FC-IC1440
Library FC-IC
(Link to library)
Clone ID FC-IC1440
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15453-1
Original site URL
Representative seq. ID FC-IC1440E
(Link to Original site)
Representative DNA sequence
>FC-IC1440 (FC-IC1440Q) /CSM/FC-IC/FC-IC1440Q.Seq.d/
ACCTTTTCTACGGAGACCACGGGCTTTGATACCAGCGGAGGTTAAACCTCTTAATTCTCT
ATGTTTGTGGACTGGTTTACAGATCCAGTTGTAACGTGGGTCGTTACGGATGGCATTGTG
AGAGTTATCAACTAAGATGACTTCATAATATTTGTAGGTTGAATCTTGGTTAACCCAGTA
TGAGTTGAGAACACGGAGATTTGGACAACGACGACCAACACGTTCTTCAGCAACGGATCT
TAAGTTTCTGCTTGGTTTTAATTCGTTAACACCATGAGTCTTTGGTTTACCACCAGTACC
ATCACTAATTGCATAAATATTGAAATAACCATAACCTGAAACCATACTACAAACATATTT
ATTCTCAACAGATGAAGT
sequence update 2001.11.10
Translated Amino Acid sequence
pflrrpralipaevkplnslclwtglqiql*rgslrmal*elstkmts*yl*VESWLTQY
ELRTRRFGQRRPTRSSATDLKFLLGFNSLTP*vfglppvpslia*ilk*p*petilqtyl
fstde


Translated Amino Acid sequence (All Frames)
Frame A:
tfstettgfdtsgg*ts*fsmfvdwftdpvvtwvvtdgivrvin*ddfiifvg*ilvnpv
*venteiwttttntffsngs*vsawf*fvntmslwfttstitncinieitit*nhttnif
ilnr*s


Frame B:
pflrrpralipaevkplnslclwtglqiql*rgslrmal*elstkmts*yl*VESWLTQY
ELRTRRFGQRRPTRSSATDLKFLLGFNSLTP*vfglppvpslia*ilk*p*petilqtyl
fstde


Frame C:
lfygdhgl*yqrrlnllilyvcglvyrsscnvgrygwhcesyqlr*lhnicrlnlg*psm
s*ehgdldnddqhvlqqrilsfclvlir*hheslvyhqyhh*lhky*nnhnlkpyykhiy
sqqmk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-IC1440 (FC-IC1440Q) /CSM/FC-IC/FC-IC1440Q.Seq.d/ 749 0.0
VHI836 (VHI836Q) /CSM/VH/VHI8-B/VHI836Q.Seq.d/ 593 e-169
VFI765 (VFI765Q) /CSM/VF/VFI7-C/VFI765Q.Seq.d/ 593 e-169
VFE550 (VFE550Q) /CSM/VF/VFE5-C/VFE550Q.Seq.d/ 593 e-169
SLG724 (SLG724Q) /CSM/SL/SLG7-A/SLG724Q.Seq.d/ 593 e-169
SLG705 (SLG705Q) /CSM/SL/SLG7-A/SLG705Q.Seq.d/ 593 e-169
SLG566 (SLG566Q) /CSM/SL/SLG5-C/SLG566Q.Seq.d/ 593 e-169
SLE288 (SLE288Q) /CSM/SL/SLE2-D/SLE288Q.Seq.d/ 593 e-169
SLB831 (SLB831Q) /CSM/SL/SLB8-B/SLB831Q.Seq.d/ 593 e-169
SLB702 (SLB702Q) /CSM/SL/SLB7-A/SLB702Q.Seq.d/ 593 e-169

own update 2002.10. 7
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 593 e-166 1
AX537022|AX537022.1 Sequence 623 from Patent WO02064766. 72 3e-20 3
AX489322|AX489322.1 Sequence 6622 from Patent WO02053728. 72 2e-13 2
BI516576|BI516576.1 BB160022B20D09 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160022B20D09 5', mRNA sequence. 60 1e-10 3
BI509704|BI509704.1 BB170019A10B09 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170019A10B09 5', mRNA sequence. 60 2e-10 3
E50132|E50132.1 Porous hollow fiber carrying nucleic acid-immobilized gel, arrangement of the porous hollow fiber and slice thereof. 46 7e-10 3
AX536664|AX536664.1 Sequence 265 from Patent WO02064766. 46 2e-09 3
Z73201|Z73201.1 S.cerevisiae chromosome XII reading frame ORF YLR029c. 46 6e-09 3
D14675|D14675.1 S.cerevisiae gene for ribosomal protein YL10, complete cds. 46 6e-09 3
BU832992|BU832992.1 T040E02 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence. 60 7e-09 2
dna update 2003.12.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q86K01) RecName: Full=60S ribosomal protein L15; &AC116984_54(... 211 6e-54
DQ673399_1(DQ673399|pid:none) Diaphorina citri putative ribosoma... 159 2e-38
AB181483_1(AB181483|pid:none) Bromus inermis BiRP2 mRNA for ribo... 159 4e-38
AM049041_1(AM049041|pid:none) Meladema coriacea mRNA for ribosom... 157 1e-37
EU285001_1(EU285001|pid:none) TSA: Elaeis guineensis EgEfMPOB001... 156 2e-37
AM049039_1(AM049039|pid:none) Dascillus cervinus mRNA for riboso... 156 2e-37
AC090874_14(AC090874|pid:none) Oryza sativa chromosome 3 BAC OJ1... 155 3e-37
AC137610_6(AC137610|pid:none) Oryza sativa (japonica cultivar-gr... 155 3e-37
AP008211_700(AP008211|pid:none) Oryza sativa (japonica cultivar-... 155 3e-37
EF677530_1(EF677530|pid:none) Picea sitchensis clone WS02770_D12... 154 7e-37
protein update 2009. 7. 1
PSORT

psg: 0.75 gvh: 0.27 alm: 0.55 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for FC-IC1440 is nuc

5' end seq. ID FC-IC1440F
5' end seq.
>FC-IC1440F.Seq
ACCTTTTCTACGGAGACCACGGGCTTTGATACCAGCGGAGGTTAAACCTCTTAATTCTCT
ATGTTTGTGGACTGGTTTACAGATCCAGTTGTAACGTGGGTCGTTACGGATGGCATTGTG
AGAGTTATCAACTAAGATGACTTCATAATATTTGTAGGTTGAATCTTGGTTAACCCAGTA
TGAGTTGAGAACACGGAGATTTGGACAACGACGACCAACACGTTCTTCAGCAACGGATCT
TAAGTTTCTGCTTGGTTTTAATTCGTTAACACCATGAGTCTTTGGTTTACCACCAGTACC
ATCACTAATTGCATAAATATTGAAATAACCATAACCTGAAACCATACTACAAACATATTT
ATTCTCAACAGATGAAGTNNNNNNNNNN
Length of 5' end seq. 388
3' end seq. ID FC-IC1440Z
3' end seq.
>FC-IC1440Z.Seq
NNNNNNNNNNACCTTTTCTACGGAGACCACGGGCTTTGATACCAGCGGAGGTTAAACCTC
TTAATTCTCTATGTTTGTGGACTGGTTTACAGATCCAGTTGTAACGTGGGTCGTTACGGA
TGGCATTGTGAGAGTTATCAACTAAGATGACTTCATAATATTTGTAGGTTGAATCTTGGT
TAACCCAGTATGAGTTGAGAACACGGAGATTTGGACAACGACGACCAACACGTTCTTCAG
CAACGGATCTTAAGTTTCTGCTTGGTTTTAATTCGTTAACACCATGAGTCTTTGGTTTAC
CACCAGTACCATCACTAATTGCATAAATATTGAAATAACCATAACCTGAAACCATACTAC
AAACATATTTATTCTCAACAGATGAAGT
Length of 3' end seq. 388
Connected seq. ID FC-IC1440P
Connected seq.
>FC-IC1440P.Seq
ACCTTTTCTACGGAGACCACGGGCTTTGATACCAGCGGAGGTTAAACCTCTTAATTCTCT
ATGTTTGTGGACTGGTTTACAGATCCAGTTGTAACGTGGGTCGTTACGGATGGCATTGTG
AGAGTTATCAACTAAGATGACTTCATAATATTTGTAGGTTGAATCTTGGTTAACCCAGTA
TGAGTTGAGAACACGGAGATTTGGACAACGACGACCAACACGTTCTTCAGCAACGGATCT
TAAGTTTCTGCTTGGTTTTAATTCGTTAACACCATGAGTCTTTGGTTTACCACCAGTACC
ATCACTAATTGCATAAATATTGAAATAACCATAACCTGAAACCATACTACAAACATATTT
ATTCTCAACAGATGAAGT----------ACCTTTTCTACGGAGACCACGGGCTTTGATAC
CAGCGGAGGTTAAACCTCTTAATTCTCTATGTTTGTGGACTGGTTTACAGATCCAGTTGT
AACGTGGGTCGTTACGGATGGCATTGTGAGAGTTATCAACTAAGATGACTTCATAATATT
TGTAGGTTGAATCTTGGTTAACCCAGTATGAGTTGAGAACACGGAGATTTGGACAACGAC
GACCAACACGTTCTTCAGCAACGGATCTTAAGTTTCTGCTTGGTTTTAATTCGTTAACAC
CATGAGTCTTTGGTTTACCACCAGTACCATCACTAATTGCATAAATATTGAAATAACCAT
AACCTGAAACCATACTACAAACATATTTATTCTCAACAGATGAAGT
Length of connected seq. 756
Full length Seq ID FC-IC1440E
Full length Seq.
>FC-IC1440E.Seq
ACCTTTTCTACGGAGACCACGGGCTTTGATACCAGCGGAGGTTAAACCTCTTAATTCTCT
ATGTTTGTGGACTGGTTTACAGATCCAGTTGTAACGTGGGTCGTTACGGATGGCATTGTG
AGAGTTATCAACTAAGATGACTTCATAATATTTGTAGGTTGAATCTTGGTTAACCCAGTA
TGAGTTGAGAACACGGAGATTTGGACAACGACGACCAACACGTTCTTCAGCAACGGATCT
TAAGTTTCTGCTTGGTTTTAATTCGTTAACACCATGAGTCTTTGGTTTACCACCAGTACC
ATCACTAATTGCATAAATATTGAAATAACCATAACCTGAAACCATACTACAAACATATTT
ATTCTCAACAGATGAAGT
Length of full length seq. 378