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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1539
Library FC-IC
(Link to library)
Clone ID FC-IC1539
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16278-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>FC-IC1539 (FC-IC1539Q) /CSM/FC-IC/FC-IC1539Q.Seq.d/
ACCATTTTCTTGAACGGAGNAGAGTGGAGATTTAATTTATCGGTAACTTCAGCGACACTC
ATGGCATTTGGAAGATCTTGTTTGTTACAGAAAACTAATAAAACAGCATCACGTAATTCA
TCTTCATTGAGCATTTTAGTGAGTTCATCACAAGCTTCTTGAATTCTTTCTCTATCGTTT
GAATCAACAACAAAGATAAGACCTTGAGTATTTTGGAAATAATGTCTCCATAATGGACGA
ATTTTATCTTGACCACCAACATCCCATACAGTGAAGTTAATGTTTTTGAATTCGACAGTT
TCGACATTGAAACCAATGGTTGGAATTGTAGTAACAATTTCACCTAATTTAAGTTTGTAT
AAAATGGTGGTTTTACCAGCAGCATCTAAACCGACCATTAAAATTCTCATATCTTTTTTG
CCAAAGAAACGGCTGAAAAGTTTACCAAAAGCGAGACCCATTGTTCTAGATAATATAGAT
TAATTAATTTATTAGTTTTTTTTTTTTTTTTTGATTATTTATAAATATATATAGTTTTTA
ATGNGAATAAATCAGTTGACTCTAAAAAAAAATAAAATAAAAAAAATNAANTTTANTTTT
AATCAACCNAAAAAAAAAAAAAAAAAAAAGTTTGTCCCTTGGGCNGGAACCNCCCAAAGC
CGAATTTTGXXXXXXXXXX
sequence update 2001.11. 5
Translated Amino Acid sequence 
tiflngxewrfnlsvtsatlmafgrscllqktnktasrnssslsilvsssqas*ilslsf
esttkirp*vfwk*clhngrils*PPTSHTVKLMFLNSTVSTLKPMVGIVVTISPNLSLY
KMVVLPAASKPTIKILISFLPKKRLKSLPKARPIVLDNID*liy*fffffliiykyi*fl
mxinqltlkknkikkxxfxfnqpkkkkkkkfvpwagtxqsri---
Translated Amino Acid sequence (All Frames) 
Frame A:
tiflngxewrfnlsvtsatlmafgrscllqktnktasrnssslsilvsssqas*ilslsf
esttkirp*vfwk*clhngrils*PPTSHTVKLMFLNSTVSTLKPMVGIVVTISPNLSLY
KMVVLPAASKPTIKILISFLPKKRLKSLPKARPIVLDNID*liy*fffffliiykyi*fl
mxinqltlkknkikkxxfxfnqpkkkkkkkfvpwagtxqsri---


Frame B:
pfs*texsgdliyr*lqrhswhledlvcyrklikqhhvihlh*af**vhhkllefflyrl
nqqqr*dleyfgnnvsimdefyldhqhpiq*s*cf*irqfrh*nqwlel**qfhli*vci
kwwfyqqhlnrplkfsylfcqrng*kvyqkrdplf*ii*in*fisfffff*lfiniysf*
xe*is*l*kkik*kkxxlxlinxkkkkkkslslgxeppkaef---


Frame C:
hflerxrvei*fignfsdthgiwkilfvten**nsit*fifiehfsefitsflnsfsiv*
innkdktlsileimsp*wtnfilttnipysevnvfefdsfdietngwncsnnft*fkfv*
nggftssi*tdh*nshiffaketaekftksethcsr*yrlinllvfffffdyl*iyivfn
xnksvdskkk*nkknxxxf*stxkkkkkkvcplgxnxpkpnf---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1539 (FC-IC1539Q) /CSM/FC-IC/FC-IC1539Q.Seq.d/                   975   0.0
SSC480 (SSC480Q) /CSM/SS/SSC4-D/SSC480Q.Seq.d/                        961   0.0
SSL154 (SSL154Q) /CSM/SS/SSL1-C/SSL154Q.Seq.d/                        946   0.0
SSC436 (SSC436Q) /CSM/SS/SSC4-B/SSC436Q.Seq.d/                        932   0.0
SSJ855 (SSJ855Q) /CSM/SS/SSJ8-C/SSJ855Q.Seq.d/                        918   0.0
SSC884 (SSC884Q) /CSM/SS/SSC8-D/SSC884Q.Seq.d/                        910   0.0
SSA636 (SSA636Q) /CSM/SS/SSA6-B/SSA636Q.Seq.d/                        910   0.0
SSA374 (SSA374Q) /CSM/SS/SSA3-D/SSA374Q.Seq.d/                        910   0.0
SSA191 (SSA191Q) /CSM/SS/SSA1-D/SSA191Q.Seq.d/                        910   0.0
SSC323 (SSC323Q) /CSM/SS/SSC3-A/SSC323Q.Seq.d/                        904   0.0
own update 2002. 7.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ000063|AJ000063.1 Dictyostelium discoideum mRNA for ADP-ribosylation factor 1.   886   0.0    2
BX550028|BX550028.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse110e05_q1c.   232   2e-61  2
CD524199|CD524199.1 ku97c01.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:ARF1_DROME P35676 ADP-RIBOSYLATION FACTOR 1. [1] ;, mRNA sequence.   210   8e-55  2
AI187662|AI187662.1 EST485 Manduca sexta male antennae Uni-ZAP XR library Manduca sexta cDNA clone pMsmaD225 5' similar to ADP-ribosylation factor 1, mRNA sequence.   224   1e-54  1
BI073736|BI073736.1 kt34c04.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:ARF1_CAEEL Q10943 ADP-RIBOSYLATION FACTOR 1. [1] ;, mRNA sequence.   210   1e-53  2
CD525279|CD525279.1 kw14d01.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:ARF1_DROME P35676 ADP-RIBOSYLATION FACTOR 1. [1] ;, mRNA sequence.   194   5e-50  2
BG225964|BG225964.1 kp44b08.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to gb:M36341 ADP-RIBOSYLATION FACTOR 4 (HUMAN);, mRNA sequence.   174   1e-49  3
AB001051|AB001051.1 Dugesia japonica mRNA for ADP-ribosylation factor, complete cds.   170   1e-46  3
CF507075|CF507075.1 USDA-FP_122000-573 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-53_E03 5', mRNA sequence.   165   2e-43  2
BQ624303|BQ624303.1 USDA-FP_01394 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01394 5', mRNA sequence.   165   2e-43  2
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O00909) RecName: Full=ADP-ribosylation factor 1;  &AJ000063_1(A...   298   7e-80
BT065309_1(BT065309|pid:none) Zea mays full-length cDNA clone ZM...   267   2e-70
AF108891_1(AF108891|pid:none) Capsicum annuum ADP-ribosylation f...   266   5e-70
DQ191654_1(DQ191654|pid:none) Solanum tuberosum ARF-like small G...   266   5e-70
(P36397) RecName: Full=ADP-ribosylation factor 1;          Short...   266   5e-70
EU959162_1(EU959162|pid:none) Zea mays clone 211242 ADP-ribosyla...   265   9e-70
AF372902_1(AF372902|pid:none) Arabidopsis thaliana AT3g62290/T17...   265   1e-69
EU371728_1(EU371728|pid:none) Brassica napus ADP-ribosylation fa...   264   2e-69
AC009398_7(AC009398|pid:none) Genomic sequence for Arabidopsis t...   263   3e-69
AC005990_5(AC005990|pid:none) Arabidopsis thaliana chromosome 1 ...   263   3e-69
protein update 2009. 5.21
PSORT 

 psg: 0.88  gvh: 0.52  alm: 0.36  top: 0.57  tms: 0.00  mit: 0.51  mip: 0.00
 nuc: 0.09  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: mitochondrial
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: cytoplasmic

>> prediction for FC-IC1539 is mit
5' end seq. ID FC-IC1539F
5' end seq. 
>FC-IC1539F.Seq
ACCATTTTCTTGAACGGAGNAGAGTGGAGATTTAATTTATCGGTAACTTCAGCGACACTC
ATGGCATTTGGAAGATCTTGTTTGTTACAGAAAACTAATAAAACAGCATCACGTAATTCA
TCTTCATTGAGCATTTTAGTGAGTTCATCACAAGCTTCTTGAATTCTTTCTCTATCGTTT
GAATCAACAACAAAGATAAGACCTTGAGTATTTTGGAAATAATGTCTCCATAATGGACGA
ATTTTATCTTGACCACCAACATCCCATACAGTGAAGTTAATGTTTTTGAATTCGACAGTT
TCGACATTGAAACCAATGGTTGGAATTGTAGTAACAATTTCACCTAATTTAAGTTTGTAT
AAAATGGTGGTTTTACCAGCAGCATCTAAACCGACCATTAAAATTCTCATATCTTTTTTG
CCAAAGAAACGGCTGAAAAGTTTACCAAAAGCGAGACCCATTGTTCTAGATAATATAGAT
TAATTAATTTATTAGTTTTTTTTTTTTTTTTTGATTATTTATAAATATATATAGTTTTTA
ATGNGAATAAATCAGTTGACTCTAAAAAAAAATAAAATAAAAAAAATNAANTTTANTTTT
AATCAACCNAAAAAAAAAAAAAAAAAAAAGTTTGTCCCTTGGGCNGGAACCNCCCAAAGC
CGAATTTTGNNNNNNNNNN
Length of 5' end seq. 679
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -