>FC-IC1431 (FC-IC1431Q) /CSM/FC-IC/FC-IC1431Q.Seq.d/
ACTTAAACCGACACTGGTTAATTGATAGAATATATTAAAGTGTAGAATGAATGATTCTGA
AGGAACTCGGCAAAATAACTCCGTAACTGCGGGAGAAGGAGAGCCTTTGTTGTAAAAAAT
GAAGGTCACAGTAAAGAAGGGGTGGCGACTGTTTAATAAAAACACAGGATTCTGCAAAAT
GACAACATGATGTATAGGGTCTGCGXXXXXXXXXXCGGCCGAGGTACTTAAACCGACACT
GGTTAATTGATAGAATATATTAAAGTGTAGAATGAATGATTCTGAAGGAACTCGGCAAAA
TAACTCCGTAACTGCGGGAGAAGGAGAGCCTTTGTTGTAAAAAATGAAGGTCACAGTAAA
GAAGGGGTGGCGACTGTTTAATAAAAACACAGGATTCTGCAAAATGACAACATGATGTAT
AGGGTCTGCG

t*tdtg*lieyikv*ne*f*rnsak*lrncgrrrafvvkneghskegvatv**KHRILQN
DNMMYRVC---

---RPRYLNRHWLIDRIY*sve*milkelgkitp*lrekeslcckk*rsq*rrggdclik
tqdsak*qhdv*gl

Frame A:
t*tdtg*lieyikv*ne*f*rnsak*lrncgrrrafvvkneghskegvatv**KHRILQN
DNMMYRVC---

---RPRYLNRHWLIDRIY*sve*milkelgkitp*lrekeslcckk*rsq*rrggdclik
tqdsak*qhdv*gl

Frame B:
lkptlvn**nilkcrmndsegtrqnnsvtagegepll*kmkvtvkkgwrlfnkntgfckm
tt*cigsa---

---grgt*tdtg*lieyikv*ne*f*rnsak*lrncgrrrafvvkneghskegvatv**k
hrilqndnmmyrvc

Frame C:
lnrhwlidriy*sve*milkelgkitp*lrekeslcckk*rsq*rrggdcliktqdsak*
qhdv*gl---

---aevlkptlvn**nilkcrmndsegtrqnnsvtagegepll*kmkvtvkkgwrlfnkn
tgfckmtt*cigsa

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1431 (FC-IC1431Q) /CSM/FC-IC/FC-IC1431Q.Seq.d/                   793   0.0
VHB176 (VHB176Q) /CSM/VH/VHB1-D/VHB176Q.Seq.d/                        402   e-111
VFE275 (VFE275Q) /CSM/VF/VFE2-D/VFE275Q.Seq.d/                        402   e-111
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/               402   e-111
CFD643 (CFD643Q) /CSM/CF/CFD6-B/CFD643Q.Seq.d/                        402   e-111
CFA667 (CFA667Q) /CSM/CF/CFA6-C/CFA667Q.Seq.d/                        402   e-111
FC-IC0276 (FC-IC0276Q) /CSM/FC-IC/FC-IC0276Q.Seq.d/                   398   e-110
AFF514 (AFF514Q) /CSM/AF/AFF5-A/AFF514Q.Seq.d/                        365   e-100
VHA636 (VHA636Q) /CSM/VH/VHA6-B/VHA636Q.Seq.d/                        295   3e-79
CHI887 (CHI887Q) /CSM/CH/CHI8-D/CHI887Q.Seq.d/                        274   1e-72

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA, complete sequence.   402   e-108  1
D16466|D16466.1 Dictyostelium discoideum mitochondrial DNA.       402   e-108  1
U21880|U21880.1 Dictyostelium discoideum mitochondrion large subunit rRNA (rrn) gene, mitochondrial gene encoding mitochondrial rRNA, partial sequence.   402   e-108  1
AF295546|AF295546.1 Malawimonas jakobiformis mitochondrial DNA, complete genome.    66   1e-39  4
AB076666|AB076666.1 Oryza sativa (japonica cultivar-group) mitochondrial DNA, section 2/2.    58   5e-30  5
AP000397|AP000397.1 Beta vulgaris mitochondrial genomic DNA, complete sequence, section 2/2.    58   5e-30  4
Z67753|Z67753.1 Odontella sinensis complete chloroplast genome.    80   1e-24  4
AL591974|AL591974.1 Listeria monocytogenes strain EGD, complete genome, segment 2/12.    56   1e-18  4
AL596164|AL596164.1 Listeria innocua Clip11262 complete genome, segment 2/12.    56   5e-18  5
AF494279|AF494279.1 Chaetosphaeridium globosum mitochondrial DNA, complete  genome.    60   7e-18  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001230_1127(CP001230|pid:none) Persephonella marina EX-H1, com...    47   3e-04
AC151709_9(AC151709|pid:none) Medicago truncatula clone mth2-31g...    30   0.058
AC146792_21(AC146792|pid:none) Medicago truncatula clone mth2-32...    36   0.46
AM502234_12(AM502234|pid:none) Leishmania infantum chromosome 16.      35   1.0
CT005255_12(CT005255|pid:none) Leishmania major strain Friedlin,...    35   1.0
BA000001_226(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, c...    30   2.5
AM494953_12(AM494953|pid:none) Leishmania braziliensis chromosom...    33   3.9
CP001100_976(CP001100|pid:none) Chloroherpeton thalassium ATCC 3...    32   5.1
AM085146_11(AM085146|pid:none) Magnetospirillum gryphiswaldense ...    32   5.1
CU928162_3438(CU928162|pid:none) Escherichia coli ED1a chromosom...    32   6.7

 psg: 0.56  gvh: 0.25  alm: 0.67  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for FC-IC1431 is nuc

>FC-IC1431F.Seq
ACTTAAACCGACACTGGTTAATTGATAGAATATATTAAAGTGTAGAATGAATGATTCTGA
AGGAACTCGGCAAAATAACTCCGTAACTGCGGGAGAAGGAGAGCCTTTGTTGTAAAAAAT
GAAGGTCACAGTAAAGAAGGGGTGGCGACTGTTTAATAAAAACACAGGATTCTGCAAAAT
GACAACATGATGTATAGGGTCTGCGNNNNNNNNNN

>FC-IC1431Z.Seq
NNNNNNNNNNCGGCCGAGGTACTTAAACCGACACTGGTTAATTGATAGAATATATTAAAG
TGTAGAATGAATGATTCTGAAGGAACTCGGCAAAATAACTCCGTAACTGCGGGAGAAGGA
GAGCCTTTGTTGTAAAAAATGAAGGTCACAGTAAAGAAGGGGTGGCGACTGTTTAATAAA
AACACAGGATTCTGCAAAATGACAACATGATGTATAGGGTCTGCG

>FC-IC1431P.Seq
ACTTAAACCGACACTGGTTAATTGATAGAATATATTAAAGTGTAGAATGAATGATTCTGA
AGGAACTCGGCAAAATAACTCCGTAACTGCGGGAGAAGGAGAGCCTTTGTTGTAAAAAAT
GAAGGTCACAGTAAAGAAGGGGTGGCGACTGTTTAATAAAAACACAGGATTCTGCAAAAT
GACAACATGATGTATAGGGTCTGCG----------CGGCCGAGGTACTTAAACCGACACT
GGTTAATTGATAGAATATATTAAAGTGTAGAATGAATGATTCTGAAGGAACTCGGCAAAA
TAACTCCGTAACTGCGGGAGAAGGAGAGCCTTTGTTGTAAAAAATGAAGGTCACAGTAAA
GAAGGGGTGGCGACTGTTTAATAAAAACACAGGATTCTGCAAAATGACAACATGATGTAT
AGGGTCTGCG