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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1348
Library FC-IC
(Link to library)
Clone ID FC-IC1348
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13052-1
Original site URL
Representative seq. ID FC-IC1348E
(Link to Original site)
Representative DNA sequence 
>FC-IC1348 (FC-IC1348Q) /CSM/FC-IC/FC-IC1348Q.Seq.d/
ACCAAATAATAAACTTTATAATGAATTCTTGAAATGTTTAAATCTTTTCAGTCAAGAGAT
TATTAGTCGCACAGAATTGGTATTATTGGTAAAAGATATTTTATTACCACGTTTACCAGC
ATTATTTGAATGGTTCAAGTCATTTATTGGTGTTGATGATCAATCTATAGAACTATTGGA
ACGTATGGAACAATCATCACCAGGCAAACAAAATAATGCATGGTCAGAGATTGATTTCAC
CACATGTAAACGTTTGGGACCAAGTTATCGTGCATTACCAAAGAATTATCCACAACCAAG
ATGT
sequence update 2001.11.10
Translated Amino Acid sequence 
PNNKLYNEFLKCLNLFSQEIISRTELVLLVKDILLPRLPALFEWFKSFIGVDDQSIELLE
RMEQSSPGKQNNAWSEIDFTTCKRLGPSYRALPKNYPQPRC
Translated Amino Acid sequence (All Frames) 
Frame A:
tk**tl**ilemfksfqsrdy*shrigiigkryfittftsii*mvqviywc**siyrtig
tygtiitrqtk*cmvrd*fhhm*tfgtklscitkelsttkm


Frame B:
PNNKLYNEFLKCLNLFSQEIISRTELVLLVKDILLPRLPALFEWFKSFIGVDDQSIELLE
RMEQSSPGKQNNAWSEIDFTTCKRLGPSYRALPKNYPQPRC


Frame C:
qiinfimns*nv*ifsvkrllvaqnwyyw*kifyyhvyqhylngsshllvlminl*nywn
vwnnhhqankimhgqrlisphvnvwdqvivhyqriihnqd
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1348 (FC-IC1348Q) /CSM/FC-IC/FC-IC1348Q.Seq.d/                   603   e-172
SHJ401 (SHJ401Q) /CSM/SH/SHJ4-A/SHJ401Q.Seq.d/                        549   e-156
SSL146 (SSL146Q) /CSM/SS/SSL1-B/SSL146Q.Seq.d/                         42   0.005
SSK336 (SSK336Q) /CSM/SS/SSK3-B/SSK336Q.Seq.d/                         42   0.005
SSI701 (SSI701Q) /CSM/SS/SSI7-A/SSI701Q.Seq.d/                         42   0.005
SSH317 (SSH317Q) /CSM/SS/SSH3-A/SSH317Q.Seq.d/                         42   0.005
SSG252 (SSG252Q) /CSM/SS/SSG2-C/SSG252Q.Seq.d/                         42   0.005
SSE387 (SSE387Q) /CSM/SS/SSE3-D/SSE387Q.Seq.d/                         42   0.005
SSD281 (SSD281Q) /CSM/SS/SSD2-D/SSD281Q.Seq.d/                         42   0.005
VSE761 (VSE761Q) /CSM/VS/VSE7-C/VSE761Q.Seq.d/                         38   0.074
own update 2002.11.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC110598|AC110598.2 Homo sapiens chromosome 18 clone CTD-3066L17 map 18, LOW-PASS SEQUENCE SAMPLING.    40   0.003  2
AC135972|AC135972.11 Homo sapiens chromosome 17 clone CTD-2530H17 map 17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    48   0.067  1
AC145161|AC145161.1 Homo sapiens chromosome 17 clone XXfos-802094E10 map 17, WORKING DRAFT SEQUENCE, 9 unordered pieces.    48   0.067  1
BF986941|BF986941.1 QV3-GN0058-041000-357-c02 GN0058 Homo sapiens cDNA, mRNA sequence.    48   0.067  1
AC004098|AC004098.1 Homo sapiens chromosome 17, clone HCIT305D20, complete sequence.    48   0.067  1
AC138687|AC138687.2 Homo sapiens chromosome 17 clone RP11-297E22 map 17, WORKING DRAFT SEQUENCE, 1 ordered piece.    48   0.067  1
AC139026|AC139026.4 Homo sapiens chromosome 17, clone CTD-2514I13, complete sequence.    48   0.067  1
AC046170|AC046170.6 Homo sapiens chromosome 10, clone RP11-219F9, complete sequence.    48   0.067  1
AC022298|AC022298.31 Mus musculus  BAC RP23-423C8 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence.    36   0.20   4
AC137044|AC137044.1 Rattus norvegicus clone CH230-unknown, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    46   0.27   1
dna update 2003.12.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L38621_1(L38621|pid:none) Mus musculus clone pVZmSin3A9 Sin3A9 (...    88   1e-16
AF418569_1(AF418569|pid:none) Homo sapiens MSIN3A mRNA, complete...    88   1e-16
L36831_1(L36831|pid:none) Mus musculus transcriptional regulator...    88   1e-16
L38620_1(L38620|pid:none) Mus musculus clone pVZmSin3A Sin3A (Si...    88   1e-16
U22394_1(U22394|pid:none) Mus musculus mSin3A (sin3A) mRNA, comp...    88   1e-16
(Q60520) RecName: Full=Paired amphipathic helix protein Sin3a; A...    88   1e-16
AF154112_1(AF154112|pid:none) Xenopus laevis transcription co-re...    87   1e-16
BC170554_1(BC170554|pid:none) Xenopus laevis cDNA clone MGC:1972...    86   4e-16
BC139856_1(BC139856|pid:none) Danio rerio zgc:162128, mRNA (cDNA...    86   4e-16
BC121315_1(BC121315|pid:none) Xenopus tropicalis SIN3 homolog B,...    85   9e-16
protein update 2009. 7. 1
PSORT 

 psg: 0.70  gvh: 0.59  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for FC-IC1348 is cyt
5' end seq. ID FC-IC1348F
5' end seq. 
>FC-IC1348F.Seq
ACCAAATAATAAACTTTATAATGAATTCTTGAAATGTTTAAATCTTTTCAGTCAAGAGAT
TATTAGTCGCACAGAATTGGTATTATTGGTAAAAGATATTTTATTACCACGTTTACCAGC
ATTATTTGAATGGTTCAAGTCATTTATTGGTGTTGATGATCAATCTATAGAACTATTGGA
ACGTATGGAACAATCATCACCAGGCAAACAAAATAATGCATGGTCAGAGATTGATTTCAC
CACATGTAAACGTTTGGGACCAAGTTATCGTGCATTACCAAAGAATTATCCACAACCAAG
ATGTNNNNNNNNNN
Length of 5' end seq. 314
3' end seq. ID FC-IC1348Z
3' end seq. 
>FC-IC1348Z.Seq
NNNNNNNNNNACCAAATAATAAACTTTATAATGAATTCTTGAAATGTTTAAATCTTTTCA
GTCAAGAGATTATTAGTCGCACAGAATTGGTATTATTGGTAAAAGATATTTTATTACCAC
GTTTACCAGCATTATTTGAATGGTTCAAGTCATTTATTGGTGTTGATGATCAATCTATAG
AACTATTGGAACGTATGGAACAATCATCACCAGGCAAACAAAATAATGCATGGTCAGAGA
TTGATTTCACCACATGTAAACGTTTGGGACCAAGTTATCGTGCATTACCAAAGAATTATC
CACAACCAAGATGT
Length of 3' end seq. 314
Connected seq. ID FC-IC1348P
Connected seq. 
>FC-IC1348P.Seq
ACCAAATAATAAACTTTATAATGAATTCTTGAAATGTTTAAATCTTTTCAGTCAAGAGAT
TATTAGTCGCACAGAATTGGTATTATTGGTAAAAGATATTTTATTACCACGTTTACCAGC
ATTATTTGAATGGTTCAAGTCATTTATTGGTGTTGATGATCAATCTATAGAACTATTGGA
ACGTATGGAACAATCATCACCAGGCAAACAAAATAATGCATGGTCAGAGATTGATTTCAC
CACATGTAAACGTTTGGGACCAAGTTATCGTGCATTACCAAAGAATTATCCACAACCAAG
ATGT----------ACCAAATAATAAACTTTATAATGAATTCTTGAAATGTTTAAATCTT
TTCAGTCAAGAGATTATTAGTCGCACAGAATTGGTATTATTGGTAAAAGATATTTTATTA
CCACGTTTACCAGCATTATTTGAATGGTTCAAGTCATTTATTGGTGTTGATGATCAATCT
ATAGAACTATTGGAACGTATGGAACAATCATCACCAGGCAAACAAAATAATGCATGGTCA
GAGATTGATTTCACCACATGTAAACGTTTGGGACCAAGTTATCGTGCATTACCAAAGAAT
TATCCACAACCAAGATGT
Length of connected seq. 608
Full length Seq ID FC-IC1348E
Full length Seq. 
>FC-IC1348E.Seq
ACCAAATAATAAACTTTATAATGAATTCTTGAAATGTTTAAATCTTTTCAGTCAAGAGAT
TATTAGTCGCACAGAATTGGTATTATTGGTAAAAGATATTTTATTACCACGTTTACCAGC
ATTATTTGAATGGTTCAAGTCATTTATTGGTGTTGATGATCAATCTATAGAACTATTGGA
ACGTATGGAACAATCATCACCAGGCAAACAAAATAATGCATGGTCAGAGATTGATTTCAC
CACATGTAAACGTTTGGGACCAAGTTATCGTGCATTACCAAAGAATTATCCACAACCAAG
ATGT
Length of full length seq. 304