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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1404
Library FC-IC
(Link to library)
Clone ID FC-IC1404
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08328-1
Original site URL
Representative seq. ID FC-IC1404E
(Link to Original site)
Representative DNA sequence 
>FC-IC1404 (FC-IC1404Q) /CSM/FC-IC/FC-IC1404Q.Seq.d/
ACCAATTATTGCTGGTAGTCCATCAGATATAAGTCAAGCTCAATGTCAAGCATTATTTGA
TCCATCAAATAAATTCTCTTTAACTGATCCAACAAATGTAGGTGTCTACCTTTTAAATCC
AGCTGGATCCAAAGCTGCATTATTAGCTTCACCATTTGGTTTAACTAGTGTTCAAGCTGA
TTTAATTATGAAATATCAATTAGCATTAACATCAACTTTTGT
sequence update 2001.11.10
Translated Amino Acid sequence 
PIIAGSPSDISQAQCQALFDPSNKFSLTDPTNVGVYLLNPAGSKAALLASPFGLTSVQAD
LIMKYQLALTSTF
Translated Amino Acid sequence (All Frames) 
Frame A:
tnycw*siryksssmssii*sik*ilfn*snkcrclpfksswiqsciisftiwfn*css*
fnyeisisininfc


Frame B:
PIIAGSPSDISQAQCQALFDPSNKFSLTDPTNVGVYLLNPAGSKAALLASPFGLTSVQAD
LIMKYQLALTSTF


Frame C:
qlllvvhqi*vklnvkhylihqinsl*liqqm*vstf*iqldpklhy*lhhlv*lvfkli
*l*nin*h*hqll
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1453 (FC-IC1453Q) /CSM/FC-IC/FC-IC1453Q.Seq.d/                   440   e-123
FC-IC1404 (FC-IC1404Q) /CSM/FC-IC/FC-IC1404Q.Seq.d/                   440   e-123
FC-IC1188 (FC-IC1188Q) /CSM/FC-IC/FC-IC1188Q.Seq.d/                   440   e-123
FC-IC0413 (FC-IC0413Q) /CSM/FC-IC/FC-IC0413Q.Seq.d/                   440   e-123
FC-IC0314 (FC-IC0314Q) /CSM/FC-IC/FC-IC0314Q.Seq.d/                   440   e-123
FC-IC0393 (FC-IC0393Q) /CSM/FC-IC/FC-IC0393Q.Seq.d/                   428   e-119
VSA764 (VSA764Q) /CSM/VS/VSA7-C/VSA764Q.Seq.d/                         38   0.053
SLB613 (SLB613Q) /CSM/SL/SLB6-A/SLB613Q.Seq.d/                         38   0.053
SHF593 (SHF593Q) /CSM/SH/SHF5-D/SHF593Q.Seq.d/                         38   0.053
AHM564 (AHM564Q) /CSM/AH/AHM5-C/AHM564Q.Seq.d/                         38   0.053
own update 2002.10. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF238324|AF238324.1 Dictyostelium discoideum lysosomal integral membrane protein II (lmpB) mRNA, complete cds.   440   e-120  1
AC101876|AC101876.1 Mus musculus chromosome 8 clone RP23-367J24 map 8, LOW-PASS SEQUENCE SAMPLING.    36   0.44   2
AC023907|AC023907.2 Homo sapiens chromosome 15 clone RP11-100A21 map 15q21, LOW-PASS SEQUENCE SAMPLING.    36   0.77   2
AC100376|AC100376.1 Mus musculus clone RP23-130K24, LOW-PASS SEQUENCE SAMPLING.    38   1.1    3
AL031154|AL031154.1 S.pombe chromosome II cosmid c1685.            36   1.1    3
AC134252|AC134252.2 Mus musculus chromosome UNK clone RP23-453G5, WORKING DRAFT SEQUENCE, 9 unordered pieces.    36   1.4    4
AL121823|AL121823.12 Human DNA sequence from clone RP13-212L9 on chromosome X.    40   1.4    3
AC144586|AC144586.1 Homo sapiens chromosome 5 clone RP11-1312H2, WORKING DRAFT SEQUENCE, 5 unordered pieces.    32   2.5    5
AC140011|AC140011.1 Homo sapiens chromosome 5 clone RP11-1269M7, WORKING DRAFT SEQUENCE, 11 unordered pieces.    32   2.8    4
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome.    40   2.8    7
dna update 2003.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9BKJ9) RecName: Full=Lysosome membrane protein 2-B; AltName: F...   145   6e-34
(Q55FQ9) RecName: Full=Lysosome membrane protein 2-C; AltName: F...    32   5.4
AF238325_1(AF238325|pid:none) Dictyostelium discoideum lysosomal...    32   5.4
DQ288841_1(DQ288841|pid:none) Chlamydia suis MS04 plasmid pCS un...    32   9.2
protein update 2009. 3. 1
PSORT 

 psg: 0.75  gvh: 0.59  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for FC-IC1404 is cyt
5' end seq. ID FC-IC1404F
5' end seq. 
>FC-IC1404F.Seq
ACCAATTATTGCTGGTAGTCCATCAGATATAAGTCAAGCTCAATGTCAAGCATTATTTGA
TCCATCAAATAAATTCTCTTTAACTGATCCAACAAATGTAGGTGTCTACCTTTTAAATCC
AGCTGGATCCAAAGCTGCATTATTAGCTTCACCATTTGGTTTAACTAGTGTTCAAGCTGA
TTTAATTATGAAATATCAATTAGCATTAACATCAACTTTTGTNNNNNNNNNN
Length of 5' end seq. 232
3' end seq. ID FC-IC1404Z
3' end seq. 
>FC-IC1404Z.Seq
NNNNNNNNNNACCAATTATTGCTGGTAGTCCATCAGATATAAGTCAAGCTCAATGTCAAG
CATTATTTGATCCATCAAATAAATTCTCTTTAACTGATCCAACAAATGTAGGTGTCTACC
TTTTAAATCCAGCTGGATCCAAAGCTGCATTATTAGCTTCACCATTTGGTTTAACTAGTG
TTCAAGCTGATTTAATTATGAAATATCAATTAGCATTAACATCAACTTTTGT
Length of 3' end seq. 232
Connected seq. ID FC-IC1404P
Connected seq. 
>FC-IC1404P.Seq
ACCAATTATTGCTGGTAGTCCATCAGATATAAGTCAAGCTCAATGTCAAGCATTATTTGA
TCCATCAAATAAATTCTCTTTAACTGATCCAACAAATGTAGGTGTCTACCTTTTAAATCC
AGCTGGATCCAAAGCTGCATTATTAGCTTCACCATTTGGTTTAACTAGTGTTCAAGCTGA
TTTAATTATGAAATATCAATTAGCATTAACATCAACTTTTGT----------ACCAATTA
TTGCTGGTAGTCCATCAGATATAAGTCAAGCTCAATGTCAAGCATTATTTGATCCATCAA
ATAAATTCTCTTTAACTGATCCAACAAATGTAGGTGTCTACCTTTTAAATCCAGCTGGAT
CCAAAGCTGCATTATTAGCTTCACCATTTGGTTTAACTAGTGTTCAAGCTGATTTAATTA
TGAAATATCAATTAGCATTAACATCAACTTTTGT
Length of connected seq. 444
Full length Seq ID FC-IC1404E
Full length Seq. 
>FC-IC1404E.Seq
ACCAATTATTGCTGGTAGTCCATCAGATATAAGTCAAGCTCAATGTCAAGCATTATTTGA
TCCATCAAATAAATTCTCTTTAACTGATCCAACAAATGTAGGTGTCTACCTTTTAAATCC
AGCTGGATCCAAAGCTGCATTATTAGCTTCACCATTTGGTTTAACTAGTGTTCAAGCTGA
TTTAATTATGAAATATCAATTAGCATTAACATCAACTTTTGT
Length of full length seq. 222