>FC-IC1268 (FC-IC1268Q) /CSM/FC-IC/FC-IC1268Q.Seq.d/
ACTTCATATGGTTGCGCAAAGACAATATGTCCAGATAAATCTNAAGTTTCATGTTCATAT
TACCCAGCAGGTGGATTTAAGGGTGTTCTTCCTTATACTCCAAAAACAACAACCCCAGCT
CCAACTACACCAGCTCCAACCACACCAAAACCAACCACACCANNTNCAACTACTCCAAAA
CCAACAACACCAGCTNCAACCACCCCAAAACCAACAACACCXXXXXXXXXXCCAGCTCCA
ACCACCCCAAAACCAACAACACCAGCTCCAACCACTCCAAAACCAACCACACCAGCTCCA
ACTACTCCAAAACCAACAACACCAGCCCCAACAACACCAGCCCCAACATCAACTCTTACA
GTAGATTGGACTTCATACCAAACTCCAATAAGAGATCAAGGACAATGCGGATCATGTTGG
GCATTTGCTAGTAGTGCAGCACTTGAATCTCGTTACCTTATTAAATATGGT

TSYGCAKTICPDKSXVSCSYYPAGGFKGVLPYTPKTTTPAPTTPAPTTPKPTTPXXTTPK
PTTPAXTTPKPTT---

---PAPTTPKPTTPAPTTPKPTTPAPTTPKPTTPAPTTPAPTSTLTVDWTSYQTPIRDQG
QCGSCWAFASSAALESRYLIKYG

Frame A:
TSYGCAKTICPDKSXVSCSYYPAGGFKGVLPYTPKTTTPAPTTPAPTTPKPTTPXXTTPK
PTTPAXTTPKPTT---

---PAPTTPKPTTPAPTTPKPTTPAPTTPKPTTPAPTTPAPTSTLTVDWTSYQTPIRDQG
QCGSCWAFASSAALESRYLIKYG

Frame B:
lhmvaqrqyvqinlkfhvhitqqvdlrvfflilqkqqpqlqlhqlqphqnqphxxqllqn
qqhqlqppqnqqh---

---qlqppqnqqhqlqplqnqphqlqllqnqqhqpqqhqpqhqllq*iglhtklq*eikd
nadhvghllvvqhlnlvtllnm

Frame C:
fiwlrkdnmsr*ixsfmfilpsrwi*gcsslysknnnpssnytssnhtktnhtxxnyskt
nntsxnhpktnnt---

---ssnhpktnntssnhsktnhtssnysktnntspnntspninsysrldfipnsnkrsrt
mrimlgic**cst*islpy*iw

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1760 (FC-IC1760Q) /CSM/FC-IC/FC-IC1760Q.Seq.d/                   299   2e-80
FC-IC1748 (FC-IC1748Q) /CSM/FC-IC/FC-IC1748Q.Seq.d/                   299   2e-80
FC-IC1665 (FC-IC1665Q) /CSM/FC-IC/FC-IC1665Q.Seq.d/                   299   2e-80
FC-IC1648 (FC-IC1648Q) /CSM/FC-IC/FC-IC1648Q.Seq.d/                   299   2e-80
FC-IC1642 (FC-IC1642Q) /CSM/FC-IC/FC-IC1642Q.Seq.d/                   299   2e-80
FC-IC1631 (FC-IC1631Q) /CSM/FC-IC/FC-IC1631Q.Seq.d/                   299   2e-80
FC-IC1622 (FC-IC1622Q) /CSM/FC-IC/FC-IC1622Q.Seq.d/                   299   2e-80
FC-IC1583 (FC-IC1583Q) /CSM/FC-IC/FC-IC1583Q.Seq.d/                   299   2e-80
FC-IC1527 (FC-IC1527Q) /CSM/FC-IC/FC-IC1527Q.Seq.d/                   299   2e-80
FC-IC1523 (FC-IC1523Q) /CSM/FC-IC/FC-IC1523Q.Seq.d/                   299   2e-80

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB088483|AB088483.1 Dictyostelium discoideum gene for gamete and mating-type specific protein A, complete cds.   186   e-118  3
U28755|U28755.1 Entamoeba invadens cysteine proteinase gene, partial cds.    60   3e-05  1
BH165563|BH165563.1 ENTSB84TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    60   3e-05  1
AZ686636|AZ686636.1 ENTFZ42TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    60   3e-05  1
M94163|M94163.1 Entamoeba histolytica (clone gEh-CPp2) cysteine proteinase (CPp2) gene, complete cds.    60   3e-05  1
AZ535019|AZ535019.1 ENTBP24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    58   1e-04  1
S58670|S58670.1 ACP2=cysteine proteinase [Entamoeba histolytica, HM-1, Genomic/mRNA, 933 nt].    52   0.007  1
CD451153|CD451153.1 USDA-FP_103216 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-42_H04 5', mRNA sequence.    52   0.007  1
AV202732|AV202732.1 Caenorhabditis elegans cDNA clone:yk554b2 : 5' end, single read.    48   0.11   1
AU214559|AU214559.1 Caenorhabditis elegans cDNA clone:yk814f02 : 3' end, single read.    48   0.11   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB088483_1(AB088483|pid:none) Dictyostelium discoideum gmsA gene...    91   2e-17
BC080004_1(BC080004|pid:none) Xenopus laevis MGC81823 protein, m...    54   1e-06
BT050087_1(BT050087|pid:none) Salmo salar clone ssal-evd-563-114...    54   1e-06
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...    54   2e-06
AB091670_1(AB091670|pid:none) Pandalus borealis PbCtL mRNA for c...    54   2e-06
FJ807676_1(FJ807676|pid:none) Dicentrarchus labrax cathepsin L m...    54   2e-06
KHCHL(S00081;A25654;A26818;B25654)cathepsin L (EC 3.4.22.15) - c...    53   3e-06
AY126275_28(AY126275|pid:none) Mamestra configurata nucleopolyhe...    53   4e-06
AX497240_1(AX497240|pid:none) Sequence 7 from Patent WO0229058.        53   4e-06
(Q5E998) RecName: Full=Cathepsin L2;          EC=3.4.22.43; Flag...    52   5e-06

 psg: 0.64  gvh: 0.34  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.65  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: cytoplasmic

>> prediction for FC-IC1268 is mit

>FC-IC1268F.Seq
ACTTCATATGGTTGCGCAAAGACAATATGTCCAGATAAATCTNAAGTTTCATGTTCATAT
TACCCAGCAGGTGGATTTAAGGGTGTTCTTCCTTATACTCCAAAAACAACAACCCCAGCT
CCAACTACACCAGCTCCAACCACACCAAAACCAACCACACCANNTNCAACTACTCCAAAA
CCAACAACACCAGCTNCAACCACCCCAAAACCAACAACACCNNNNNNNNNN

>FC-IC1268Z.Seq
NNNNNNNNNNCCAGCTCCAACCACCCCAAAACCAACAACACCAGCTCCAACCACTCCAAA
ACCAACCACACCAGCTCCAACTACTCCAAAACCAACAACACCAGCCCCAACAACACCAGC
CCCAACATCAACTCTTACAGTAGATTGGACTTCATACCAAACTCCAATAAGAGATCAAGG
ACAATGCGGATCATGTTGGGCATTTGCTAGTAGTGCAGCACTTGAATCTCGTTACCTTAT
TAAATATGGT

>FC-IC1268P.Seq
ACTTCATATGGTTGCGCAAAGACAATATGTCCAGATAAATCTNAAGTTTCATGTTCATAT
TACCCAGCAGGTGGATTTAAGGGTGTTCTTCCTTATACTCCAAAAACAACAACCCCAGCT
CCAACTACACCAGCTCCAACCACACCAAAACCAACCACACCANNTNCAACTACTCCAAAA
CCAACAACACCAGCTNCAACCACCCCAAAACCAACAACACC----------CCAGCTCCA
ACCACCCCAAAACCAACAACACCAGCTCCAACCACTCCAAAACCAACCACACCAGCTCCA
ACTACTCCAAAACCAACAACACCAGCCCCAACAACACCAGCCCCAACATCAACTCTTACA
GTAGATTGGACTTCATACCAAACTCCAATAAGAGATCAAGGACAATGCGGATCATGTTGG
GCATTTGCTAGTAGTGCAGCACTTGAATCTCGTTACCTTATTAAATATGGT