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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1251
Library FC-IC
(Link to library)
Clone ID FC-IC1251
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08307-1
Original site URL
Representative seq. ID FC-IC1251P
(Link to Original site)
Representative DNA sequence 
>FC-IC1251 (FC-IC1251Q) /CSM/FC-IC/FC-IC1251Q.Seq.d/
ACTTTGTATTAATTCAGCAAAAGCAATTGGTTGTAATGTTGTTAATATTGGTGCAGGTGA
TTTAGTTGAAGGTAGAGCTCATTTAATTATGGGTTTAACATGGCAAATTATTAAGATTGG
TTTATTCGCACGTATTAATTTAACTAATCATCCAGAGTTGTATCGTCTTTTACATGATGG
TGAAACAATTGAAGATTTATTGAAACTTCCAGTTGAAGAGATCTTATTGAGATGGTTCAA
TTATCATTTAGCCGCTGCTGGCTCACAAAGAAGAGTAAAGAATTTCTCTGGTGATATTAA
AGATTCAGAATGTTATACAATCCTTTTGAAACAAATCGCACCAAAGGATGCTGGTGTCGA
AACCTCTGCTTTGAATATCTCAAATTTAGATCAACGTGCTGTTAAAGTTTTAGAGAATGC
CGATAAATTAGGTTGTAAGAAGTTCCTTAAACCAAAGGATATCGTAACTGGTTTCCAAAA
ACTTAATTTAGCATTCGTTGCCAATCTTTTCAATACTCATCCAGCATTGGAACCAGTTGA
AGATGTTGTTATAATTGAAGAGACTCGTGAAGAAAAGACTTTTCCGTAATTGGATGAATT
CTTTAGGTGTAGATCCATTCGTTAACAATCTCTACGAAXXXXXXXXXXACTTTGTATTAA
TTCAGCAAAAGCAATTGGTTGTAATGTTGTTAATATTGGTGCAGGTGATTTAGTTGAAGG
TAGAGCTCATTTAATTATGGGTTTAACATGGCAAATTATTAAGATTGGTTTATTCGCACG
TATTAATTTAACTAATCATCCAGAGTTGTATCGTCTTTTACATGATGGTGAAACAATTGA
AGATTTATTGAAACTTCCAGTTGAAGAGATCTTATTGAGATGGTTCAATTATCATTTAGC
CGCTGCTGGCTCACAAAGAAGAGTAAAGAATTTCTCTGGTGATATTAAAGATTCAGAATG
TTATACAATCCTTTTGAAACAAATCGCACCAAAGGATGCTGGTGTCGAAACCTCTGCTTT
GAATATCTCAAATTTAGATCAACGTGCTGTTAAAGTTTTAGAGAATGCCGATAAATTAGG
TTGTAAGAAGTTCCTTAAACCAAAGGATATCGTAACTGGTTTCCAAAAACTTAATTTAGC
ATTCGTTGCCAATCTTTTCAATACTCATCCAGCATTGGAACCAGTTGAAGATGTTGTTAT
AATTGAAGAGACTCGTGAAGAAAAGACTTTCCGTAATTGGATGAATTCTTTAGGTGTAGA
TCCATTCGTTAACAATCTCTACGAAGGT
sequence update 2001.11.23
Translated Amino Acid sequence 
fvliqqkqlvvmllilvqvi*lkveli*lwv*hgkllrlvyshvli*liiqscivfymmv
kqlkiy*nfqlkrsy*dgsiii*pllahkee*rislvilkiqnviqsf*nkshqrmlvsk
pll*isqi*invllkf*rmpin*vvrsslnqris*lvsknli*hslpifsiliqhwnqlk
mll*LKRLVKKRLFRNWMNSLGVDPFVNNLYE---

---LCINSAKAIGCNVVNIGAGDLVEGRAHLIMGLTWQIIKIGLFARINLTNHPELYRLL
HDGETIEDLLKLPVEEILLRWFNYHLAAAGSQRRVKNFSGDIKDSECYTILLKQIAPKDA
GVETSALNISNLDQRAVKVLENADKLGCKKFLKPKDIVTGFQKLNLAFVANLFNTHPALE
PVEDVVIIEETREEKTFRNWMNSLGVDPFVNNLYEG
Translated Amino Acid sequence (All Frames) 
Frame A:
tly*fsksnwl*cc*ywcr*fs*r*ssfnygfnmany*dwfirty*fn*ssrvvssft*w
*nn*rfietss*rdliemvqlsfsrcwltkkskeflw*y*rfrmlynpfetnrtkgcwcr
nlcfeylkfrstcc*sfrecr*irl*evp*tkgyrnwfpkt*fsircqsfqysssigts*
rccyn*rds*rkdfsvig*il*v*ihsltist---

---tly*fsksnwl*cc*ywcr*fs*r*ssfnygfnmany*dwfirty*fn*ssrvvssf
t*w*nn*rfietss*rdliemvqlsfsrcwltkkskeflw*y*rfrmlynpfetnrtkgc
wcrnlcfeylkfrstcc*sfrecr*irl*evp*tkgyrnwfpkt*fsircqsfqysssig
ts*rccyn*rds*rkdfp*ldeffrcrsir*qslrr

Frame B:
lcinsakaigcnvvnigagdlvegrahlimgltwqiikiglfarinltnhpelyrllhdg
etiedllklpveeillrwfnyhlaaagsqrrvknfsgdikdsecytillkqiapkdagve
tsalnisnldqravkvlenadklgckkflkpkdivtgfqklnlafvanlfnthpalepve
dvviieetreektfp*ldeffrcrsir*qslr---

---LCINSAKAIGCNVVNIGAGDLVEGRAHLIMGLTWQIIKIGLFARINLTNHPELYRLL
HDGETIEDLLKLPVEEILLRWFNYHLAAAGSQRRVKNFSGDIKDSECYTILLKQIAPKDA
GVETSALNISNLDQRAVKVLENADKLGCKKFLKPKDIVTGFQKLNLAFVANLFNTHPALE
PVEDVVIIEETREEKTFRNWMNSLGVDPFVNNLYEG

Frame C:
fvliqqkqlvvmllilvqvi*lkveli*lwv*hgkllrlvyshvli*liiqscivfymmv
kqlkiy*nfqlkrsy*dgsiii*pllahkee*rislvilkiqnviqsf*nkshqrmlvsk
pll*isqi*invllkf*rmpin*vvrsslnqris*lvsknli*hslpifsiliqhwnqlk
mll*LKRLVKKRLFRNWMNSLGVDPFVNNLYE---

---fvliqqkqlvvmllilvqvi*lkveli*lwv*hgkllrlvyshvli*liiqscivfy
mmvkqlkiy*nfqlkrsy*dgsiii*pllahkee*rislvilkiqnviqsf*nkshqrml
vskpll*isqi*invllkf*rmpin*vvrsslnqris*lvsknli*hslpifsiliqhwn
qlkmll*lkrlvkkrlsvig*il*v*ihsltistk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1251 (FC-IC1251Q) /CSM/FC-IC/FC-IC1251Q.Seq.d/                  2494   0.0
FC-IC1414 (FC-IC1414Q) /CSM/FC-IC/FC-IC1414Q.Seq.d/                  1269   0.0
FC-IC1223 (FC-IC1223Q) /CSM/FC-IC/FC-IC1223Q.Seq.d/                  1269   0.0
FC-IC0832 (FC-IC0832Q) /CSM/FC-IC/FC-IC0832Q.Seq.d/                  1255   0.0
FC-IC1129 (FC-IC1129Q) /CSM/FC-IC/FC-IC1129Q.Seq.d/                  1160   0.0
FC-IC0464 (FC-IC0464Q) /CSM/FC-IC/FC-IC0464Q.Seq.d/                  1025   0.0
CFK412 (CFK412Q) /CSM/CF/CFK4-A/CFK412Q.Seq.d/                       1023   0.0
FC-IC0571 (FC-IC0571Q) /CSM/FC-IC/FC-IC0571Q.Seq.d/                  1009   0.0
VFA420 (VFA420Q) /CSM/VF/VFA4-A/VFA420Q.Seq.d/                        954   0.0
FC-IC1252 (FC-IC1252Q) /CSM/FC-IC/FC-IC1252Q.Seq.d/                   335   1e-90
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L36202|L36202.1 Dictyostelium discoideum fimbrin (fimA) mRNA, complete cds.  1269   0.0    2
BM058495|BM058495.1 2193-02 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2193-02, mRNA sequence.    50   0.004  2
BX567934|BX567934.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse8h11_q1c.    54   0.005  3
BE239048|0    52   0.019  1
CB143721|CB143721.1 K-EST0197822 L16HLK3 Homo sapiens cDNA clone L16HLK3-17-C07 5', mRNA sequence.    38   0.067  3
AA226818|AA226818.1 zr20a04.r1 Stratagene NT2 neuronal precursor 937230 Homo sapiens cDNA clone IMAGE:663918 5' similar to gb:M22299 T-PLASTIN (HUMAN);, mRNA sequence.    38   0.092  3
BF724876|BF724876.1 bx09f12.y1 Human Iris cDNA (Un-normalized, unamplified): BX Homo sapiens cDNA clone bx09f12 5', mRNA sequence.    38   0.13   3
BE867815|BE867815.1 601443781F1 NIH_MGC_65 Homo sapiens cDNA clone IMAGE:3847604 5', mRNA sequence.    38   0.14   3
AU127916|AU127916.1 Homo sapiens cDNA clone:NT2RP2002345, 5' end, expressed in NT2 neuronal precursor cells after 2-weeks retinoic acid (RA) induction.    38   0.15   3
BE541512|BE541512.1 601067970F1 NIH_MGC_10 Homo sapiens cDNA clone IMAGE:3454241 5', mRNA sequence.    38   0.16   3
dna update 2003.12.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36202_1(L36202|pid:none) Dictyostelium discoideum fimbrin (fimA...   429   e-119
(P54680) RecName: Full=Fimbrin;                                       429   e-119
AE014298_2678(AE014298|pid:none) Drosophila melanogaster chromos...   238   3e-61
FM992693_272(FM992693|pid:none) Candida dubliniensis CD36 chromo...   238   4e-61
CR858800_1(CR858800|pid:none) Pongo abelii mRNA; cDNA DKFZp459F2...   233   8e-60
BC031083_1(BC031083|pid:none) Homo sapiens plastin 1 (I isoform)...   233   8e-60
(Q14651) RecName: Full=Plastin-1; AltName: Full=Intestine-specif...   233   8e-60
AK290316_1(AK290316|pid:none) Homo sapiens cDNA FLJ78068 complet...   233   8e-60
(Q3V0K9) RecName: Full=Plastin-1;  &AK133070_1(AK133070|pid:none...   233   8e-60
BC094886_1(BC094886|pid:none) Xenopus tropicalis plastin 3 (T is...   233   1e-59
protein update 2009. 5.21
PSORT 

 psg: 0.78  gvh: 0.46  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.49  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.33  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: mitochondrial
	 12.0 %: nuclear
	  4.0 %: cytoplasmic
	  4.0 %: plasma membrane

>> prediction for FC-IC1251 is mit
5' end seq. ID FC-IC1251F
5' end seq. 
>FC-IC1251F.Seq
ACTTTGTATTAATTCAGCAAAAGCAATTGGTTGTAATGTTGTTAATATTGGTGCAGGTGA
TTTAGTTGAAGGTAGAGCTCATTTAATTATGGGTTTAACATGGCAAATTATTAAGATTGG
TTTATTCGCACGTATTAATTTAACTAATCATCCAGAGTTGTATCGTCTTTTACATGATGG
TGAAACAATTGAAGATTTATTGAAACTTCCAGTTGAAGAGATCTTATTGAGATGGTTCAA
TTATCATTTAGCCGCTGCTGGCTCACAAAGAAGAGTAAAGAATTTCTCTGGTGATATTAA
AGATTCAGAATGTTATACAATCCTTTTGAAACAAATCGCACCAAAGGATGCTGGTGTCGA
AACCTCTGCTTTGAATATCTCAAATTTAGATCAACGTGCTGTTAAAGTTTTAGAGAATGC
CGATAAATTAGGTTGTAAGAAGTTCCTTAAACCAAAGGATATCGTAACTGGTTTCCAAAA
ACTTAATTTAGCATTCGTTGCCAATCTTTTCAATACTCATCCAGCATTGGAACCAGTTGA
AGATGTTGTTATAATTGAAGAGACTCGTGAAGAAAAGACTTTTCCGTAATTGGATGAATT
CTTTAGGTGTAGATCCATTCGTTAACAATCTCTACGAANNNNNNNNNN
Length of 5' end seq. 648
3' end seq. ID FC-IC1251Z
3' end seq. 
>FC-IC1251Z.Seq
NNNNNNNNNNACTTTGTATTAATTCAGCAAAAGCAATTGGTTGTAATGTTGTTAATATTG
GTGCAGGTGATTTAGTTGAAGGTAGAGCTCATTTAATTATGGGTTTAACATGGCAAATTA
TTAAGATTGGTTTATTCGCACGTATTAATTTAACTAATCATCCAGAGTTGTATCGTCTTT
TACATGATGGTGAAACAATTGAAGATTTATTGAAACTTCCAGTTGAAGAGATCTTATTGA
GATGGTTCAATTATCATTTAGCCGCTGCTGGCTCACAAAGAAGAGTAAAGAATTTCTCTG
GTGATATTAAAGATTCAGAATGTTATACAATCCTTTTGAAACAAATCGCACCAAAGGATG
CTGGTGTCGAAACCTCTGCTTTGAATATCTCAAATTTAGATCAACGTGCTGTTAAAGTTT
TAGAGAATGCCGATAAATTAGGTTGTAAGAAGTTCCTTAAACCAAAGGATATCGTAACTG
GTTTCCAAAAACTTAATTTAGCATTCGTTGCCAATCTTTTCAATACTCATCCAGCATTGG
AACCAGTTGAAGATGTTGTTATAATTGAAGAGACTCGTGAAGAAAAGACTTTCCGTAATT
GGATGAATTCTTTAGGTGTAGATCCATTCGTTAACAATCTCTACGAAGGT
Length of 3' end seq. 650
Connected seq. ID FC-IC1251P
Connected seq. 
>FC-IC1251P.Seq
ACTTTGTATTAATTCAGCAAAAGCAATTGGTTGTAATGTTGTTAATATTGGTGCAGGTGA
TTTAGTTGAAGGTAGAGCTCATTTAATTATGGGTTTAACATGGCAAATTATTAAGATTGG
TTTATTCGCACGTATTAATTTAACTAATCATCCAGAGTTGTATCGTCTTTTACATGATGG
TGAAACAATTGAAGATTTATTGAAACTTCCAGTTGAAGAGATCTTATTGAGATGGTTCAA
TTATCATTTAGCCGCTGCTGGCTCACAAAGAAGAGTAAAGAATTTCTCTGGTGATATTAA
AGATTCAGAATGTTATACAATCCTTTTGAAACAAATCGCACCAAAGGATGCTGGTGTCGA
AACCTCTGCTTTGAATATCTCAAATTTAGATCAACGTGCTGTTAAAGTTTTAGAGAATGC
CGATAAATTAGGTTGTAAGAAGTTCCTTAAACCAAAGGATATCGTAACTGGTTTCCAAAA
ACTTAATTTAGCATTCGTTGCCAATCTTTTCAATACTCATCCAGCATTGGAACCAGTTGA
AGATGTTGTTATAATTGAAGAGACTCGTGAAGAAAAGACTTTTCCGTAATTGGATGAATT
CTTTAGGTGTAGATCCATTCGTTAACAATCTCTACGAA----------ACTTTGTATTAA
TTCAGCAAAAGCAATTGGTTGTAATGTTGTTAATATTGGTGCAGGTGATTTAGTTGAAGG
TAGAGCTCATTTAATTATGGGTTTAACATGGCAAATTATTAAGATTGGTTTATTCGCACG
TATTAATTTAACTAATCATCCAGAGTTGTATCGTCTTTTACATGATGGTGAAACAATTGA
AGATTTATTGAAACTTCCAGTTGAAGAGATCTTATTGAGATGGTTCAATTATCATTTAGC
CGCTGCTGGCTCACAAAGAAGAGTAAAGAATTTCTCTGGTGATATTAAAGATTCAGAATG
TTATACAATCCTTTTGAAACAAATCGCACCAAAGGATGCTGGTGTCGAAACCTCTGCTTT
GAATATCTCAAATTTAGATCAACGTGCTGTTAAAGTTTTAGAGAATGCCGATAAATTAGG
TTGTAAGAAGTTCCTTAAACCAAAGGATATCGTAACTGGTTTCCAAAAACTTAATTTAGC
ATTCGTTGCCAATCTTTTCAATACTCATCCAGCATTGGAACCAGTTGAAGATGTTGTTAT
AATTGAAGAGACTCGTGAAGAAAAGACTTTCCGTAATTGGATGAATTCTTTAGGTGTAGA
TCCATTCGTTAACAATCTCTACGAAGGT
Length of connected seq. 1278
Full length Seq ID -
Full length Seq. -
Length of full length seq. -