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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1535
Library FC-IC
(Link to library)
Clone ID FC-IC1535
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14349-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>FC-IC1535 (FC-IC1535Q) /CSM/FC-IC/FC-IC1535Q.Seq.d/
XXXXXXXXXXACCTCGGCCGCGACCACGAGTATTGATAGTCGAGGNCAACGTATCTACAT
TCGTTTTCTGGGAGACATTTGGTGAATTCATCGAATGAACAACCAGCTGGTAAGGTGGAG
TCAACAATGATTTCTTTTGAATCGTCAGAGATTCTGTAGATGATACCACCATATTCACGA
CCTAACTTTAAGATCGTTGAAGGTTGAAACGCAGTTTGGAGCTAGAGCAATACCTGAAGA
CATTTTTTATATATAGTTTTTTATTTAGTTGAGTAAG
sequence update 2001.11. 5
Translated Amino Acid sequence 
---lgrdhey**SRXTYLHSFSGRHLVNSSNEQPAGKVESTMISFESSEIL*mippysrp
nfkiveg*navws*snt*rhflyivfylve*
Translated Amino Acid sequence (All Frames) 
Frame A:
---prprprvlivexnvstfvfwetfgefie*ttsw*ggvnndff*ivrdsvddttiftt
*l*dr*rlkrsleleqylktffiysflfs*v


Frame B:
---lgrdhey**SRXTYLHSFSGRHLVNSSNEQPAGKVESTMISFESSEIL*mippysrp
nfkiveg*navws*snt*rhflyivfylve*


Frame C:
---saattsidsrgqriyirflgdiw*ihrmnnqlvrwsqq*fllnrqrfcr*yhhihdl
tlrslkvetqfgaraipedifyi*ffi*lsk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1535 (FC-IC1535Q) /CSM/FC-IC/FC-IC1535Q.Seq.d/                   452   e-126
VSJ890 (VSJ890Q) /CSM/VS/VSJ8-D/VSJ890Q.Seq.d/                        383   e-105
VSJ584 (VSJ584Q) /CSM/VS/VSJ5-D/VSJ584Q.Seq.d/                        383   e-105
VSJ550 (VSJ550Q) /CSM/VS/VSJ5-C/VSJ550Q.Seq.d/                        383   e-105
VSJ437 (VSJ437Q) /CSM/VS/VSJ4-B/VSJ437Q.Seq.d/                        383   e-105
VSJ243 (VSJ243Q) /CSM/VS/VSJ2-B/VSJ243Q.Seq.d/                        383   e-105
VSI135 (VSI135Q) /CSM/VS/VSI1-B/VSI135Q.Seq.d/                        383   e-105
VSG665 (VSG665Q) /CSM/VS/VSG6-C/VSG665Q.Seq.d/                        383   e-105
VSF674 (VSF674Q) /CSM/VS/VSF6-D/VSF674Q.Seq.d/                        383   e-105
VSE444 (VSE444Q) /CSM/VS/VSE4-B/VSE444Q.Seq.d/                        383   e-105
own update 2001.11.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D37980|D37980.1 Dictyostelium discoidium DDCOF1 gene for cofilin, complete cds (exon1-2).   307   e-100  2
D37981|D37981.1 Dictyostelium discoidium DDCOF2 gene for cofilin, complete cds.   307   e-100  2
X04004|X04004.1 Dictyostelium discoideum mRNA for contact site A (csA) protein.   168   2e-38  1
CF935440|CF935440.1 TrEST-B38C11.g TrEST-B Hypocrea jecorina cDNA clone Tr-B38C11.g 5', mRNA sequence.    36   0.010  2
CF932517|CF932517.1 TrEST-B20D04.g TrEST-B Hypocrea jecorina cDNA clone Tr-B20D04.g 5' similar to rat L29; Rpl29p [Saccharomyces cerevisiae], mRNA sequence.    36   0.011  2
CF932318|CF932318.1 TrEST-B40A12.g TrEST-B Hypocrea jecorina cDNA clone Tr-B40A12.g 5' similar to hypothetical protein MG03577.4 [Magnaporthe grisea 70-15], mRNA sequence.    36   0.014  2
CF932976|CF932976.1 TrEST-B38H12.g TrEST-B Hypocrea jecorina cDNA clone Tr-B38H12.g 5' similar to rat S25; belongs to the S25E family of ribosomal proteins; Rps25bp [Saccharomyces cerevisiae], mRNA sequence.    36   0.014  2
CF933085|CF933085.1 TrEST-B38A06.g TrEST-B Hypocrea jecorina cDNA clone Tr-B38A06.g 5' similar to rat L9; Rpl9bp [Saccharomyces cerevisiae], mRNA sequence.    36   0.014  2
CF933702|CF933702.1 TrEST-B25D10.g TrEST-B Hypocrea jecorina cDNA clone Tr-B25D10.g 5', mRNA sequence.    36   0.015  2
CF932538|CF932538.1 TrEST-B33F06.g TrEST-B Hypocrea jecorina cDNA clone Tr-B33F06.g 5' similar to rat S25; belongs to the S25E family of ribosomal proteins; Rps25bp [Saccharomyces cerevisiae], mRNA sequence.    36   0.016  2
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54706) RecName: Full=Cofilin-1;  &D37980_1(D37980|pid:none) &D...   112   1e-30
(Q96VU9) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi...    56   5e-08
FM992692_38(FM992692|pid:none) Candida dubliniensis CD36 chromos...    54   1e-07
(Q966T6) RecName: Full=Cofilin-2;  &AB055926_1(AB055926|pid:none...    56   4e-07
CP000501_299(CP000501|pid:none) Pichia stipitis CBS 6054 chromos...    51   8e-07
AP009325_19(AP009325|pid:none) Musa balbisiana genomic DNA, BAC ...    54   1e-06
AY428595_1(AY428595|pid:none) Helianthus annuus clone HA10-7 put...    54   1e-06
(Q6CQ22) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi...    50   1e-06
(Q9HF97) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi...    50   3e-06
EF084655_1(EF084655|pid:none) Picea sitchensis clone WS02722_D11...    53   4e-06
protein update 2009. 5.21
PSORT 

 psg: 0.82  gvh: 0.37  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 32.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for FC-IC1535 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-IC1535Z
3' end seq. 
>FC-IC1535Z.Seq
NNNNNNNNNNACCTCGGCCGCGACCACGAGTATTGATAGTCGAGGNCAACGTATCTACAT
TCGTTTTCTGGGAGACATTTGGTGAATTCATCGAATGAACAACCAGCTGGTAAGGTGGAG
TCAACAATGATTTCTTTTGAATCGTCAGAGATTCTGTAGATGATACCACCATATTCACGA
CCTAACTTTAAGATCGTTGAAGGTTGAAACGCAGTTTGGAGCTAGAGCAATACCTGAAGA
CATTTTTTATATATAGTTTTTTATTTAGTTGAGTAAG
Length of 3' end seq. 277
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -