FC-IC1321
Library FC-IC
(Link to library)
Clone ID FC-IC1321
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15335-1
Original site URL
Representative seq. ID FC-IC1321E
(Link to Original site)
Representative DNA sequence
>FC-IC1321 (FC-IC1321Q) /CSM/FC-IC/FC-IC1321Q.Seq.d/
AAGAAACTTGTTTATTAGATATTTTAGATACTGCTGGTCAAGAGGAATACTCTGCAATGA
GAGACCAATATATGAGAACTGGTCAAGGTTTCCTTTGTGTCTACTCTATCACTTCAAGAT
CATCATTTGATGAAATTGCATCATTCCGTGAACAAATTCTTAGAGTTAAGGATAAGGATA
GAGT
sequence update 2001.11.10
Translated Amino Acid sequence
ETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDR


Translated Amino Acid sequence (All Frames)
Frame A:
kklvy*if*illvkrntlq*etni*elvkvsfvstlslqdhhlmklhhsvnkflelriri
e


Frame B:
rnlfiryfrycwsrgilcnerpiyenwsrfplcllyhfkiii**nciip*tns*s*g*g*
s


Frame C:
ETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDR


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ548 (VSJ548Q) /CSM/VS/VSJ5-B/VSJ548Q.Seq.d/ 365 e-100
VSH412 (VSH412Q) /CSM/VS/VSH4-A/VSH412Q.Seq.d/ 365 e-100
VSF668 (VSF668Q) /CSM/VS/VSF6-C/VSF668Q.Seq.d/ 365 e-100
VSD622 (VSD622Q) /CSM/VS/VSD6-A/VSD622Q.Seq.d/ 365 e-100
VSB273 (VSB273Q) /CSM/VS/VSB2-D/VSB273Q.Seq.d/ 365 e-100
SSM392 (SSM392Q) /CSM/SS/SSM3-D/SSM392Q.Seq.d/ 365 e-100
SSL172 (SSL172Q) /CSM/SS/SSL1-C/SSL172Q.Seq.d/ 365 e-100
SSJ875 (SSJ875Q) /CSM/SS/SSJ8-D/SSJ875Q.Seq.d/ 365 e-100
SSC774 (SSC774Q) /CSM/SS/SSC7-D/SSC774Q.Seq.d/ 365 e-100
SLI875 (SLI875Q) /CSM/SL/SLI8-D/SLI875Q.Seq.d/ 365 e-100

own update 2001.11.11
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

Z11533|Z11533.1 D.discoideum rasG gene. 365 1e-97 1
J04160|J04160.1 D.discoideum ras protein (DdrasG) gene, complete cds. 365 1e-97 1
Z11804|Z11804.1 D.discoideum ras gene. 186 7e-44 1
M62610|M62610.1 D.disocoideum ras mRNA, complete cds. 186 7e-44 1
M96622|M96622.1 Dictyostelium discoideum rasB mRNA, complete cds. 103 8e-19 1
CA767542|CA767542.2 AF53-Rpf_12_H20_T7_076.ab1 IRRI Drought Stress Panicle Library Oryza sativa (indica cultivar-group) cDNA clone C0004412 5' similar to Ras-like protein 1, mRNA sequence. 68 7e-14 2
AF177670|AF177670.1 Candida albicans Ras1p (RAS1) gene, complete cds. 48 9e-10 2
X54291|X54291.1 Dictyostelium discoideum rap1 gene for ras-related gene product. 50 1e-09 3
AF342669|AF342669.1 Sclerotinia sclerotiorum strain W3-A3-5 ras protein (ras) gene, partial cds. 64 1e-09 2
AF342668|AF342668.1 Sclerotinia sclerotiorum strain W3-A3-2 ras protein (ras) gene, partial cds. 64 1e-09 2
dna update 2003.12.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

M62610_1(M62610|pid:none) D.disocoideum ras mRNA, complete cds. 121 9e-27
TVDORS(A01371)transforming protein ras - slime mold (Dictyosteli... 121 9e-27
(P03967) RecName: Full=Ras-like protein rasD; AltName: Full=Tran... 121 9e-27
S58220(S58220) transforming protein ras-2 - Dictyostelium minutu... 120 2e-26
JC6328(JC6328)Ras2 protein - slime mold (Dictyostelium discoideum) 120 2e-26
(P32252) RecName: Full=Ras-like protein rasB; Flags: Precursor; ... 103 2e-21
(P08647) RecName: Full=Ras-like protein 1; Flags: Precursor; &C... 100 2e-20
X03771_1(X03771|pid:none) Yeast (Schizosaccharomyces pombe) RAS ... 100 2e-20
TVBYSR(A22715)transforming protein ras - fission yeast (Schizos... 100 3e-20
(O42785) RecName: Full=Ras-like protein; AltName: Full=Ct-Ras; F... 100 3e-20
protein update 2009. 7. 1
PSORT

psg: 0.75 gvh: 0.49 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
32.0 %: nuclear
24.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for FC-IC1321 is cyt

5' end seq. ID FC-IC1321F
5' end seq.
>FC-IC1321F.Seq
AAGAAACTTGTTTATTAGATATTTTAGATACTGCTGGTCAAGAGGAATACTCTGCAATGA
GAGACCAATATATGAGAACTGGTCAAGGTTTCCTTTGTGTCTACTCTATCACTTCAAGAT
CATCATTTGATGAAATTGCATCATTCCGTGAACAAATTCTTAGAGTTAAGGATAAGGATA
GAGTNNNNNNNNNN
Length of 5' end seq. 194
3' end seq. ID FC-IC1321Z
3' end seq.
>FC-IC1321Z.Seq
NNNNNNNNNNAAGAAACTTGTTTATTAGATATTTTAGATACTGCTGGTCAAGAGGAATAC
TCTGCAATGAGAGACCAATATATGAGAACTGGTCAAGGTTTCCTTTGTGTCTACTCTATC
ACTTCAAGATCATCATTTGATGAAATTGCATCATTCCGTGAACAAATTCTTAGAGTTAAG
GATAAGGATAGAGT
Length of 3' end seq. 194
Connected seq. ID FC-IC1321P
Connected seq.
>FC-IC1321P.Seq
AAGAAACTTGTTTATTAGATATTTTAGATACTGCTGGTCAAGAGGAATACTCTGCAATGA
GAGACCAATATATGAGAACTGGTCAAGGTTTCCTTTGTGTCTACTCTATCACTTCAAGAT
CATCATTTGATGAAATTGCATCATTCCGTGAACAAATTCTTAGAGTTAAGGATAAGGATA
GAGT----------AAGAAACTTGTTTATTAGATATTTTAGATACTGCTGGTCAAGAGGA
ATACTCTGCAATGAGAGACCAATATATGAGAACTGGTCAAGGTTTCCTTTGTGTCTACTC
TATCACTTCAAGATCATCATTTGATGAAATTGCATCATTCCGTGAACAAATTCTTAGAGT
TAAGGATAAGGATAGAGT
Length of connected seq. 368
Full length Seq ID FC-IC1321E
Full length Seq.
>FC-IC1321E.Seq
AAGAAACTTGTTTATTAGATATTTTAGATACTGCTGGTCAAGAGGAATACTCTGCAATGA
GAGACCAATATATGAGAACTGGTCAAGGTTTCCTTTGTGTCTACTCTATCACTTCAAGAT
CATCATTTGATGAAATTGCATCATTCCGTGAACAAATTCTTAGAGTTAAGGATAAGGATA
GAGT
Length of full length seq. 184