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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1278
Library FC-IC
(Link to library)
Clone ID FC-IC1278
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12354-1
Original site URL
Representative seq. ID FC-IC1278E
(Link to Original site)
Representative DNA sequence 
>FC-IC1278 (FC-IC1278Q) /CSM/FC-IC/FC-IC1278Q.Seq.d/
ACGGCTTCTAATGCTTCATTTTCATTTGCATCATTATCAAATGTATACAATTCTGCTATA
TAATAATTGATGATACGACTATCCAATGATCTTGAACAACTTTTACCCAAAACATAACCA
GATTGAGTATTATCATGAACAACTGAATAAGTGACCCACAAACCCATTGTAATAAAACCA
AATAATAAAAATATTGNTAAAACATATGACCAATGAAGACGTCTTAATACTGATCTAAGT
GATTTCTTATTTAAATTTCTTTTACTCTTTCCATCCCAACCATATCCTTTATTATTATTA
CTAATACTATTTTCAATTAATGGT
sequence update 2001.11.10
Translated Amino Acid sequence 
tasnasfsfaslsnvynsai**lmirlsndleqllpkt*pd*vls*tte*vthkpivikp
nnknixktydq*RRLNTDLSDFLFKFLLLFPSQPYPLLLLLILFSING
Translated Amino Acid sequence (All Frames) 
Frame A:
tasnasfsfaslsnvynsai**lmirlsndleqllpkt*pd*vls*tte*vthkpivikp
nnknixktydq*RRLNTDLSDFLFKFLLLFPSQPYPLLLLLILFSING


Frame B:
rllmlhfhlhhyqmytillynn**ydypmilnnfypkhnqieyyheqlnk*ptnpl**nq
iikilxkhmtnedvlili*visylnffysfhpnhilyyyy*yyfqlm


Frame C:
gf*cfificiiikciqfcyiiiddttiq*s*ttftqnitrlsiimnn*isdpqthcnktk
**kyx*ni*pmkts*y*sk*fli*isftlsiptisfiiitntifn*w
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1278 (FC-IC1278Q) /CSM/FC-IC/FC-IC1278Q.Seq.d/                   636   0.0
FC-IC0528 (FC-IC0528Q) /CSM/FC-IC/FC-IC0528Q.Seq.d/                   636   0.0
FC-IC0456 (FC-IC0456Q) /CSM/FC-IC/FC-IC0456Q.Seq.d/                   636   0.0
FC-IC0374 (FC-IC0374Q) /CSM/FC-IC/FC-IC0374Q.Seq.d/                   620   e-177
CHL106 (CHL106Q) /CSM/CH/CHL1-A/CHL106Q.Seq.d/                        617   e-176
VFM132 (VFM132Q) /CSM/VF/VFM1-B/VFM132Q.Seq.d/                        252   3e-66
AHH667 (AHH667Q) /CSM/AH/AHH6-C/AHH667Q.Seq.d/                         54   1e-06
VSJ354 (VSJ354Q) /CSM/VS/VSJ3-C/VSJ354Q.Seq.d/                         46   3e-04
VSA276 (VSA276Q) /CSM/VS/VSA2-D/VSA276Q.Seq.d/                         42   0.005
VHM766 (VHM766Q) /CSM/VH/VHM7-C/VHM766Q.Seq.d/                         42   0.005
own update 2002.10. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    42   7e-08  12
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    38   7e-08  9
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    42   1e-06  14
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.    42   1e-06  6
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           40   2e-06  14
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    38   2e-06  11
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    38   3e-06  11
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    36   6e-06  9
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    40   7e-06  12
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    36   7e-06  10
dna update 2003.12.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB187035_1(AB187035|pid:none) Dictyostelium discoideum tmcB mRNA...   150   1e-35
AL844509_243(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    34   1.8
CT573326_625(CT573326|pid:none) Pseudomonas entomophila str. L48...    33   3.1
CP000462_1168(CP000462|pid:none) Aeromonas hydrophila subsp. hyd...    33   4.0
(Q6FTL7) RecName: Full=Conserved oligomeric Golgi complex subuni...    32   6.9
BA000026_516(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    32   6.9
AL034560_16(AL034560|pid:none) Plasmodium falciparum MAL3P8, com...    32   6.9
CP000527_2224(CP000527|pid:none) Desulfovibrio vulgaris subsp. v...    32   9.0
protein update 2009. 7. 1
PSORT 

 psg: 0.89  gvh: 0.66  alm: 17.64  top: 0.53  tms: -0.07  mit: 0.36  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: plasma membrane

>> prediction for FC-IC1278 is cyt
5' end seq. ID FC-IC1278F
5' end seq. 
>FC-IC1278F.Seq
ACGGCTTCTAATGCTTCATTTTCATTTGCATCATTATCAAATGTATACAATTCTGCTATA
TAATAATTGATGATACGACTATCCAATGATCTTGAACAACTTTTACCCAAAACATAACCA
GATTGAGTATTATCATGAACAACTGAATAAGTGACCCACANACCCATTGTAATAAAACCA
AATAATAAAAATATTGCTAAAACATATGACCAATGAAGACGTCTTAATACTGATCTAAGT
GATTTCTTATTTAAATTTCTTTTACTCTTTCCATCCCAACCATATCCTTTATTATTATTA
CTAATACTATTTTCAATTAATGGTNNNNNNNNNN
Length of 5' end seq. 334
3' end seq. ID FC-IC1278Z
3' end seq. 
>FC-IC1278Z.Seq
NNNNNNNNNNACGGNTTCTAATGCTTCATTTTCATTTGCATCATTATCAAATGTATACAA
TTCTGCTATATAATAATTGATGATACGACTATCCAATGATCTTGAACNACTTTTACCCAA
AACATAACCAGATTGAGTATTATCATGAACAACTGAATAAGTGACCCACAAACCCATTGT
AATAAAACCAAATAATAAAAATATTGGTAAAACATATGACCAATGAAGACGTCTTAATAC
TGATCTAAGTGATTTCTTATTTAAATTTCTTTTACTCTTTCCATCCCAACCATATCCTTT
ATTATTATTACTAATACTATTTTCAATTAATGGT
Length of 3' end seq. 334
Connected seq. ID FC-IC1278P
Connected seq. 
>FC-IC1278P.Seq
ACGGCTTCTAATGCTTCATTTTCATTTGCATCATTATCAAATGTATACAATTCTGCTATA
TAATAATTGATGATACGACTATCCAATGATCTTGAACAACTTTTACCCAAAACATAACCA
GATTGAGTATTATCATGAACAACTGAATAAGTGACCCACANACCCATTGTAATAAAACCA
AATAATAAAAATATTGCTAAAACATATGACCAATGAAGACGTCTTAATACTGATCTAAGT
GATTTCTTATTTAAATTTCTTTTACTCTTTCCATCCCAACCATATCCTTTATTATTATTA
CTAATACTATTTTCAATTAATGGT----------ACGGNTTCTAATGCTTCATTTTCATT
TGCATCATTATCAAATGTATACAATTCTGCTATATAATAATTGATGATACGACTATCCAA
TGATCTTGAACNACTTTTACCCAAAACATAACCAGATTGAGTATTATCATGAACAACTGA
ATAAGTGACCCACAAACCCATTGTAATAAAACCAAATAATAAAAATATTGGTAAAACATA
TGACCAATGAAGACGTCTTAATACTGATCTAAGTGATTTCTTATTTAAATTTCTTTTACT
CTTTCCATCCCAACCATATCCTTTATTATTATTACTAATACTATTTTCAATTAATGGT
Length of connected seq. 648
Full length Seq ID FC-IC1278E
Full length Seq. 
>FC-IC1278E.Seq
ACGGCTTCTAATGCTTCATTTTCATTTGCATCATTATCAAATGTATACAATTCTGCTATA
TAATAATTGATGATACGACTATCCAATGATCTTGAACAACTTTTACCCAAAACATAACCA
GATTGAGTATTATCATGAACAACTGAATAAGTGACCCACAAACCCATTGTAATAAAACCA
AATAATAAAAATATTGNTAAAACATATGACCAATGAAGACGTCTTAATACTGATCTAAGT
GATTTCTTATTTAAATTTCTTTTACTCTTTCCATCCCAACCATATCCTTTATTATTATTA
CTAATACTATTTTCAATTAATGGT
Length of full length seq. 324