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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1195
Library FC-IC
(Link to library)
Clone ID FC-IC1195
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14940-1
Original site URL
Representative seq. ID FC-IC1195P
(Link to Original site)
Representative DNA sequence 
>FC-IC1195 (FC-IC1195Q) /CSM/FC-IC/FC-IC1195Q.Seq.d/
ACCAGATGCTAAAATCANAATTTTCGATTTAGGTCGTAAGAAAGCATCAACTGATGAATT
CCCATTATGTGTTCATCTCATCTCCCTCGAAAAAGAACAACTTTCATCAGAAGCCATTGA
AGCTGGTCGTATTTCATGTAACAAATACATCTCAAAGACTGGTGGTAAAGATTCATTCCA
CATGAGAGTCAGAGTTCACCCATGGCACGTATTACGTATTAACAAGATGCTTTCATGCGC
TGGTGCAGATAGACTTCAAACCGGTATGAGAGGTGCCTTCGGTAGACCAATATTAACACG
AGCAACAGTXXXXXXXXXXCTGTTGNTGGTGTTAATATTGGTCTACNGAAGGCACCTNTC
AGANCGGTTTGAAGTCTATCTGCACCAGCGCATGAAAGCATCTTGTTAATACGTAATACG
TGCCATGGGTGAACTCTGACTCTCATGTGGAATGAATCTTTACCACCAGTCTTTGAGATG
TATTTGTTACATGAAATACGACCAGCTTCAATGGCTTCTGATGAAAGTTGTTCTTTTTCG
AGGGAGATGAGATGAACACATAATGGGAATTCATCAGTTGATGCTTTCTTACGACCTAAA
TCGAAAATTCTGATTTTAGCATCTGGT
sequence update 2001.11.23
Translated Amino Acid sequence 
PDAKIXIFDLGRKKASTDEFPLCVHLISLEKEQLSSEAIEAGRISCNKYISKTGGKDSFH
MRVRVHPWHVLRINKMLSCAGADRLQTGMRGAFGRPILTRAT---

---LLXVLILVYXRHLSXRFEVYLHQRMKASC*yviramgel*lscgmnlyhqslrcicy
mkydqlqwllmkvvlfrgr*dehimgihqlmlsydlnrkf*f*hl
Translated Amino Acid sequence (All Frames) 
Frame A:
trc*nxnfrfrs*esin**ipimcsshlprkrttfirsh*swsyfm*qihlkdww*rfip
hesqsspmarity*qdafmrwcr*tsnryerclr*tnintsns---

---LLXVLILVYXRHLSXRFEVYLHQRMKASC*yviramgel*lscgmnlyhqslrcicy
mkydqlqwllmkvvlfrgr*dehimgihqlmlsydlnrkf*f*hl

Frame B:
PDAKIXIFDLGRKKASTDEFPLCVHLISLEKEQLSSEAIEAGRISCNKYISKTGGKDSFH
MRVRVHPWHVLRINKMLSCAGADRLQTGMRGAFGRPILTRAT---

---cxwc*ywstegtxqxglksictsa*khlvnt*yvpwvnsdshve*ifttsl*dvfvt
*nttsfngf**klfffegdemnt*wefis*cfltt*iensdfsiw

Frame C:
qmlksxfsi*vvrkhqlmnshyvfisspskknnfhqkplklvvfhvtntsqrlvvkihst
*esefthgtyyvltrcfhalvqidfkpv*evpsvdqy*heqq---

---vxgvniglxkapxrxv*slsapahesillirntchg*tltlmwneslppvfemyllh
eirpasmasdescsfsremr*thngnssvdaflrpkskililasg
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1195 (FC-IC1195Q) /CSM/FC-IC/FC-IC1195Q.Seq.d/                  1154   0.0
FC-IC0790 (FC-IC0790Q) /CSM/FC-IC/FC-IC0790Q.Seq.d/                   563   e-159
FC-AV10 (FC-AV10Q) /CSM/FC/FC-AV/FC-AV10Q.Seq.d/                      563   e-159
FC-AS07 (FC-AS07Q) /CSM/FC/FC-AS/FC-AS07Q.Seq.d/                      563   e-159
FC-303 (FC-303Q) /CSM/CG/CG-FC/FC-303Q.Seq.d/                         563   e-159
AHJ376 (AHJ376Q) /CSM/AH/AHJ3-D/AHJ376Q.Seq.d/                        563   e-159
AFB142 (AFB142Q) /CSM/AF/AFB1-B/AFB142Q.Seq.d/                        563   e-159
VSJ723 (VSJ723Q) /CSM/VS/VSJ7-A/VSJ723Q.Seq.d/                        553   e-156
SSH847 (SSH847Q) /CSM/SS/SSH8-B/SSH847Q.Seq.d/                        549   e-155
FC-BI12 (FC-BI12Q) /CSM/FC/FC-BI/FC-BI12Q.Seq.d/                      547   e-155
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BE587544|BE587544.1 WHE0660_A12_A24ZM Secale cereale root tip cDNA library Secale cereale cDNA clone WHE0660_A12_A24, mRNA sequence.   103   1e-22  2
AA547804|AA547804.1 MB3D6V1B03T3 Brugia malayi day 6 post-infection third stage larvae SAW96MLW-BmL3d6 Brugia malayi cDNA clone 3D6V1B03 5', mRNA sequence.    98   1e-22  2
BQ621908|BQ621908.1 fch1c.pk002.j9 Conidiobolus cornatus ARSEF 512 Conidiobolus coronatus cDNA, mRNA sequence.    60   1e-18  3
BP189345|BP189345.1 Dugesia japonica cDNA, clone: 06358_HH, expressed in the head.    56   4e-18  5
BP187489|BP187489.1 Dugesia japonica cDNA, clone: 00361_HN, expressed in the head.    56   4e-18  5
AL923438|AL923438.1 Danio rerio EST sequence, clone 125-G03-2.     64   2e-14  2
BM159911|BM159911.1 EST562434 PyBS Plasmodium yoelii yoelii cDNA clone PYCJK41 5' end, mRNA sequence.    86   1e-13  2
BP190174|BP190174.1 Dugesia japonica cDNA, clone: 04458_HH, expressed in the head.    48   1e-13  5
BI202833|BI202833.1 NXPV_091_B06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda cDNA clone NXPV_091_B06 5', mRNA sequence.    72   1e-13  2
CC817046|CC817046.1 1O0002F14R Oxytricha plasmid UUGC1O library Sterkiella histriomuscorum genomic clone UUGC1O0002F14 R, genomic survey sequence.    54   1e-13  3
dna update 2003.12.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FB902303_1(FB902303|pid:none) Sequence 121576 from Patent WO2008...   169   7e-41
FB902309_1(FB902309|pid:none) Sequence 121582 from Patent WO2008...   166   6e-40
EU302535_1(EU302535|pid:none) Lineus viridis ribosomal protein r...   164   1e-39
EU195426_1(EU195426|pid:none) Mucor racemosus strain PTCC 5305 p...   164   2e-39
EF490854_1(EF490854|pid:none) Lepeophtheirus salmonis clone LS00...   163   3e-39
BT080413_1(BT080413|pid:none) Caligus clemensi clone ccle-evs-51...   163   3e-39
EU558359_1(EU558359|pid:none) Phoronis muelleri putative 60S rib...   163   4e-39
BT051173_1(BT051173|pid:none) Medicago truncatula clone MTYF1_F2...   162   5e-39
AC147002_11(AC147002|pid:none) Medicago truncatula clone mth2-15...   162   7e-39
FB902297_1(FB902297|pid:none) Sequence 121570 from Patent WO2008...   162   7e-39
protein update 2009. 5.21
PSORT 

 psg: 0.75  gvh: 0.35  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for FC-IC1195 is cyt
5' end seq. ID FC-IC1195F
5' end seq. 
>FC-IC1195F.Seq
ACCAGATGCTAAAATCANAATTTTCGATTTAGGTCGTAAGAAAGCATCAACTGATGAATT
CCCATTATGTGTTCATCTCATCTCCCTCGAAAAAGAACAACTTTCATCAGAAGCCATTGA
AGCTGGTCGTATTTCATGTAACAAATACATCTCAAAGACTGGTGGTAAAGATTCATTCCA
CATGAGAGTCAGAGTTCACCCATGGCACGTATTACGTATTAACAAGATGCTTTCATGCGC
TGGTGCAGATAGACTTCAAACCGGTATGAGAGGTGCCTTCGGTAGACCAATATTAACACG
AGCAACAGTNNNNNNNNNN
Length of 5' end seq. 319
3' end seq. ID FC-IC1195Z
3' end seq. 
>FC-IC1195Z.Seq
NNNNNNNNNNCTGTTGNTGGTGTTAATATTGGTCTACNGAAGGCACCTNTCAGANCGGTT
TGAAGTCTATCTGCACCAGCGCATGAAAGCATCTTGTTAATACGTAATACGTGCCATGGG
TGAACTCTGACTCTCATGTGGAATGAATCTTTACCACCAGTCTTTGAGATGTATTTGTTA
CATGAAATACGACCAGCTTCAATGGCTTCTGATGAAAGTTGTTCTTTTTCGAGGGAGATG
AGATGAACACATAATGGGAATTCATCAGTTGATGCTTTCTTACGACCTAAATCGAAAATT
CTGATTTTAGCATCTGGT
Length of 3' end seq. 318
Connected seq. ID FC-IC1195P
Connected seq. 
>FC-IC1195P.Seq
ACCAGATGCTAAAATCANAATTTTCGATTTAGGTCGTAAGAAAGCATCAACTGATGAATT
CCCATTATGTGTTCATCTCATCTCCCTCGAAAAAGAACAACTTTCATCAGAAGCCATTGA
AGCTGGTCGTATTTCATGTAACAAATACATCTCAAAGACTGGTGGTAAAGATTCATTCCA
CATGAGAGTCAGAGTTCACCCATGGCACGTATTACGTATTAACAAGATGCTTTCATGCGC
TGGTGCAGATAGACTTCAAACCGGTATGAGAGGTGCCTTCGGTAGACCAATATTAACACG
AGCAACAGT----------CTGTTGNTGGTGTTAATATTGGTCTACNGAAGGCACCTNTC
AGANCGGTTTGAAGTCTATCTGCACCAGCGCATGAAAGCATCTTGTTAATACGTAATACG
TGCCATGGGTGAACTCTGACTCTCATGTGGAATGAATCTTTACCACCAGTCTTTGAGATG
TATTTGTTACATGAAATACGACCAGCTTCAATGGCTTCTGATGAAAGTTGTTCTTTTTCG
AGGGAGATGAGATGAACACATAATGGGAATTCATCAGTTGATGCTTTCTTACGACCTAAA
TCGAAAATTCTGATTTTAGCATCTGGT
Length of connected seq. 617
Full length Seq ID -
Full length Seq. -
Length of full length seq. -