FC-IC1494
Library FC-IC
(Link to library)
Clone ID FC-IC1494
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16528-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>FC-IC1494 (FC-IC1494Q) /CSM/FC-IC/FC-IC1494Q.Seq.d/
ATTCCAGCACACTGGCGGCCGTTACTAGTGGATNCGAGCTCGGTACCAAGCTTGGCGTAA
TCATGGTCATACTGGTTTACCAGCNAATAAAAATCCTGGCAATAATGGNGTTATAAACCA
TACTTTTTCTTGATTTTCCATTNTTTNTTGCANATTTACTGTTCCTGCGTAAGTTATTAT
ACTTAATATAATTAATCCTAATGCTACTTCATATGAAACCATTTGCGCTGCTGATCGTAA
TCCTCCTAAAAAGGCATATTTTGAATTACTTGCCCATCCTGNTAATATTATTNCATAAAC
TCCTATCGATGATATTGNTAAAATAAATATCACTCCACTTTTANTACTTGCAAATACACT
TTGTXXXXXXXXXX
sequence update 2002. 5.31
Translated Amino Acid sequence
sstlaavtsgxelgtklgvimvilvyqxikilaimxl*tilfldfpxfxaxllflrklly
li*LILMLLHMKPFALLIVILLKRHILNYLPILXILXHKLLSMILXK*islhfxylqihf
---


Translated Amino Acid sequence (All Frames)
Frame A:
ipahwrpllvdxssvpsla*swsywftsx*kswq*wxykpyfflifhxxlxiycscvsyy
t*yn*s*cyfi*nhlrc*s*ss*kgif*itcpsx*yyxinsyr*yx*nkyhstfxtckyt
l---


Frame B:
fqhtggry*wxraryqawrnhghtglpanknpgnngvinhtfs*fsixxcxftvpa*vii
lniinpnatsyeticaadrnppkkayfellahpxniix*tpiddixkinitpllxlantl
---


Frame C:
sstlaavtsgxelgtklgvimvilvyqxikilaimxl*tilfldfpxfxaxllflrklly
li*LILMLLHMKPFALLIVILLKRHILNYLPILXILXHKLLSMILXK*islhfxylqihf
---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-IC1494 (FC-IC1494Q) /CSM/FC-IC/FC-IC1494Q.Seq.d/ 662 0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/ 490 e-138
FC-IC1496 (FC-IC1496Q) /CSM/FC-IC/FC-IC1496Q.Seq.d/ 490 e-138
FC-IC1497 (FC-IC1497Q) /CSM/FC-IC/FC-IC1497Q.Seq.d/ 412 e-114
FC-IC1074 (FC-IC1074Q) /CSM/FC-IC/FC-IC1074Q.Seq.d/ 107 1e-22
FC-IC1310 (FC-IC1310Q) /CSM/FC-IC/FC-IC1310Q.Seq.d/ 84 2e-15
FC-IC1701 (FC-IC1701Q) /CSM/FC-IC/FC-IC1701Q.Seq.d/ 68 1e-10
SLG623 (SLG623Q) /CSM/SL/SLG6-A/SLG623Q.Seq.d/ 50 2e-05
VFK219 (VFK219Q) /CSM/VF/VFK2-A/VFK219Q.Seq.d/ 36 0.36
SSL560 (SSL560Q) /CSM/SS/SSL5-C/SSL560Q.Seq.d/ 36 0.36

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

D16466|D16466.1 Dictyostelium discoideum mitochondrial DNA. 490 e-135 1
AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA, complete sequence. 490 e-135 1
AC022305|AC022305.2 Homo sapiens chromosome 15 clone RP11-276K9 map 15q21, LOW-PASS SEQUENCE SAMPLING. 101 4e-44 3
AC019009|AC019009.2 Homo sapiens chromosome 14 clone RP11-259M2 map 14q31, LOW-PASS SEQUENCE SAMPLING. 101 3e-43 3
AC018550|AC018550.2 Homo sapiens chromosome 15 clone RP11-95H15 map 15q21, LOW-PASS SEQUENCE SAMPLING. 101 7e-42 4
BU572414|BU572414.1 BpHi w114 Differentially expressed cDNA libraries of B5 resistant variety rice seedlings responding to brown planthopper feeding Oryza sativa cDNA, mRNA sequence. 135 5e-28 1
BU572315|BU572315.1 BpHi w013 Differentially expressed cDNA libraries of B5 resistant variety rice seedlings responding to brown planthopper feeding Oryza sativa cDNA, mRNA sequence. 135 5e-28 1
BD228914|BD228914.1 Genes and gene expression products that are differentially regulated in prostate cancer. 135 5e-28 1
AX468449|AX468449.1 Sequence 17 from Patent WO0216594. 135 5e-28 1
AR244141|AR244141.1 Sequence 169 from patent US 6476207. 135 5e-28 1
dna update 2003.11.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q2LCR1) RecName: Full=NADH-ubiquinone oxidoreductase chain 1; ... 160 9e-39
(Q37313) RecName: Full=NADH-ubiquinone oxidoreductase chain 1; ... 160 1e-38
EU275727_13(EU275727|pid:none) Dictyostelium fasciculatum strain... 120 1e-26
EU275726_11(EU275726|pid:none) Polysphondylium pallidum strain P... 117 1e-25
AF288091_25(AF288091|pid:none) Thraustochytrium aureum mitochond... 110 2e-23
AF114794_12(AF114794|pid:none) Porphyra purpurea mitochondrion, ... 110 2e-23
AY354963_1(AY354963|pid:none) Blasia pusilla NADH dehydrogenase ... 108 6e-23
AY354957_1(AY354957|pid:none) Conocephalum sp. Qiu 94096 NADH de... 108 6e-23
AY354929_1(AY354929|pid:none) Ricciocarpos natans NADH dehydroge... 108 6e-23
AY354961_1(AY354961|pid:none) Radula complanata NADH dehydrogena... 108 6e-23
protein update 2009. 5.21
PSORT

psg: 0.99 gvh: 0.58 alm: 0.23 top: 0.60 tms: 0.07 mit: 0.38 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.11 leu: 0.45 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for FC-IC1494 is nuc

5' end seq. ID FC-IC1494F
5' end seq.
>FC-IC1494F.Seq
ATTCCAGCACACTGGCGGCCGTTACTAGTGGATNCGAGCTCGGTACCAAGCTTGGCGTAA
TCATGGTCATACTGGTTTACCAGCNAATAAAAATCCTGGCAATAATGGNGTTATAAACCA
TACTTTTTCTTGATTTTCCATTNTTTNTTGCANATTTACTGTTCCTGCGTAAGTTATTAT
ACTTAATATAATTAATCCTAATGCTACTTCATATGAAACCATTTGCGCTGCTGATCGTAA
TCCTCCTAAAAAGGCATATTTTGAATTACTTGCCCATCCTGNTAATATTATTNCATAAAC
TCCTATCGATGATATTGNTAAAATAAATATCACTCCACTTTTANTACTTGCAAATACACT
TTGTNNNNNNNNNN
Length of 5' end seq. 374
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -