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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1517
Library FC-IC
(Link to library)
Clone ID FC-IC1517
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15103-1
Original site URL
Representative seq. ID FC-IC1517E
(Link to Original site)
Representative DNA sequence 
>FC-IC1517 (FC-IC1517Q) /CSM/FC-IC/FC-IC1517Q.Seq.d/
TTTTTTTTTGAAAAAAAAATATCTAAATGTTACACTTTTATTGGAAATTTTTAAGATAAT
TTTAATTATTTTGGTAAAGCAATTCGTTTCAGGTGTGTATGATGGCTCTTTTCCACCATT
ATTTTTAATAATAACTTTTCTTAAAAGTTCAGCAGTCTTTTTGAAATGTTTGGAATTTGC
TAAATCTAAAGCACCATTCATTAAAGTTGTGAAACCTTCTTTACTTGTATCAGTAAATTC
TACATGTTTTTCTAATTTACTTTCAAATCTAAAAACGAATAGGTCATCATCAGAAAATTC
ACTATTTCTTCTGAAGTTCATGAAATTTTCAAAGAGAGTATGGGTTGATGGTGATTTTAA
GGCAAGTCTCTTTGATAAATCTATCATTTTCTTAAATTCAATACCATTCTTGATTCCTTG
GATTGGACCTACAAATTGGAGATTACTTTCTAAAGCAGT
sequence update 2001.11.10
Translated Amino Acid sequence 
FFLKKKYLNVTLLLEIFKIILIILVKQFVSGVYDGSFPPLFLIITFLKSSAVFLKCLEFA
KSKAPFIKVVKPSLLVSVNSTCFSNLLSNLKTNRSSSENSLFLLKFMKFSKRVWVDGDFK
ASLFDKSIIFLNSIPFLIPWIGPTNWRLLSKA
Translated Amino Acid sequence (All Frames) 
Frame A:
fffekkiskcytfignf*dnfnyfgkairfrcv*wlfstiifnnnfs*kfsslfemfgic
*i*stih*scetfftciskfymff*ftfkskne*viirkftissevheifkesmg*w*f*
gksl**iyhflkfntildsldwtykleitf*ss


Frame B:
FFLKKKYLNVTLLLEIFKIILIILVKQFVSGVYDGSFPPLFLIITFLKSSAVFLKCLEFA
KSKAPFIKVVKPSLLVSVNSTCFSNLLSNLKTNRSSSENSLFLLKFMKFSKRVWVDGDFK
ASLFDKSIIFLNSIPFLIPWIGPTNWRLLSKA


Frame C:
ff*kkni*mlhfywkflr*f*lfw*snsfqvcmmalfhhyf***lflkvqqsf*nvwnll
nlkhhslkl*nllylyq*ilhvfliyfqi*krighhqkihyff*ss*nfqreyglmvilr
qvslinlsfs*iqyhs*flgldlqigdyflkq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1517 (FC-IC1517Q) /CSM/FC-IC/FC-IC1517Q.Seq.d/                   872   0.0
VFE376 (VFE376Q) /CSM/VF/VFE3-D/VFE376Q.Seq.d/                        841   0.0
VFN561 (VFN561Q) /CSM/VF/VFN5-C/VFN561Q.Seq.d/                        462   e-129
FC-AC16 (FC-AC16Q) /CSM/FC/FC-AC/FC-AC16Q.Seq.d/                      281   5e-75
VHG665 (VHG665Q) /CSM/VH/VHG6-C/VHG665Q.Seq.d/                         40   0.029
CHR393 (CHR393Q) /CSM/CH/CHR3-D/CHR393Q.Seq.d/                         40   0.029
CHL877 (CHL877Q) /CSM/CH/CHL8-D/CHL877Q.Seq.d/                         40   0.029
CHG679 (CHG679Q) /CSM/CH/CHG6-D/CHG679Q.Seq.d/                         40   0.029
VFE431 (VFE431Q) /CSM/VF/VFE4-B/VFE431Q.Seq.d/                         38   0.11
SSM561 (SSM561Q) /CSM/SS/SSM5-C/SSM561Q.Seq.d/                         38   0.11
own update 2002.10. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF083031|AF083031.2 Guillardia theta nucleomorph chromosome 3, complete sequence.    34   0.001  10
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   0.003  13
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    34   0.003  12
AY323903|AY323903.1 Saccharomyces paradoxus dihydroorotate dehydrogenase (URA1) gene, complete cds.    40   0.003  4
AX344560|AX344560.1 Sequence 11 from Patent WO0200932.             36   0.004  11
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    32   0.017  13
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2.    32   0.020  12
AC087244|AC087244.17 Homo sapiens 12 BAC RP11-444N1 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    40   0.025  6
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   0.027  12
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    32   0.028  11
dna update 2003.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF211135_1(AF211135|pid:none) Carsonella ruddii natural-host Cte...    37   0.16
AF211133_2(AF211133|pid:none) Carsonella ruddii natural-host Cte...    36   0.37
(Q0TUK6) RecName: Full=Arylsulfatase;          EC=3.1.6.1; AltNa...    35   0.62
AF211134_1(AF211134|pid:none) Carsonella ruddii natural-host Cte...    35   0.62
CP000881_71(CP000881|pid:none) Hemiselmis andersenii chromosome ...    35   0.81
AP008955_2488(AP008955|pid:none) Brevibacillus brevis NBRC 10059...    35   0.81
(P57615) RecName: Full=Oxygen-independent coproporphyrinogen-III...    35   1.1
(Q8K9B3) RecName: Full=Phosphoglycerate kinase;          EC=2.7....    34   1.4
CP001056_3086(CP001056|pid:none) Clostridium botulinum B str. Ek...    34   1.8
FJ234838_29(FJ234838|pid:none) Brachypodium sylvaticum clone BAC...    33   2.4
protein update 2009. 7. 1
PSORT 

 psg: 0.85  gvh: 0.63  alm: 0.22  top: 0.47  tms: 0.13  mit: 0.20  mip: 0.19
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 12.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoplasmic
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for FC-IC1517 is end
5' end seq. ID FC-IC1517F
5' end seq. 
>FC-IC1517F.Seq
TTTTTTTTTGAAAAAAAAATATCTAAATGTTACACTTTTATTGGAAATTTTTAAGATAAT
TTTAATTATTTTGGTAAAGCAATTCNTTTCAGGTGTGTATGATGGCTCTTTTCCACCATT
ATTTTTAATAATAACTTTTCTTAAAAGTTCAGCAGTCTTTTTGAAATGTTTGGAATTTGC
TAAATCTAAAGCACCATTCATTAAAGTTGTGAAACCTTCTTTACTTGTATCAGTAAATTC
TACATGTTTTTCTAATTTACTTTCAAATCTAAAAACGAATAGGTCATCATCAGAAAATTC
ACTATTTCTTCTGAAGTTCATGAAATTTTCAAAGANAGTATGGGTTGATGGTGATTTTAA
GGCAAGTCTCTTTGATAAATCTATCATTTTCTTAAATTCAATACCATTCTTGATTCCTTG
GATTGGACCTACAAATTGGAGATTACTTTCTAAAGCAGTNNNNNNNNNN
Length of 5' end seq. 469
3' end seq. ID FC-IC1517Z
3' end seq. 
>FC-IC1517Z.Seq
NNNNNNNNNNTTTTTTTTTGAAAAAAAAATATCTAAATGTTACACTTTTATTGGAAATTT
TTAAGATAATTTTAATTATTTTGGTAAAGCAATTGTTTCAGGTGTGTATGATGGCTCTTT
TCCACCATTATTTTTAATAATAACTTTTCTTAAAAGTTCAGCAGTCTTTTTGAAATGTTT
GGAATTTGCTAAATCTAAAGCACCATTCATTAAAGTTGTGAAACCTTCTTTACTTGTATC
AGTAAATTCTACATGTTTTTCTAATTTACTTTCAAATCTAAAAACGAATAGGTCATCATC
AGAAAATTCACTATTTCTTCTGAAGTTCATGAAATTTTCAAAGAGAGTATGGGTTGATGG
TGATTTTAAGGCAAGTCTCTTTGATAAATCTATCATTTTCTTAAATTCAATACCATTCTT
GATTCCTTGGATTGGACCTACAAATTGGAGATTACTTTCTAAAGCAGT
Length of 3' end seq. 468
Connected seq. ID FC-IC1517P
Connected seq. 
>FC-IC1517P.Seq
TTTTTTTTTGAAAAAAAAATATCTAAATGTTACACTTTTATTGGAAATTTTTAAGATAAT
TTTAATTATTTTGGTAAAGCAATTCNTTTCAGGTGTGTATGATGGCTCTTTTCCACCATT
ATTTTTAATAATAACTTTTCTTAAAAGTTCAGCAGTCTTTTTGAAATGTTTGGAATTTGC
TAAATCTAAAGCACCATTCATTAAAGTTGTGAAACCTTCTTTACTTGTATCAGTAAATTC
TACATGTTTTTCTAATTTACTTTCAAATCTAAAAACGAATAGGTCATCATCAGAAAATTC
ACTATTTCTTCTGAAGTTCATGAAATTTTCAAAGANAGTATGGGTTGATGGTGATTTTAA
GGCAAGTCTCTTTGATAAATCTATCATTTTCTTAAATTCAATACCATTCTTGATTCCTTG
GATTGGACCTACAAATTGGAGATTACTTTCTAAAGCAGT----------TTTTTTTTTGA
AAAAAAAATATCTAAATGTTACACTTTTATTGGAAATTTTTAAGATAATTTTAATTATTT
TGGTAAAGCAATTGTTTCAGGTGTGTATGATGGCTCTTTTCCACCATTATTTTTAATAAT
AACTTTTCTTAAAAGTTCAGCAGTCTTTTTGAAATGTTTGGAATTTGCTAAATCTAAAGC
ACCATTCATTAAAGTTGTGAAACCTTCTTTACTTGTATCAGTAAATTCTACATGTTTTTC
TAATTTACTTTCAAATCTAAAAACGAATAGGTCATCATCAGAAAATTCACTATTTCTTCT
GAAGTTCATGAAATTTTCAAAGAGAGTATGGGTTGATGGTGATTTTAAGGCAAGTCTCTT
TGATAAATCTATCATTTTCTTAAATTCAATACCATTCTTGATTCCTTGGATTGGACCTAC
AAATTGGAGATTACTTTCTAAAGCAGT
Length of connected seq. 917
Full length Seq ID FC-IC1517E
Full length Seq. 
>FC-IC1517E.Seq
TTTTTTTTTGAAAAAAAAATATCTAAATGTTACACTTTTATTGGAAATTTTTAAGATAAT
TTTAATTATTTTGGTAAAGCAATTCGTTTCAGGTGTGTATGATGGCTCTTTTCCACCATT
ATTTTTAATAATAACTTTTCTTAAAAGTTCAGCAGTCTTTTTGAAATGTTTGGAATTTGC
TAAATCTAAAGCACCATTCATTAAAGTTGTGAAACCTTCTTTACTTGTATCAGTAAATTC
TACATGTTTTTCTAATTTACTTTCAAATCTAAAAACGAATAGGTCATCATCAGAAAATTC
ACTATTTCTTCTGAAGTTCATGAAATTTTCAAAGAGAGTATGGGTTGATGGTGATTTTAA
GGCAAGTCTCTTTGATAAATCTATCATTTTCTTAAATTCAATACCATTCTTGATTCCTTG
GATTGGACCTACAAATTGGAGATTACTTTCTAAAGCAGT
Length of full length seq. 459