FC-IC1210
Library FC-IC
(Link to library)
Clone ID FC-IC1210
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16271-1
Original site URL
Representative seq. ID FC-IC1210E
(Link to Original site)
Representative DNA sequence
>FC-IC1210 (FC-IC1210Q) /CSM/FC-IC/FC-IC1210Q.Seq.d/
ACTAAATTAAGTGGTTTAGGAGAAACTTGTGGCACCCCATTCACAGAATGTGCAGAACCA
TTCGCATGTCGTTCTGTTACAACCACCAAAGGTAATTTACAAACTTGTGCTATGCCAGAT
TATTTAGGTTTTGGTGAAAGTTGTAATTCAGACTACCAATGTGGTAATGGTTTAACATGT
AATGAAGAGATTTGCTCATTGAAACCACACGTTATTTGTTCTAACGATGGTCAATGTCCA
TTTGGTCAATTCTGTAATGGT
sequence update 2001.11.10
Translated Amino Acid sequence
TKLSGLGETCGTPFTECAEPFACRSVTTTKGNLQTCAMPDYLGFGESCNSDYQCGNGLTC
NEEICSLKPHVICSNDGQCPFGQFCNG


Translated Amino Acid sequence (All Frames)
Frame A:
TKLSGLGETCGTPFTECAEPFACRSVTTTKGNLQTCAMPDYLGFGESCNSDYQCGNGLTC
NEEICSLKPHVICSNDGQCPFGQFCNG


Frame B:
ln*vv*eklvaphsqnvqnhshvvllqppkviyklvlcqii*vlvkvviqttnvvmv*hv
mkrfah*nhtlfvltmvnvhlvnsvm


Frame C:
*ikwfrrnlwhpihrmcrtirmsfcynhqr*ftnlcyarlfrfw*kl*frlpmw*wfnm*
*rdlliettrylf*rwsmsiwsil*w


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-IC1758 (FC-IC1758Q) /CSM/FC-IC/FC-IC1758Q.Seq.d/ 517 e-146
FC-IC1685 (FC-IC1685Q) /CSM/FC-IC/FC-IC1685Q.Seq.d/ 517 e-146
FC-IC1502 (FC-IC1502Q) /CSM/FC-IC/FC-IC1502Q.Seq.d/ 517 e-146
FC-IC1367 (FC-IC1367Q) /CSM/FC-IC/FC-IC1367Q.Seq.d/ 517 e-146
FC-IC1366 (FC-IC1366Q) /CSM/FC-IC/FC-IC1366Q.Seq.d/ 517 e-146
FC-IC1304 (FC-IC1304Q) /CSM/FC-IC/FC-IC1304Q.Seq.d/ 517 e-146
FC-IC1238 (FC-IC1238Q) /CSM/FC-IC/FC-IC1238Q.Seq.d/ 517 e-146
FC-IC1210 (FC-IC1210Q) /CSM/FC-IC/FC-IC1210Q.Seq.d/ 517 e-146
FC-IC1165 (FC-IC1165Q) /CSM/FC-IC/FC-IC1165Q.Seq.d/ 517 e-146
FC-IC1161 (FC-IC1161Q) /CSM/FC-IC/FC-IC1161Q.Seq.d/ 517 e-146

own update 2001.11.19
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AB079253|AB079253.1 Dictyostelium discoideum Dd-gdcA mRNA, complete cds. 517 e-143 1
AB079606|AB079606.1 Dictyostelium discoideum gene for gp64-like protein, complete cds. 517 e-143 1
AB022216|AB022216.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGD8. 42 0.16 3
BW184756|BW184756.1 Ciona intestinalis cDNA, clone:rciht030h24, 3' end, single read. 34 0.58 2
AV839321|AV839321.1 Ciona intestinalis cDNA, clone:rciad02i09, 3' end, single read. 34 0.60 2
BW167829|BW167829.1 Ciona intestinalis cDNA, clone:rcinc016p13, 3' end, single read. 34 0.63 2
AC108532|AC108532.6 Rattus norvegicus clone CH230-91F12, WORKING DRAFT SEQUENCE, 2 unordered pieces. 36 2.4 2
AC100407|AC100407.1 Mus musculus clone RP23-134O4, LOW-PASS SEQUENCE SAMPLING. 34 9.4 2
BQ476463|BQ476463.1 curculio5c04.b Curculio glandium cDNA Curculio glandium cDNA clone curculio5c04 5', mRNA sequence. 40 14 1
BQ476691|BQ476691.1 curculio5a09.g Curculio glandium cDNA Curculio glandium cDNA clone curculio5a09 3', mRNA sequence. 40 14 1
dna update 2003.11.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB079253_1(AB079253|pid:none) Dictyostelium discoideum Dd-gdcA m... 197 7e-50
(Q52085) RecName: Full=Cell-cell adhesion glycoprotein 64; ... 46 4e-04
T16840(T16840)hypothetical protein T10E10.4 - Caenorhabditis ele... 41 0.015
U39644_2(U39644|pid:none) Caenorhabditis elegans cosmid T10E10, ... 41 0.015
AP007166_483(AP007166|pid:none) Aspergillus oryzae RIB40 genomic... 40 0.019
CP001131_3388(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 39 0.057
CP001359_3451(CP001359|pid:none) Anaeromyxobacter dehalogenans 2... 39 0.057
CP000251_3326(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 39 0.074
S47645(S47645) tMDC I protein - crab-eating macaque &X76637_1(X... 38 0.13
AP007166_484(AP007166|pid:none) Aspergillus oryzae RIB40 genomic... 37 0.16
protein update 2009. 7. 1
PSORT

psg: 0.77 gvh: 0.38 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for FC-IC1210 is cyt

5' end seq. ID FC-IC1210F
5' end seq.
>FC-IC1210F.Seq
ACTAAATTAAGTGGTTTAGGAGAAACTTGTGGCACCCCATTCACAGAATGTGCAGAACCA
TTCGCATGTCGTTCTGTTACAACCACCAAAGGTAATTTACAAACTTGTGCTATGCCAGAT
TATTTAGGTTTTGGTGAAAGTTGTAATTCAGACTACCAATGTGGTAATGGTTTAACATGT
AATGAAGAGATTTGCTCATTGAAACCACACGTTATTTGTTCTAACGATGGTCAATGTCCA
TTTGGTCAATTCTGTAATGGTNNNNNNNNNN
Length of 5' end seq. 271
3' end seq. ID FC-IC1210Z
3' end seq.
>FC-IC1210Z.Seq
NNNNNNNNNNACTAAATTAAGTGGTTTAGGAGAAACTTGTGGCACCCCATTCACAGAATG
TGCAGAACCATTCGCATGTCGTTCTGTTACAACCACCAAAGGTAATTTACAAACTTGTGC
TATGCCAGATTATTTAGGTTTTGGTGAAAGTTGTAATTCAGACTACCAATGTGGTAATGG
TTTAACATGTAATGAAGAGATTTGCTCATTGAAACCACACGTTATTTGTTCTAACGATGG
TCAATGTCCATTTGGTCAATTCTGTAATGGT
Length of 3' end seq. 271
Connected seq. ID FC-IC1210P
Connected seq.
>FC-IC1210P.Seq
ACTAAATTAAGTGGTTTAGGAGAAACTTGTGGCACCCCATTCACAGAATGTGCAGAACCA
TTCGCATGTCGTTCTGTTACAACCACCAAAGGTAATTTACAAACTTGTGCTATGCCAGAT
TATTTAGGTTTTGGTGAAAGTTGTAATTCAGACTACCAATGTGGTAATGGTTTAACATGT
AATGAAGAGATTTGCTCATTGAAACCACACGTTATTTGTTCTAACGATGGTCAATGTCCA
TTTGGTCAATTCTGTAATGGT----------ACTAAATTAAGTGGTTTAGGAGAAACTTG
TGGCACCCCATTCACAGAATGTGCAGAACCATTCGCATGTCGTTCTGTTACAACCACCAA
AGGTAATTTACAAACTTGTGCTATGCCAGATTATTTAGGTTTTGGTGAAAGTTGTAATTC
AGACTACCAATGTGGTAATGGTTTAACATGTAATGAAGAGATTTGCTCATTGAAACCACA
CGTTATTTGTTCTAACGATGGTCAATGTCCATTTGGTCAATTCTGTAATGGT
Length of connected seq. 522
Full length Seq ID FC-IC1210E
Full length Seq.
>FC-IC1210E.Seq
ACTAAATTAAGTGGTTTAGGAGAAACTTGTGGCACCCCATTCACAGAATGTGCAGAACCA
TTCGCATGTCGTTCTGTTACAACCACCAAAGGTAATTTACAAACTTGTGCTATGCCAGAT
TATTTAGGTTTTGGTGAAAGTTGTAATTCAGACTACCAATGTGGTAATGGTTTAACATGT
AATGAAGAGATTTGCTCATTGAAACCACACGTTATTTGTTCTAACGATGGTCAATGTCCA
TTTGGTCAATTCTGTAATGGT
Length of full length seq. 261