FC-IC1245
Library FC-IC
(Link to library)
Clone ID FC-IC1245
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16243-1
Original site URL
Representative seq. ID FC-IC1245E
(Link to Original site)
Representative DNA sequence
>FC-IC1245 (FC-IC1245Q) /CSM/FC-IC/FC-IC1245Q.Seq.d/
AGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATCAATGAGTTT
AAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCCAATCATTAG
TGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGAGCGTTTTGGTGTCAC
CAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGCAGGTGCCGCCCAAAA
AGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAAC
CATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAA
ATTAAAACCAGCTTTCAAAGAGGGTGGT
sequence update 2001.11.10
Translated Amino Acid sequence
AVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQEDPIISGCYNTMGQTSENVAERFGVT
RKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEGIREKTTVADLAK
LKPAFKEGG


Translated Amino Acid sequence (All Frames)
Frame A:
ssqsrfl*hwfsrrcrinefksngmgwwfqrgcprgsnh*wllqhygsnl*kcrrafwch
qkrpr*ilckftqegrcrpksr*i*r*nrsshrkdrgwqnhrrr*rrryp*enhrcrfgq
iktsfqrgw


Frame B:
AVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQEDPIISGCYNTMGQTSENVAERFGVT
RKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEGIREKTTVADLAK
LKPAFKEGG


Frame C:
qskqvsmtlv*qav*nq*v*iqwhgmvvstrlpkriqslvvvttlwvkplkmsqsvlvsp
ektkmnsl*ihtrrqvppkkqvnltmksfqsp*rprmakpsssiktkvsvrkpplqiwpn
*nqlskrv


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFN260 (VFN260Q) /CSM/VF/VFN2-C/VFN260Q.Seq.d/ 769 0.0
VFE239 (VFE239Q) /CSM/VF/VFE2-B/VFE239Q.Seq.d/ 769 0.0
VFD865 (VFD865Q) /CSM/VF/VFD8-C/VFD865Q.Seq.d/ 769 0.0
SFG475 (SFG475Q) /CSM/SF/SFG4-D/SFG475Q.Seq.d/ 769 0.0
SFF320 (SFF320Q) /CSM/SF/SFF3-A/SFF320Q.Seq.d/ 769 0.0
SFF247 (SFF247Q) /CSM/SF/SFF2-B/SFF247Q.Seq.d/ 769 0.0
SFD670 (SFD670Q) /CSM/SF/SFD6-C/SFD670Q.Seq.d/ 769 0.0
SFA524 (SFA524Q) /CSM/SF/SFA5-A/SFA524Q.Seq.d/ 769 0.0
FC-IC1245 (FC-IC1245Q) /CSM/FC-IC/FC-IC1245Q.Seq.d/ 769 0.0
CFF662 (CFF662Q) /CSM/CF/CFF6-C/CFF662Q.Seq.d/ 769 0.0

own update 2001.12. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 769 0.0 1
BF009470|BF009470.1 ss91b04.y1 Gm-c1064 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1064-1448 5' similar to TR:Q43742 Q43742 GLYOXYSOMAL BETA-KETOACYL-THIOLASE ;, mRNA sequence. 42 0.022 2
BF519920|BF519920.1 EST457386 DSIL Medicago truncatula cDNA clone pDSIL-22I5, mRNA sequence. 40 0.23 2
BE943352|BE943352.1 EST422931 MGHG Medicago truncatula cDNA clone pMGHG-15D13, mRNA sequence. 40 0.28 2
BF519425|BF519425.1 EST456888 DSIL Medicago truncatula cDNA clone pDSIL-20L15, mRNA sequence. 40 0.31 2
CF665570|CF665570.1 RTCNT1_16_H01.g1_A029 Root control Pinus taeda cDNA clone RTCNT1_16_H01_A029 5', mRNA sequence. 38 0.31 2
BE323358|BE323358.2 NF002H04PL1F1032 Phosphate starved leaf Medicago truncatula cDNA clone NF002H04PL 5', mRNA sequence. 40 0.32 2
BF650514|BF650514.1 NF097F05EC1F1045 Elicited cell culture Medicago truncatula cDNA clone NF097F05EC 5', mRNA sequence. 40 0.35 2
AW774616|AW774616.1 EST333767 KV3 Medicago truncatula cDNA clone pKV3-23K13, mRNA sequence. 40 0.36 2
BI264284|BI264284.1 NF120F03PL1F1031 Phosphate starved leaf Medicago truncatula cDNA clone NF120F03PL 5', mRNA sequence. 40 0.37 2
dna update 2003.11.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso... 236 2e-61
AB333797_1(AB333797|pid:none) Glycine max mRNA for peroxisomal 3... 128 5e-29
AK222103_1(AK222103|pid:none) Arabidopsis thaliana mRNA for 3-ke... 128 7e-29
(Q56WD9) RecName: Full=3-ketoacyl-CoA thiolase 2, peroxisomal; ... 128 7e-29
T07989(T07989) acetyl-CoA C-acyltransferase (EC 2.3.1.16) precur... 127 9e-29
AM474896_9(AM474896|pid:none) Vitis vinifera contig VV79X001698.... 127 9e-29
BT070433_1(BT070433|pid:none) Picea sitchensis clone WS02729_F15... 127 1e-28
X75329_1(X75329|pid:none) M.indica (Manila) THMF5 mRNA for 3-ket... 127 1e-28
S57792(S57792)acetyl-CoA C-acyltransferase (EC 2.3.1.16) B precu... 127 1e-28
CR954206_482(CR954206|pid:none) Ostreococcus tauri strain OTTH05... 123 2e-27
protein update 2009. 7. 1
PSORT

psg: 0.81 gvh: 0.47 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for FC-IC1245 is cyt

5' end seq. ID FC-IC1245F
5' end seq.
>FC-IC1245F.Seq
AGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATAATGAGTTTA
AATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCCAATCATTAGT
GGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGAGCGTTTTGGTGTCACC
AGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGCAGGTGCCGCCCAAAAA
GCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACC
ATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAA
TTAAAACCAGCTTTCAAAGAGGGTGGTNNNNNNNNNN
Length of 5' end seq. 397
3' end seq. ID FC-IC1245Z
3' end seq.
>FC-IC1245Z.Seq
NNNNNNNNNNAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAAT
CAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATC
CAATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGAGCGTT
TTGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGCAGGTG
CCGCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGG
ATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAG
ATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGT
Length of 3' end seq. 398
Connected seq. ID FC-IC1245P
Connected seq.
>FC-IC1245P.Seq
AGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATAATGAGTTTA
AATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCCAATCATTAGT
GGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGAGCGTTTTGGTGTCACC
AGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGCAGGTGCCGCCCAAAAA
GCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACC
ATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAA
TTAAAACCAGCTTTCAAAGAGGGTGGT----------AGCAGTCAAAGCAGGTTTCTATG
ACATTGGTTTAGCAGGCGGTGTAGAATCAATGAGTTTAAATCCAATGGCATGGGATGGTG
GTTTCAACGAGGTTGCCCAAGAGGATCCAATCATTAGTGGTTGTTACAACACTATGGGTC
AAACCTCTGAAAATGTCGCAGAGCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCT
CTGTAAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAA
TCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGACGAAG
GTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGG
GTGGT
Length of connected seq. 775
Full length Seq ID FC-IC1245E
Full length Seq.
>FC-IC1245E.Seq
AGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATCAATGAGTTT
AAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCCAATCATTAG
TGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGAGCGTTTTGGTGTCAC
CAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGCAGGTGCCGCCCAAAA
AGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAAC
CATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAA
ATTAAAACCAGCTTTCAAAGAGGGTGGT
Length of full length seq. 388