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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1558
Library FC-IC
(Link to library)
Clone ID FC-IC1558
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15578-1
Original site URL
Representative seq. ID FC-IC1558P
(Link to Original site)
Representative DNA sequence 
>FC-IC1558 (FC-IC1558Q) /CSM/FC-IC/FC-IC1558Q.Seq.d/
ACAATTTCAAATGGTGGTTGTGGTTTACCTCTGCAAAAGTTGGATAATGTCCATGTAGCA
TTTCTAACCATACTAACTTTGATTGCTGCTGGATTTTGTAAGAGACTTAATAATGGTGGT
AAAGCATTGTGACTTAATACCAAATCTCTACAATAAGGTGAATCACCTGCAATATTACCT
AAGGCCCAAACTGCTXXXXXXXXXXACAATTNCAAATGGTGGTTGTGGTTTACCTCTGCA
AAAGTTGGATAATGTCCATGTAGCATTTCTAACCATACTAACTTTGATTGCTGCTGGATT
TTGTAAGAGACTTAATAATGGTGGTAAAGCATTGTGACTTAATACCAAATCTCTACAATA
ATGTGAATCACCTGCAATATTACCTAAGGCCCAAACTGCTTGTTCTNTAACGTCATCATG
TGGTGAANTTAATAATAAAACNAATACTTGAATTGCACCATTTTCAATTACAACTCTAGT
TTGTTNTGGTGTT
sequence update 2001.11.23
Translated Amino Acid sequence 
qfqmvvvvylckswimsm*hf*py*l*LLLDFVRDLIMVVKHCDLIPNLYNKVNHLQYYL
RPKL---

---TIXNGGCGLPLQKLDNVHVAFLTILTLIAAGFCKRLNNGGKAL*lntkslq*cespa
ilpkaqtacsxtsscgexnnktnt*iapfsittlvcxgv
Translated Amino Acid sequence (All Frames) 
Frame A:
tisnggcglplqkldnvhvafltiltliaagfckrlnnggkal*lntkslq*gespailp
kaqta---

---TIXNGGCGLPLQKLDNVHVAFLTILTLIAAGFCKRLNNGGKAL*lntkslq*cespa
ilpkaqtacsxtsscgexnnktnt*iapfsittlvcxgv

Frame B:
qfqmvvvvylckswimsm*hf*py*l*LLLDFVRDLIMVVKHCDLIPNLYNKVNHLQYYL
RPKL---

---qxqmvvvvylckswimsm*hf*py*l*llldfvrdlimvvkhcdlipnlynnvnhlq
yylrpkllvl*rhhvvxliikxilelhhfqlql*fvxv

Frame C:
nfkwwlwftsakvg*cpcsisnhtnfdccwil*et**ww*sivt*yqistir*itcnit*
gpnc---

---nxkwwlwftsakvg*cpcsisnhtnfdccwil*et**ww*sivt*yqistim*itcn
it*gpnclfxnvimw*x***nxylnctifnynsslxwc
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1558 (FC-IC1558Q) /CSM/FC-IC/FC-IC1558Q.Seq.d/                   888   0.0
CFI869 (CFI869Q) /CSM/CF/CFI8-C/CFI869Q.Seq.d/                        539   e-152
FC-IC1531 (FC-IC1531Q) /CSM/FC-IC/FC-IC1531Q.Seq.d/                   531   e-150
FC-IC1532 (FC-IC1532Q) /CSM/FC-IC/FC-IC1532Q.Seq.d/                   519   e-146
AFF204 (AFF204Q) /CSM/AF/AFF2-A/AFF204Q.Seq.d/                        494   e-139
AFL634 (AFL634Q) /CSM/AF/AFL6-B/AFL634Q.Seq.d/                        385   e-106
AFK832 (AFK832Q) /CSM/AF/AFK8-B/AFK832Q.Seq.d/                        383   e-105
SLK645 (SLK645Q) /CSM/SL/SLK6-B/SLK645Q.Seq.d/                        297   8e-80
AFN276 (AFN276Q) /CSM/AF/AFN2-D/AFN276Q.Seq.d/                        194   9e-49
CHI254 (CHI254Q) /CSM/CH/CHI2-C/CHI254Q.Seq.d/                        182   3e-45
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115680|AC115680.2 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.   539   e-149  1
N97682|N97682.1 1007C3 czapPFDd2.1, Debopam Chakrabarti Plasmodium falciparum cDNA clone PF1007C, mRNA sequence.    58   2e-07  2
AF529881|AF529881.1 Plasmodium falciparum 3D7 karyopherin alpha gene, complete cds.    58   6e-07  2
AC003114|AC003114.1 Arabidopsis thaliana chromosome 1 BAC T12M4 sequence, complete sequence.    64   2e-06  1
AY050888|AY050888.1 Arabidopsis thaliana putative importin beta binding domain (T12M4.2) mRNA, complete cds.    64   2e-06  1
AY090944|AY090944.1 Arabidopsis thaliana putative importin alpha protein (At1g09270) mRNA, complete cds.    64   2e-06  1
Y14616|Y14616.1 Arabidopsis thaliana partial mRNA for importin alpha-like protein 4.    64   2e-06  1
AV797559|AV797559.1 Arabidopsis thaliana cDNA clone:RAFL09-12-J22, 3'-end.    64   2e-06  1
AY117313|AY117313.1 Arabidopsis thaliana putative importin alpha protein (At1g09270) mRNA, complete cds.    64   2e-06  1
AF367284|AF367284.1 Arabidopsis thaliana At1g09270/T12M4_2 mRNA, partial cds.    64   2e-06  1
dna update 2003.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q76P29) RecName: Full=Importin subunit alpha-B; AltName: Full=K...   186   2e-46
AF369707_1(AF369707|pid:none) Capsicum annuum importin alpha 2 m...   128   6e-29
EF137254_1(EF137254|pid:none) Nicotiana benthamiana Impa2 mRNA, ...   127   2e-28
AB236757_1(AB236757|pid:none) Trifolium pratense RNA for putativ...   125   4e-28
T52098(T52098) probable nuclear transport factor importin alpha ...   124   9e-28
AF361811_1(AF361811|pid:none) Arabidopsis thaliana AT3g06720/F3E...   124   9e-28
EF147992_1(EF147992|pid:none) Populus trichocarpa clone WS0126_I...   123   3e-27
EF144903_1(EF144903|pid:none) Populus trichocarpa clone WS01119_...   122   3e-27
CP001576_328(CP001576|pid:none) Micromonas sp. RCC299 chromosome...   122   4e-27
AB024311_1(AB024311|pid:none) Oryza sativa Japonica Group mRNA f...   119   7e-27
protein update 2009. 5.21
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.26  top: 0.70  tms: 0.07  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for FC-IC1558 is cyt
5' end seq. ID FC-IC1558F
5' end seq. 
>FC-IC1558F.Seq
ACAATTTCAAATGGTGGTTGTGGTTTACCTCTGCAAAAGTTGGATAATGTCCATGTAGCA
TTTCTAACCATACTAACTTTGATTGCTGCTGGATTTTGTAAGAGACTTAATAATGGTGGT
AAAGCATTGTGACTTAATACCAAATCTCTACAATAAGGTGAATCACCTGCAATATTACCT
AAGGCCCAAACTGCTNNNNNNNNNN
Length of 5' end seq. 205
3' end seq. ID FC-IC1558Z
3' end seq. 
>FC-IC1558Z.Seq
NNNNNNNNNNACAATTNCAAATGGTGGTTGTGGTTTACCTCTGCAAAAGTTGGATAATGT
CCATGTAGCATTTCTAACCATACTAACTTTGATTGCTGCTGGATTTTGTAAGAGACTTAA
TAATGGTGGTAAAGCATTGTGACTTAATACCAAATCTCTACAATAATGTGAATCACCTGC
AATATTACCTAAGGCCCAAACTGCTTGTTCTNTAACGTCATCATGTGGTGAANTTAATAA
TAAAACNAATACTTGAATTGCACCATTTTCAATTACAACTCTAGTTTGTTNTGGTGTT
Length of 3' end seq. 298
Connected seq. ID FC-IC1558P
Connected seq. 
>FC-IC1558P.Seq
ACAATTTCAAATGGTGGTTGTGGTTTACCTCTGCAAAAGTTGGATAATGTCCATGTAGCA
TTTCTAACCATACTAACTTTGATTGCTGCTGGATTTTGTAAGAGACTTAATAATGGTGGT
AAAGCATTGTGACTTAATACCAAATCTCTACAATAAGGTGAATCACCTGCAATATTACCT
AAGGCCCAAACTGCT----------ACAATTNCAAATGGTGGTTGTGGTTTACCTCTGCA
AAAGTTGGATAATGTCCATGTAGCATTTCTAACCATACTAACTTTGATTGCTGCTGGATT
TTGTAAGAGACTTAATAATGGTGGTAAAGCATTGTGACTTAATACCAAATCTCTACAATA
ATGTGAATCACCTGCAATATTACCTAAGGCCCAAACTGCTTGTTCTNTAACGTCATCATG
TGGTGAANTTAATAATAAAACNAATACTTGAATTGCACCATTTTCAATTACAACTCTAGT
TTGTTNTGGTGTT
Length of connected seq. 483
Full length Seq ID -
Full length Seq. -
Length of full length seq. -