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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1318
Library FC-IC
(Link to library)
Clone ID FC-IC1318
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14980-1
Original site URL
Representative seq. ID FC-IC1318E
(Link to Original site)
Representative DNA sequence 
>FC-IC1318 (FC-IC1318Q) /CSM/FC-IC/FC-IC1318Q.Seq.d/
GATGGCTTAAAGGAAAATGCCGAGAATGAAGTTTCCGATGAAGAGTTTGCTAAACGTGAA
TCTTACTTCCCAGATGATACTCCAACCACCAAAGAAGCTTTCCTCTACAGAAAAATGTTT
GAAGCCATCTATCCAGGTAAAGAATGTATGGAAACCGTTCAACGTTGGATTCCAACTTGG
GGTGCCTCACAAGATCCATCAGGTAGAGCTCAAAAAGTTCATTTAAGT
sequence update 2001.11.10
Translated Amino Acid sequence 
DGLKENAENEVSDEEFAKRESYFPDDTPTTKEAFLYRKMFEAIYPGKECMETVQRWIPTW
GASQDPSGRAQKVHLS
Translated Amino Acid sequence (All Frames) 
Frame A:
DGLKENAENEVSDEEFAKRESYFPDDTPTTKEAFLYRKMFEAIYPGKECMETVQRWIPTW
GASQDPSGRAQKVHLS


Frame B:
ma*rkmprmkfpmksllnvnltsqmilqppkklsstekclkpsiqvknvwkpfnvgfqlg
vphkihqvelkkfi*


Frame C:
wlkgkcre*sfr*rvc*t*illpr*ysnhqrsfplqknv*shlsr*rmygnrstldsnlg
cltrsir*sskssfk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1318 (FC-IC1318Q) /CSM/FC-IC/FC-IC1318Q.Seq.d/                   452   e-126
FC-AB16 (FC-AB16Q) /CSM/FC/FC-AB/FC-AB16Q.Seq.d/                      452   e-126
AFF157 (AFF157Q) /CSM/AF/AFF1-C/AFF157Q.Seq.d/                        452   e-126
VFN295 (VFN295Q) /CSM/VF/VFN2-D/VFN295Q.Seq.d/                        438   e-122
FC-IC1326 (FC-IC1326Q) /CSM/FC-IC/FC-IC1326Q.Seq.d/                   414   e-115
VHG717 (VHG717Q) /CSM/VH/VHG7-A/VHG717Q.Seq.d/                        198   2e-50
VHH419 (VHH419Q) /CSM/VH/VHH4-A/VHH419Q.Seq.d/                        161   5e-39
VSD238 (VSD238Q) /CSM/VS/VSD2-B/VSD238Q.Seq.d/                         36   0.21
VSD218 (VSD218Q) /CSM/VS/VSD2-A/VSD218Q.Seq.d/                         36   0.21
VHE557 (VHE557Q) /CSM/VH/VHE5-C/VHE557Q.Seq.d/                         36   0.21
own update 2002.10. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BE805317|BE805317.1 ss41a11.y1 Gm-c1061 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1061-1269 5' similar to TR:Q42792 Q42792 ASPARAGINE SYNTHETASE ;, mRNA sequence.    40   0.001  2
AW832324|AW832324.1 sm07g08.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-8247 5' similar to TR:Q42792 Q42792 ASPARAGINE SYNTHETASE ;, mRNA sequence.    40   0.001  2
AW760593|AW760593.1 sl52d03.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-4926 5' similar to TR:Q42792 Q42792 ASPARAGINE SYNTHETASE ;, mRNA sequence.    40   0.001  2
AI443448|AI443448.1 sa33g10.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-1147 5' similar to TR:Q42792 Q42792 ASPARAGINE SYNTHETASE ;, mRNA sequence.    40   0.001  2
BF325387|BF325387.1 su21a09.y1 Gm-c1066 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1066-1962 5' similar to TR:Q42792 Q42792 ASPARAGINE SYNTHETASE ;, mRNA sequence.    40   0.001  2
BM525180|BM525180.1 sal20g05.y1 Gm-c1059 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1059-2985 5' similar to TR:Q42792 Q42792 ASPARAGINE SYNTHETASE ;, mRNA sequence.    40   0.001  2
BM521514|BM521514.1 sal15g12.y1 Gm-c1057 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1057-5328 5' similar to TR:Q42792 Q42792 ASPARAGINE SYNTHETASE ;, mRNA sequence.    40   0.001  2
AW830629|AW830629.1 sm04e09.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-7937 5' similar to TR:Q42792 Q42792 ASPARAGINE SYNTHETASE ;, mRNA sequence.    40   0.002  2
BF009984|BF009984.1 ss89d08.y1 Gm-c1064 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1064-1288 5' similar to TR:Q42792 Q42792 ASPARAGINE SYNTHETASE ;, mRNA sequence.    40   0.002  2
BI470022|BI470022.1 saf46f06.y3 Gm-c1077 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1077-1787 5' similar to TR:Q42792 Q42792 ASPARAGINE SYNTHETASE ;, mRNA sequence.    40   0.002  2
dna update 2003.12.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR382122_442(CR382122|pid:none) Kluyveromyces lactis strain NRRL...    89   6e-17
(P78753) RecName: Full=Probable asparagine synthetase [glutamine...    84   2e-15
(P49089) RecName: Full=Asparagine synthetase [glutamine-hydrolyz...    84   2e-15
(P49090) RecName: Full=Asparagine synthetase [glutamine-hydrolyz...    82   6e-15
CP000685_2242(CP000685|pid:none) Flavobacterium johnsoniae UW101...    81   1e-14
CR380955_449(CR380955|pid:none) Candida glabrata strain CBS138 c...    80   2e-14
AY692858_1(AY692858|pid:none) Saccharomyces cerevisiae clone FLH...    80   3e-14
AE017348_297(AE017348|pid:none) Cryptococcus neoformans var. neo...    78   8e-14
FN392321_690(FN392321|pid:none) Pichia pastoris GS115 chromosome...    76   4e-13
CR382134_414(CR382134|pid:none) Debaryomyces hansenii strain CBS...    76   4e-13
protein update 2009. 7. 1
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.62  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: cytoskeletal
	 12.0 %: mitochondrial

>> prediction for FC-IC1318 is cyt
5' end seq. ID FC-IC1318F
5' end seq. 
>FC-IC1318F.Seq
GATGGCTTAAAGGAAAATGCCGAGAATGAAGTTTCCGATGAAGAGTTTGCTAAACGTGAA
TCTTACTTCCCAGATGATACTCCAACCACCAAAGAAGCTTTCCTCTACAGAAAAATGTTT
GAAGCCATCTATCCAGGTAAAGAATGTATGGAAACCGTTCAACGTTGGATTCCAACTTGG
GGTGCCTCACAAGATCCATCAGGTAGAGCTCAAAAAGTTCATTTAAGTNNNNNNNNNN
Length of 5' end seq. 238
3' end seq. ID FC-IC1318Z
3' end seq. 
>FC-IC1318Z.Seq
NNNNNNNNNNGATGGCTTAAAGGAAAATGCCGAGAATGAAGTTTCCGATGAAGAGTTTGC
TAAACGTGAATCTTACTTCCCAGATGATACTCCAACCACCAAAGAAGCTTTCCTCTACAG
AAAAATGTTTGAAGCCATCTATCCAGGTAAAGAATGTATGGAAACCGTTCAACGTTGGAT
TCCAACTTGGGGTGCCTCACAAGATCCATCAGGTAGAGCTCAAAAAGTTCATTTAAGT
Length of 3' end seq. 238
Connected seq. ID FC-IC1318P
Connected seq. 
>FC-IC1318P.Seq
GATGGCTTAAAGGAAAATGCCGAGAATGAAGTTTCCGATGAAGAGTTTGCTAAACGTGAA
TCTTACTTCCCAGATGATACTCCAACCACCAAAGAAGCTTTCCTCTACAGAAAAATGTTT
GAAGCCATCTATCCAGGTAAAGAATGTATGGAAACCGTTCAACGTTGGATTCCAACTTGG
GGTGCCTCACAAGATCCATCAGGTAGAGCTCAAAAAGTTCATTTAAGT----------GA
TGGCTTAAAGGAAAATGCCGAGAATGAAGTTTCCGATGAAGAGTTTGCTAAACGTGAATC
TTACTTCCCAGATGATACTCCAACCACCAAAGAAGCTTTCCTCTACAGAAAAATGTTTGA
AGCCATCTATCCAGGTAAAGAATGTATGGAAACCGTTCAACGTTGGATTCCAACTTGGGG
TGCCTCACAAGATCCATCAGGTAGAGCTCAAAAAGTTCATTTAAGT
Length of connected seq. 456
Full length Seq ID FC-IC1318E
Full length Seq. 
>FC-IC1318E.Seq
GATGGCTTAAAGGAAAATGCCGAGAATGAAGTTTCCGATGAAGAGTTTGCTAAACGTGAA
TCTTACTTCCCAGATGATACTCCAACCACCAAAGAAGCTTTCCTCTACAGAAAAATGTTT
GAAGCCATCTATCCAGGTAAAGAATGTATGGAAACCGTTCAACGTTGGATTCCAACTTGG
GGTGCCTCACAAGATCCATCAGGTAGAGCTCAAAAAGTTCATTTAAGT
Length of full length seq. 228