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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1504
Library FC-IC
(Link to library)
Clone ID FC-IC1504
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U07877-1
Original site URL
Representative seq. ID FC-IC1504E
(Link to Original site)
Representative DNA sequence 
>FC-IC1504 (FC-IC1504Q) /CSM/FC-IC/FC-IC1504Q.Seq.d/
ACAATTAAAGATGAATTTAAAAAAGCAGCCGTTGTAATTCCAGATAATGGTGCAGAAGAA
ATTGTTGATCCATGGGTTCGTTTCATTGGAAATGAAGGAGATCCAAACAATGTTAGAACC
TATACCTTTATGGCATATAATTTAACCAATCCAATTGAAACCATGCAAGGTCATTTACCA
AAATATCAAGAAGTTGGTCCATACAGTTACAATTACATCTATGAACGTATCAATGCAAAC
CTCTATGAAGATGATGAAAAATTAAGTTTCAAACTTTGGAAACGTTATTTCCCAATTGTT
GCTGATGGTTATAGAGATCCAACCAAAGATACTATCTATCATTTCAATTTAGTATATGGT
GCTGCCGTTAAACAAGCAGGTAGTGAAGTTGCACTTTCAGTAGCTTTAACAGCAGCTGCA
ATGGGTAAAATTATCACTGGTCTCACTGACCCAAGCTTTAAAGTTAAAGCTGGTTTCGCT
GCTGCACCAACAGTTACTGCTGGAGCTTTTTCAAATCTTTTAACTGCAGCTGGTAATGAC
CCAGCTACTGCATGTGGACTTNGGCAAACTAGT
sequence update 2001.11.10
Translated Amino Acid sequence 
TIKDEFKKAAVVIPDNGAEEIVDPWVRFIGNEGDPNNVRTYTFMAYNLTNPIETMQGHLP
KYQEVGPYSYNYIYERINANLYEDDEKLSFKLWKRYFPIVADGYRDPTKDTIYHFNLVYG
AAVKQAGSEVALSVALTAAAMGKIITGLTDPSFKVKAGFAAAPTVTAGAFSNLLTAAGND
PATACGLXQTS
Translated Amino Acid sequence (All Frames) 
Frame A:
TIKDEFKKAAVVIPDNGAEEIVDPWVRFIGNEGDPNNVRTYTFMAYNLTNPIETMQGHLP
KYQEVGPYSYNYIYERINANLYEDDEKLSFKLWKRYFPIVADGYRDPTKDTIYHFNLVYG
AAVKQAGSEVALSVALTAAAMGKIITGLTDPSFKVKAGFAAAPTVTAGAFSNLLTAAGND
PATACGLXQTS


Frame B:
qlkmnlkkqpl*fqimvqkkllihgfvslemkeiqtmlepiplwhii*piqlkpckviyq
nikklvhtvtitsmnvsmqtsmkmmkn*vsnfgnvisqlllmvieiqpkilsiisi*ymv
lplnkqvvklhfq*l*qqlqwvklslvsltqalklklvsllhqqlllelfqif*lqlvmt
qllhvdxgkl


Frame C:
n*r*i*kssrcnsr*wcrrnc*smgsfhwk*rrskqc*nlylygi*fnqsn*nharsftk
isrswsiqlqlhl*tyqckpl*r**kikfqtletlfpncc*wl*rsnqryylsfqfsiwc
cr*tsr**sctfssfnsscng*nyhwsh*pkl*s*swfrcctnsycwsffksfncsw**p
sycmwtxan*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1504 (FC-IC1504Q) /CSM/FC-IC/FC-IC1504Q.Seq.d/                  1130   0.0
FC-IC1182 (FC-IC1182Q) /CSM/FC-IC/FC-IC1182Q.Seq.d/                  1130   0.0
FC-IC1150 (FC-IC1150Q) /CSM/FC-IC/FC-IC1150Q.Seq.d/                  1130   0.0
FC-IC0840 (FC-IC0840Q) /CSM/FC-IC/FC-IC0840Q.Seq.d/                  1130   0.0
FC-IC0304 (FC-IC0304Q) /CSM/FC-IC/FC-IC0304Q.Seq.d/                  1122   0.0
FC-IC0275 (FC-IC0275Q) /CSM/FC-IC/FC-IC0275Q.Seq.d/                  1122   0.0
FC-IC0618 (FC-IC0618Q) /CSM/FC-IC/FC-IC0618Q.Seq.d/                  1118   0.0
FC-IC0549 (FC-IC0549Q) /CSM/FC-IC/FC-IC0549Q.Seq.d/                  1074   0.0
FC-IC0758 (FC-IC0758Q) /CSM/FC-IC/FC-IC0758Q.Seq.d/                   954   0.0
FC-IC0104 (FC-IC0104Q) /CSM/FC-IC/FC-IC0104Q.Seq.d/                   533   e-151
own update 2001.11.19
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF238324|AF238324.1 Dictyostelium discoideum lysosomal integral membrane protein II (lmpB) mRNA, complete cds.  1130   0.0    1
AC146585|AC146585.12 Medicago truncatula clone mth2-68o3, WORKING DRAFT SEQUENCE.    40   0.003  8
AE010463|AE010463.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 5 of 197 of the complete genome.    36   0.18   3
AE015940|AE015940.1 Clostridium tetani E88, section 5 of 10 of the complete genome.    32   0.21   11
AC139355|AC139355.7 Medicago truncatula clone mth2-36o3, complete sequence.    34   0.27   6
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    36   0.50   10
BY642435|BY642435.1 Mus musculus visual cortex cDNA, RIKEN full-length enriched library, clone:K430351A15, 3' end partial sequence.    46   0.52   1
CB077669|CB077669.1 hj57f11.g1 Hedyotis terminalis flower - Stage 2 (NYBG) Hedyotis terminalis cDNA clone hj57f11, mRNA sequence.    46   0.52   1
AC142562|AC142562.2 Bos taurus clone RP42-371H23, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46   0.52   1
CA728978|CA728978.1 wdi1c.pk007.g17 wdi1c Triticum aestivum cDNA clone wdi1c.pk007.g17 5' end, mRNA sequence.    46   0.52   1
dna update 2003.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9BKJ9) RecName: Full=Lysosome membrane protein 2-B; AltName: F...   388   e-107
(P27615) RecName: Full=Lysosome membrane protein 2; AltName: Ful...    50   3e-05
AY496973_1(AY496973|pid:none) Schistosoma japonicum CD36-related...    47   4e-04
AY810529_1(AY810529|pid:none) Schistosoma japonicum SJCHGC01875 ...    46   6e-04
AF323588_1(AF323588|pid:none) Manduca sexta sensory neuron membr...    45   0.001
AY814722_1(AY814722|pid:none) Schistosoma japonicum SJCHGC06304 ...    45   0.002
(Q14108) RecName: Full=Lysosome membrane protein 2; AltName: Ful...    44   0.002
(Q55FQ9) RecName: Full=Lysosome membrane protein 2-C; AltName: F...    44   0.003
AM905328_1(AM905328|pid:none) Heliothis virescens mRNA for senso...    44   0.003
AF238325_1(AF238325|pid:none) Dictyostelium discoideum lysosomal...    44   0.003
protein update 2009. 7. 1
PSORT 

 psg: 0.73  gvh: 0.34  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for FC-IC1504 is cyt
5' end seq. ID FC-IC1504F
5' end seq. 
>FC-IC1504F.Seq
ACAATTAAAGATGAATTTAAAAAAGCAGCCGTTGTAATTCCAGATAATGGTGCAGAAGAA
ATTGTTGATCCATGGGTTCGTTTCATTGGAAATGAAGGAGATCCAAACAATGTTAGAACC
TATACCTTTATGGCATATAATTTAACCAATCCAATTGAAACCATGCAAGGTCATTTACCA
AAATATCAAGAAGTTGGTCCATACAGTTACAATTACATCTATGAACGTATCAATGCAAAC
CTCTATGAAGATGATGAAAAATTAAGTTTCAAACTTTGGAAACGTTATTTCCCAATTGTT
GCTGATGGTTATAGAGATCCAACCAAAGATACTATCTATCATTTCAATTTAGTATATGGT
GCTGCCGTTAAACAAGCAGGTAGTGAAGTTGCACTTTCAGTAGCTTTAACAGCAGCTGCA
ATGGGTAAAATTATCACTGGTCTCACTGACCCAAGCTTTAAAGTTAAAGCTGGTTTCGCT
GCTGCACCAACAGTTACTGCTGGAGCTTTTTCAAATCTTTTAACTGCAGCTGGTAATGAC
CCAGCTACTGCATGTGGACTTTGGCAAACTANNNNNNNNNN
Length of 5' end seq. 581
3' end seq. ID FC-IC1504Z
3' end seq. 
>FC-IC1504Z.Seq
NNNNNNNNNNACAATTAAAGATGAATTTAAAAAAGCAGCCGTTGTAATTCCAGATAATGG
TGCAGAAGAAATTGTTGATCCATGGGTTCGTTTCATTGGAAATGAAGGAGATCCAAACAA
TGTTAGAACCTATACCTTTATGGCATATAATTTAACCAATCCAATTGAAACCATGCAAGG
TCATTTACCAAAATATCAAGAAGTTGGTCCATACAGTTACAATTACATCTATGAACGTAT
CAATGCAAACCTCTATGAAGATGATGAAAAATTAAGTTTCAAACTTTGGAAACGTTATTT
CCCAATTGTTGCTGATGGTTATAGAGATCCAACCAAAGATACTATCTATCATTTCAATTT
AGTATATGGTGCTGCCGTTAAACAAGCAGGTAGTGAAGTTGCACTTTCAGTAGCTTTAAC
AGCAGCTGCAATGGGTAAAATTATCACTGGTCTCACTGACCCAAGCTTTAAAGTTAAAGC
TGGTTTCGCTGCTGCACCAACAGTTACTGCTGGAGCTTTTTCAAATCTTTTAACTGCAGC
TGGTAATGACCCAGCTACTGCATGTGGACTTCGGCAAACTAGT
Length of 3' end seq. 583
Connected seq. ID FC-IC1504P
Connected seq. 
>FC-IC1504P.Seq
ACAATTAAAGATGAATTTAAAAAAGCAGCCGTTGTAATTCCAGATAATGGTGCAGAAGAA
ATTGTTGATCCATGGGTTCGTTTCATTGGAAATGAAGGAGATCCAAACAATGTTAGAACC
TATACCTTTATGGCATATAATTTAACCAATCCAATTGAAACCATGCAAGGTCATTTACCA
AAATATCAAGAAGTTGGTCCATACAGTTACAATTACATCTATGAACGTATCAATGCAAAC
CTCTATGAAGATGATGAAAAATTAAGTTTCAAACTTTGGAAACGTTATTTCCCAATTGTT
GCTGATGGTTATAGAGATCCAACCAAAGATACTATCTATCATTTCAATTTAGTATATGGT
GCTGCCGTTAAACAAGCAGGTAGTGAAGTTGCACTTTCAGTAGCTTTAACAGCAGCTGCA
ATGGGTAAAATTATCACTGGTCTCACTGACCCAAGCTTTAAAGTTAAAGCTGGTTTCGCT
GCTGCACCAACAGTTACTGCTGGAGCTTTTTCAAATCTTTTAACTGCAGCTGGTAATGAC
CCAGCTACTGCATGTGGACTTTGGCAAACTA----------ACAATTAAAGATGAATTTA
AAAAAGCAGCCGTTGTAATTCCAGATAATGGTGCAGAAGAAATTGTTGATCCATGGGTTC
GTTTCATTGGAAATGAAGGAGATCCAAACAATGTTAGAACCTATACCTTTATGGCATATA
ATTTAACCAATCCAATTGAAACCATGCAAGGTCATTTACCAAAATATCAAGAAGTTGGTC
CATACAGTTACAATTACATCTATGAACGTATCAATGCAAACCTCTATGAAGATGATGAAA
AATTAAGTTTCAAACTTTGGAAACGTTATTTCCCAATTGTTGCTGATGGTTATAGAGATC
CAACCAAAGATACTATCTATCATTTCAATTTAGTATATGGTGCTGCCGTTAAACAAGCAG
GTAGTGAAGTTGCACTTTCAGTAGCTTTAACAGCAGCTGCAATGGGTAAAATTATCACTG
GTCTCACTGACCCAAGCTTTAAAGTTAAAGCTGGTTTCGCTGCTGCACCAACAGTTACTG
CTGGAGCTTTTTCAAATCTTTTAACTGCAGCTGGTAATGACCCAGCTACTGCATGTGGAC
TTCGGCAAACTAGT
Length of connected seq. 1144
Full length Seq ID FC-IC1504E
Full length Seq. 
>FC-IC1504E.Seq
ACAATTAAAGATGAATTTAAAAAAGCAGCCGTTGTAATTCCAGATAATGGTGCAGAAGAA
ATTGTTGATCCATGGGTTCGTTTCATTGGAAATGAAGGAGATCCAAACAATGTTAGAACC
TATACCTTTATGGCATATAATTTAACCAATCCAATTGAAACCATGCAAGGTCATTTACCA
AAATATCAAGAAGTTGGTCCATACAGTTACAATTACATCTATGAACGTATCAATGCAAAC
CTCTATGAAGATGATGAAAAATTAAGTTTCAAACTTTGGAAACGTTATTTCCCAATTGTT
GCTGATGGTTATAGAGATCCAACCAAAGATACTATCTATCATTTCAATTTAGTATATGGT
GCTGCCGTTAAACAAGCAGGTAGTGAAGTTGCACTTTCAGTAGCTTTAACAGCAGCTGCA
ATGGGTAAAATTATCACTGGTCTCACTGACCCAAGCTTTAAAGTTAAAGCTGGTTTCGCT
GCTGCACCAACAGTTACTGCTGGAGCTTTTTCAAATCTTTTAACTGCAGCTGGTAATGAC
CCAGCTACTGCATGTGGACTTNGGCAAACTAGT
Length of full length seq. 573