGTATAGAGT
Length of full length seq. 392